Wall clock time and date at job start Sat Apr 11 2020 03:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39833 * 126.45777 * 2 1 4 4 C 1.35454 * 107.86852 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.86741 * 359.73639 * 4 3 2 6 6 H 0.97001 * 125.67965 * 180.30599 * 5 4 3 7 7 C 1.37645 * 108.64553 * 0.43161 * 5 4 3 8 8 C 1.46679 * 126.23751 * 179.83340 * 7 5 4 9 9 O 1.21690 * 120.00680 * 179.69041 * 8 7 5 10 10 N 1.34784 * 119.99544 * 359.69096 * 8 7 5 11 11 C 1.48038 * 126.94734 * 0.02562 * 10 8 7 12 12 C 1.56025 * 105.15235 * 181.87292 * 11 10 8 13 13 H 1.09003 * 116.90674 * 159.28760 * 12 11 10 14 14 C 1.57084 * 99.59661 * 32.86560 * 12 11 10 15 15 C 1.49281 * 126.92817 * 180.02562 * 10 8 7 16 16 H 1.09002 * 116.75257 * 16.43692 * 15 10 8 17 17 C 1.56011 * 104.12592 * 246.86711 * 15 10 8 18 18 N 1.48282 * 105.16061 * 288.84485 * 17 15 10 19 19 C 1.46897 * 110.99993 * 122.49079 * 18 17 15 20 20 C 1.50709 * 109.46618 * 76.51853 * 19 18 17 21 21 O 1.21283 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99494 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99191 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00634 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99490 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99690 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99985 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47306 * 89.99720 * 27 25 23 29 29 H 1.48499 * 109.46878 * 209.99443 * 27 25 23 30 30 H 1.48500 * 109.47026 * 329.99255 * 27 25 23 31 31 H 1.08997 * 109.46988 * 270.04102 * 1 2 3 32 32 H 1.08997 * 109.47221 * 30.04081 * 1 2 3 33 33 H 1.09004 * 109.47272 * 150.04324 * 1 2 3 34 34 H 1.08002 * 126.06534 * 359.93384 * 3 2 1 35 35 H 1.07998 * 125.56680 * 180.02562 * 4 3 2 36 36 H 1.08998 * 110.24485 * 62.97336 * 11 10 8 37 37 H 1.08998 * 110.34797 * 300.82132 * 11 10 8 38 38 H 1.08996 * 112.36045 * 64.33766 * 14 12 11 39 39 H 1.09004 * 112.35243 * 191.75081 * 14 12 11 40 40 H 1.09000 * 110.32180 * 169.89513 * 17 15 10 41 41 H 1.08998 * 110.32274 * 47.79616 * 17 15 10 42 42 H 1.09001 * 109.46793 * 196.51557 * 19 18 17 43 43 H 1.08997 * 109.47605 * 316.51708 * 19 18 17 44 44 H 0.96990 * 119.99989 * 0.02562 * 22 20 19 45 45 H 0.97003 * 119.99653 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6283 -0.6624 0.0068 6 1 4.4190 -1.2243 0.0128 7 6 2.3263 -1.1089 0.0005 8 6 1.8898 -2.5092 0.0007 9 8 0.7027 -2.7766 0.0004 10 7 2.8037 -3.4999 0.0012 11 6 4.2767 -3.3517 0.0022 12 6 4.8332 -4.8085 -0.0467 13 1 5.8576 -4.9337 -0.3975 14 6 3.7090 -5.4895 -0.9070 15 6 2.5348 -4.9683 0.0010 16 1 1.5283 -5.2827 -0.2751 17 6 3.0499 -5.4500 1.3926 18 7 4.5278 -5.3611 1.3110 19 6 5.0619 -4.4899 2.3663 20 6 5.0490 -5.2274 3.6806 21 8 4.6361 -6.3666 3.7328 22 7 5.4974 -4.6211 4.7978 23 6 5.4852 -5.2918 5.9934 24 1 5.1168 -6.3059 6.0401 25 6 5.9479 -4.6670 7.1451 26 7 5.9358 -5.3097 8.2913 27 14 6.5858 -2.9132 7.0643 28 1 5.4655 -1.9675 7.3000 29 1 7.6267 -2.7167 8.1051 30 1 7.1726 -2.6612 5.7236 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3634 -0.8904 -0.5132 34 1 2.0135 2.1548 -0.0010 35 1 4.4972 1.3253 0.0011 36 1 4.6048 -2.8517 0.9134 37 1 4.6020 -2.7927 -0.8752 38 1 3.6601 -5.0872 -1.9188 39 1 3.7851 -6.5769 -0.9027 40 1 2.7421 -6.4796 1.5745 41 1 2.6745 -4.7983 2.1815 42 1 6.0846 -4.2052 2.1194 43 1 4.4447 -3.5951 2.4458 44 1 5.8279 -3.7102 4.7559 45 1 6.2585 -4.8734 9.0953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318196708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:27 Heat of formation + Delta-G solvation = 8.701685 kcal Electronic energy + Delta-G solvation = -29261.573847 eV Core-core repulsion = 25280.527586 eV Total energy + Delta-G solvation = -3981.046260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.75910 -41.80310 -40.11142 -39.27953 -36.10243 -35.20485 -33.81390 -33.55439 -32.47446 -31.01546 -30.35254 -28.38480 -28.00922 -26.25591 -25.70161 -23.69359 -22.21627 -21.54428 -21.51136 -20.94136 -20.21367 -19.88703 -18.72321 -18.13347 -17.67348 -17.09180 -16.98143 -16.57555 -16.29379 -15.91978 -15.57767 -15.21021 -15.06893 -14.70688 -14.67408 -14.38683 -14.09890 -14.03467 -13.89392 -13.77326 -13.66337 -13.61001 -13.21370 -13.18541 -13.01796 -12.66392 -12.58524 -12.44405 -12.42928 -12.22393 -12.18543 -11.99755 -11.53686 -11.15526 -10.49872 -10.26976 -10.00815 -9.72278 -9.31991 -9.10275 -8.43472 -6.04540 0.39897 1.25324 1.32748 1.41325 1.63414 1.79682 1.93289 2.20356 2.21857 2.24631 2.46809 3.06245 3.12196 3.17328 3.42993 3.55676 3.64366 3.86618 4.00000 4.02746 4.14516 4.19379 4.23829 4.27673 4.34771 4.38241 4.39825 4.57531 4.71843 4.83817 4.85264 4.86392 4.89956 4.94482 5.00075 5.10928 5.17931 5.40410 5.49310 5.67452 5.76181 5.81300 5.94993 5.95632 6.33704 6.52506 6.57215 6.86257 6.96398 7.37119 7.95140 8.74460 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003802 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.523553 B = 7363.639590 C = 8809.346098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.094 4.094 3 C -0.229 4.229 4 C 0.048 3.952 5 N -0.534 5.534 6 H 0.426 0.574 7 C -0.089 4.089 8 C 0.598 3.402 9 O -0.571 6.571 10 N -0.622 5.622 11 C 0.046 3.954 12 C 0.066 3.934 13 H 0.178 0.822 14 C -0.116 4.116 15 C 0.108 3.892 16 H 0.123 0.877 17 C 0.043 3.957 18 N -0.507 5.507 19 C 0.047 3.953 20 C 0.449 3.551 21 O -0.606 6.606 22 N -0.593 5.593 23 C -0.329 4.329 24 H 0.053 0.947 25 C -0.015 4.015 26 N -0.935 5.935 27 Si 0.964 3.036 28 H -0.263 1.263 29 H -0.273 1.273 30 H -0.226 1.226 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.161 0.839 35 H 0.216 0.784 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.027 0.973 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.388 0.612 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 16.436 -24.838 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.253 4.253 4 C -0.089 4.089 5 N -0.135 5.135 6 H 0.270 0.730 7 C -0.201 4.201 8 C 0.390 3.610 9 O -0.451 6.451 10 N -0.356 5.356 11 C -0.077 4.077 12 C -0.041 4.041 13 H 0.195 0.805 14 C -0.154 4.154 15 C 0.005 3.995 16 H 0.141 0.859 17 C -0.086 4.086 18 N -0.231 5.231 19 C -0.084 4.084 20 C 0.236 3.764 21 O -0.490 6.490 22 N -0.235 5.235 23 C -0.458 4.458 24 H 0.071 0.929 25 C -0.214 4.214 26 N -0.576 5.576 27 Si 0.783 3.217 28 H -0.187 1.187 29 H -0.198 1.198 30 H -0.149 1.149 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.178 0.822 35 H 0.232 0.768 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.045 0.955 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.224 0.776 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.781 14.903 -24.487 28.676 hybrid contribution -0.163 0.878 1.180 1.480 sum 0.618 15.781 -23.307 28.154 Atomic orbital electron populations 1.20296 0.89820 1.02659 1.01781 1.20287 0.96212 0.91968 1.01900 1.21120 0.92252 0.99046 1.12864 1.22772 1.00508 0.82766 1.02881 1.42491 1.06598 1.08056 1.56349 0.72985 1.19959 0.85498 0.92303 1.22330 1.17071 0.84631 0.83458 0.75798 1.90780 1.17266 1.83742 1.53351 1.49246 1.07113 1.06229 1.73010 1.23703 0.79309 1.01391 1.03341 1.25105 1.01985 0.89110 0.87869 0.80508 1.23968 0.91096 1.02279 0.98056 1.24172 1.01204 0.78753 0.95348 0.85923 1.23478 0.88185 1.00914 0.96034 1.64523 1.09821 1.46793 1.01975 1.22069 1.03602 0.93644 0.89129 1.20958 0.81583 0.87724 0.86102 1.90546 1.50979 1.20838 1.86612 1.42016 1.59063 1.15271 1.07159 1.18986 1.41988 0.99366 0.85460 0.92880 1.26123 0.97143 1.04439 0.93682 1.69808 1.47308 1.40252 1.00219 0.85389 0.79066 0.76595 0.80622 1.18729 1.19753 1.14875 0.92254 0.89932 0.92458 0.82156 0.76784 0.90116 0.87437 0.87303 0.87870 0.90910 0.95488 0.84744 0.91535 0.77648 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.83 71.23 0.70 -1.34 16 2 C -0.09 -2.19 6.21 -19.57 -0.12 -2.31 16 3 C -0.23 -3.76 10.76 22.01 0.24 -3.53 16 4 C 0.05 0.55 11.89 83.48 0.99 1.55 16 5 N -0.53 -7.77 5.70 -183.62 -1.05 -8.82 16 6 H 0.43 3.90 5.06 -92.71 -0.47 3.43 16 7 C -0.09 -2.08 6.91 40.35 0.28 -1.80 16 8 C 0.60 16.78 7.87 86.45 0.68 17.46 16 9 O -0.57 -20.27 15.16 -4.32 -0.07 -20.34 16 10 N -0.62 -13.84 2.95 -772.09 -2.28 -16.12 16 11 C 0.05 0.63 4.15 87.13 0.36 0.99 16 12 C 0.07 0.97 5.21 46.85 0.24 1.21 16 13 H 0.18 1.35 8.14 -2.39 -0.02 1.33 16 14 C -0.12 -1.73 6.81 33.55 0.23 -1.50 16 15 C 0.11 2.50 5.24 47.02 0.25 2.74 16 16 H 0.12 2.98 8.08 -2.39 -0.02 2.96 16 17 C 0.04 1.31 5.43 87.08 0.47 1.78 16 18 N -0.51 -13.61 4.84 -844.10 -4.09 -17.70 16 19 C 0.05 1.34 4.13 85.56 0.35 1.70 16 20 C 0.45 20.16 7.63 87.66 0.67 20.83 16 21 O -0.61 -33.85 15.47 -3.04 -0.05 -33.90 16 22 N -0.59 -27.89 5.09 -306.97 -1.56 -29.45 16 23 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 24 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 25 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 26 N -0.94 -56.82 13.96 21.66 0.30 -56.51 16 27 Si 0.96 38.51 27.74 68.60 1.90 40.42 16 28 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 29 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 30 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.57 6.48 -2.38 -0.02 1.55 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.22 0.53 8.06 -2.91 -0.02 0.50 16 36 H 0.08 1.09 4.78 -2.39 -0.01 1.08 16 37 H 0.11 0.77 7.17 -2.39 -0.02 0.75 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.03 0.99 7.42 -2.39 -0.02 0.97 16 42 H 0.13 2.71 8.03 -2.39 -0.02 2.69 16 43 H 0.07 1.75 6.11 -2.39 -0.01 1.74 16 44 H 0.39 14.94 5.76 -92.72 -0.53 14.40 16 45 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -89.75 358.94 -0.23 -89.99 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.01 Total: 33.60 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 6.66 Total: 18.83 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -8.67 Total: -128.60 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.11 Total: -54.24 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.42 kcal Total: -89.75 -0.23 -89.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318196708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.688 kcal (2) G-P(sol) polarization free energy of solvation -89.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds