Wall clock time and date at job start Sat Apr 11 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46645 * 2 1 4 4 H 1.09004 * 109.46996 * 55.00441 * 3 2 1 5 5 C 1.50694 * 109.47150 * 174.99755 * 3 2 1 6 6 H 1.07997 * 120.00337 * 119.99864 * 5 3 2 7 7 C 1.37886 * 120.00390 * 300.00082 * 5 3 2 8 8 N 1.31520 * 119.99574 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00195 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46831 * 120.00071 * 9 7 5 12 12 H 1.48504 * 109.47110 * 240.00262 * 9 7 5 13 13 O 1.45197 * 109.47506 * 295.00169 * 3 2 1 14 14 C 1.34781 * 117.00313 * 89.99521 * 13 3 2 15 15 O 1.21542 * 119.99831 * 0.02562 * 14 13 3 16 16 C 1.47087 * 119.99909 * 180.02562 * 14 13 3 17 17 C 1.38118 * 126.82705 * 359.96454 * 16 14 13 18 18 N 1.34061 * 107.86611 * 180.02562 * 17 16 14 19 19 C 1.46499 * 125.14959 * 180.02562 * 18 17 16 20 20 N 1.39761 * 109.70442 * 359.77701 * 18 17 16 21 21 C 1.31316 * 109.11728 * 0.37995 * 20 18 17 22 22 C 1.48371 * 126.51932 * 179.90928 * 21 20 18 23 23 C 1.40887 * 126.23106 * 144.68733 * 22 21 20 24 24 N 1.30666 * 108.08953 * 179.71336 * 23 22 21 25 25 N 1.40002 * 108.54083 * 0.43915 * 24 23 22 26 26 C 1.46506 * 125.88940 * 179.81432 * 25 24 23 27 27 C 1.53002 * 109.47035 * 304.69302 * 26 25 24 28 28 C 1.34821 * 108.22784 * 359.54966 * 25 24 23 29 29 H 1.08992 * 109.47132 * 60.00389 * 1 2 3 30 30 H 1.09009 * 109.46718 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47472 * 299.99615 * 1 2 3 32 32 H 1.08994 * 109.47234 * 240.00591 * 2 1 3 33 33 H 1.09001 * 109.47044 * 119.99512 * 2 1 3 34 34 H 0.96997 * 119.99859 * 180.02562 * 8 7 5 35 35 H 1.07998 * 126.06879 * 0.03024 * 17 16 14 36 36 H 1.09006 * 109.47429 * 89.99700 * 19 18 17 37 37 H 1.09003 * 109.47520 * 209.99568 * 19 18 17 38 38 H 1.09000 * 109.47251 * 329.99496 * 19 18 17 39 39 H 1.07992 * 125.95417 * 359.97438 * 23 22 21 40 40 H 1.09004 * 109.47073 * 64.68984 * 26 25 24 41 41 H 1.09000 * 109.47212 * 184.69067 * 26 25 24 42 42 H 1.09004 * 109.46930 * 299.99770 * 27 26 25 43 43 H 1.09004 * 109.47059 * 59.99372 * 27 26 25 44 44 H 1.08992 * 109.47060 * 179.97438 * 27 26 25 45 45 H 1.07994 * 126.20169 * 180.26435 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5417 1.4445 0.1239 6 1 4.1471 1.8891 -0.6522 7 6 4.1432 0.8787 1.2281 8 7 3.4061 0.3368 2.1730 9 14 6.0049 0.8804 1.3813 10 1 6.5987 1.5457 0.1938 11 1 6.3997 1.6161 2.6093 12 1 6.4962 -0.5186 1.4627 13 8 1.6557 2.0918 -1.2406 14 6 0.4676 2.7280 -1.2560 15 8 -0.2281 2.7403 -0.2595 16 6 0.0131 3.4075 -2.4787 17 6 0.6856 3.4828 -3.6828 18 7 -0.0718 4.1901 -4.5334 19 6 0.2824 4.4995 -5.9208 20 7 -1.2530 4.5827 -3.8978 21 6 -1.2439 4.1401 -2.6616 22 6 -2.3063 4.3379 -1.6450 23 6 -2.6942 3.4135 -0.6551 24 7 -3.6538 3.9522 0.0494 25 7 -3.9216 5.2268 -0.4642 26 6 -4.9316 6.1609 0.0394 27 6 -6.2996 5.4756 0.0503 28 6 -3.0857 5.4488 -1.4984 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0610 2.9499 35 1 1.6503 3.0489 -3.9005 36 1 -0.0893 3.7109 -6.5752 37 1 -0.1665 5.4507 -6.2070 38 1 1.3664 4.5670 -6.0127 39 1 -2.2694 2.4325 -0.5024 40 1 -4.6705 6.4669 1.0524 41 1 -4.9697 7.0379 -0.6067 42 1 -6.5607 5.1696 -0.9628 43 1 -6.2615 4.5985 0.6963 44 1 -7.0510 6.1704 0.4253 45 1 -3.0409 6.3435 -2.1017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:48 Heat of formation + Delta-G solvation = 64.324278 kcal Electronic energy + Delta-G solvation = -28622.192057 eV Core-core repulsion = 24643.557774 eV Total energy + Delta-G solvation = -3978.634283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.22980 -40.58239 -38.98159 -35.55443 -34.60122 -33.38326 -33.29249 -31.33392 -30.60623 -30.06055 -29.39604 -27.25156 -26.49093 -24.01857 -23.47449 -22.60933 -21.69855 -20.85755 -20.07908 -19.35889 -19.00730 -17.51035 -16.83888 -16.36937 -16.07033 -15.63975 -15.46794 -15.07388 -14.87902 -14.59164 -14.29893 -14.14303 -13.63045 -13.19184 -13.02401 -13.00514 -12.74655 -12.62621 -12.52957 -12.24234 -12.22966 -11.85843 -11.56301 -11.35029 -11.23425 -11.07500 -10.91819 -10.81847 -10.55508 -10.50565 -10.20292 -9.73466 -9.68220 -9.47909 -9.26345 -9.13708 -8.68915 -8.59197 -8.37805 -7.92648 -6.12049 -4.18360 1.66721 1.74098 2.34247 2.35406 2.59368 3.26613 3.30122 3.33549 3.37926 3.89436 3.95549 4.34704 4.41599 4.46814 4.74647 4.80242 4.86732 4.95199 4.98716 4.99896 5.19964 5.22967 5.26427 5.36028 5.50764 5.64734 5.71776 5.77550 5.94951 6.08875 6.21538 6.34794 6.41872 6.51808 6.61619 6.89432 6.89963 7.00842 7.05958 7.10426 7.28834 7.40588 7.67545 7.69931 7.84853 7.91177 8.08460 8.26228 8.78666 9.06188 9.46790 10.94676 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011563 B = 0.003498 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2420.909966 B = 8002.744718 C = 9664.545340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.224 3.776 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.908 3.092 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.282 1.282 13 O -0.357 6.357 14 C 0.532 3.468 15 O -0.515 6.515 16 C -0.264 4.264 17 C 0.125 3.875 18 N -0.373 5.373 19 C 0.100 3.900 20 N -0.304 5.304 21 C 0.217 3.783 22 C -0.172 4.172 23 C 0.118 3.882 24 N -0.302 5.302 25 N -0.376 5.376 26 C 0.132 3.868 27 C -0.165 4.165 28 C 0.086 3.914 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.107 0.893 34 H 0.265 0.735 35 H 0.193 0.807 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.197 0.803 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 10.666 -12.831 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.736 3.264 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 O -0.274 6.274 14 C 0.376 3.624 15 O -0.406 6.406 16 C -0.277 4.277 17 C -0.023 4.023 18 N -0.152 5.152 19 C -0.041 4.041 20 N -0.124 5.124 21 C 0.048 3.952 22 C -0.186 4.186 23 C -0.070 4.070 24 N -0.122 5.122 25 N -0.157 5.157 26 C 0.011 3.989 27 C -0.222 4.222 28 C -0.064 4.064 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.075 0.925 35 H 0.210 0.790 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.213 0.787 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.228 11.186 -12.353 21.912 hybrid contribution 2.164 -0.363 0.004 2.195 sum -12.063 10.822 -12.349 20.375 Atomic orbital electron populations 1.21867 0.98343 0.98900 1.00916 1.21999 0.92723 0.99409 1.03115 1.20614 0.94723 0.88673 0.78850 0.93413 1.21082 0.89871 1.38601 1.06081 0.91449 1.24876 0.99008 0.94935 0.95175 1.69907 1.35135 1.37974 1.09449 0.86276 0.84242 0.77788 0.78140 1.19579 1.20852 1.20798 1.86510 1.34042 1.62852 1.43984 1.19699 0.80592 0.76030 0.86066 1.90735 1.55456 1.59413 1.34980 1.20646 0.97937 1.14501 0.94586 1.23172 0.97188 0.92760 0.89216 1.48019 1.14246 1.41481 1.11471 1.21922 1.01941 1.03066 0.77177 1.77267 1.02852 1.25409 1.06899 1.20845 0.91184 0.93263 0.89902 1.17621 1.02351 0.96832 1.01821 1.24280 0.91629 1.00519 0.90621 1.77325 1.20203 0.92243 1.22417 1.48572 1.28724 1.13795 1.24650 1.21642 0.86611 0.89818 1.00823 1.22049 0.94914 1.02050 1.03232 1.22432 0.92195 0.99685 0.92061 0.94742 0.95029 0.92670 0.94186 0.87523 0.92541 0.79049 0.90561 0.89242 0.89095 0.78689 0.89776 0.88899 0.92141 0.90895 0.90912 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.83 16 2 C -0.13 -3.34 5.49 -26.73 -0.15 -3.49 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.87 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.43 8.90 -34.44 -0.31 -14.73 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.70 5.29 -17.81 -0.09 1.61 16 8 N -0.89 -25.12 11.29 55.43 0.63 -24.50 16 9 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 O -0.36 -8.44 9.65 -40.71 -0.39 -8.84 16 14 C 0.53 11.48 6.40 34.32 0.22 11.70 16 15 O -0.51 -11.91 10.11 -19.30 -0.20 -12.11 16 16 C -0.26 -4.74 6.31 -102.97 -0.65 -5.39 16 17 C 0.13 1.77 11.28 -16.62 -0.19 1.59 16 18 N -0.37 -4.70 3.95 -67.63 -0.27 -4.97 16 19 C 0.10 0.71 11.39 59.85 0.68 1.39 16 20 N -0.30 -4.60 12.50 34.59 0.43 -4.17 16 21 C 0.22 3.67 7.27 -80.53 -0.59 3.09 16 22 C -0.17 -2.86 5.83 -105.35 -0.61 -3.47 16 23 C 0.12 2.10 10.13 -17.05 -0.17 1.93 16 24 N -0.30 -5.11 12.38 30.81 0.38 -4.73 16 25 N -0.38 -5.06 3.67 -61.08 -0.22 -5.28 16 26 C 0.13 1.15 7.22 -4.04 -0.03 1.13 16 27 C -0.16 -1.31 10.10 37.16 0.38 -0.94 16 28 C 0.09 1.16 11.40 -16.87 -0.19 0.97 16 29 H 0.03 0.73 6.06 -51.93 -0.31 0.41 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 1.27 7.79 -51.93 -0.40 0.86 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 2.88 5.95 -51.93 -0.31 2.57 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.19 2.21 8.06 -52.49 -0.42 1.78 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.43 8.13 -51.93 -0.42 0.01 16 39 H 0.20 3.71 6.35 -52.49 -0.33 3.37 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -34.42 379.11 -6.74 -41.16 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.35 Total: 3.28 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.45 Total: -1.59 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.95 Total: -43.65 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.59 Total: -20.94 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -6.74 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.487 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds