Wall clock time and date at job start Sat Apr 11 2020 03:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 C 1.53007 * 109.47284 * 119.99893 * 2 1 3 5 5 S 1.81392 * 109.46911 * 64.99903 * 4 2 1 6 6 O 1.42102 * 108.58049 * 65.51588 * 5 4 2 7 7 O 1.42105 * 108.58153 * 294.48818 * 5 4 2 8 8 C 1.81401 * 101.92406 * 180.02562 * 5 4 2 9 9 C 1.53000 * 109.47494 * 180.02562 * 8 5 4 10 10 C 1.50698 * 109.47155 * 179.97438 * 9 8 5 11 11 O 1.21285 * 119.99902 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00207 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00008 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46948 * 174.94227 * 13 12 10 15 15 N 1.46505 * 115.55024 * 80.38544 * 14 13 12 16 16 C 1.36942 * 119.99583 * 65.27855 * 15 14 13 17 17 H 1.08007 * 119.99964 * 354.96284 * 16 15 14 18 18 C 1.38809 * 119.99798 * 174.68484 * 16 15 14 19 19 N 1.31619 * 120.00146 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99839 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47189 * 120.00123 * 20 18 16 23 23 H 1.48504 * 109.47055 * 240.00189 * 20 18 16 24 24 C 1.52999 * 117.50098 * 226.06177 * 14 13 12 25 25 C 1.53002 * 117.49982 * 294.71995 * 14 13 12 26 26 H 1.08998 * 109.47050 * 299.99720 * 1 2 3 27 27 H 1.08996 * 109.46991 * 59.99813 * 1 2 3 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47705 * 240.00050 * 2 1 3 30 30 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46859 * 300.00286 * 3 2 1 32 32 H 1.08998 * 109.46893 * 60.00183 * 3 2 1 33 33 H 1.09004 * 109.46866 * 305.00510 * 4 2 1 34 34 H 1.08996 * 109.47021 * 184.99895 * 4 2 1 35 35 H 1.09001 * 109.47028 * 59.99610 * 8 5 4 36 36 H 1.08998 * 109.47098 * 300.00537 * 8 5 4 37 37 H 1.09002 * 109.47024 * 60.00113 * 9 8 5 38 38 H 1.09002 * 109.46875 * 300.00037 * 9 8 5 39 39 H 0.97001 * 119.99786 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.47255 * 54.94194 * 13 12 10 41 41 H 1.08999 * 109.46673 * 294.93754 * 13 12 10 42 42 H 0.96998 * 120.00497 * 245.27841 * 15 14 13 43 43 H 0.97000 * 119.99696 * 180.02562 * 19 18 16 44 44 H 1.08998 * 117.49974 * 215.00780 * 24 14 13 45 45 H 1.09000 * 117.49520 * 0.02562 * 24 14 13 46 46 H 1.09000 * 117.49687 * 359.97438 * 25 14 13 47 47 H 1.08995 * 117.49858 * 144.97063 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 16 1.5601 -2.4690 1.1767 6 8 2.2382 -3.0799 0.0874 7 8 0.1433 -2.5529 1.2468 8 6 2.2539 -3.1128 2.7242 9 6 1.9429 -4.6064 2.8402 10 6 2.5198 -5.1413 4.1255 11 8 3.1209 -4.4009 4.8748 12 7 2.3687 -6.4426 4.4419 13 6 2.9290 -6.9624 5.6917 14 6 2.5120 -8.4239 5.8686 15 7 3.2986 -9.4014 5.1123 16 6 4.6243 -9.5852 5.4024 17 1 5.1101 -8.9539 6.1317 18 6 5.3422 -10.5867 4.7633 19 7 4.7489 -11.3593 3.8782 20 14 7.1503 -10.8379 5.1596 21 1 7.5759 -9.8464 6.1799 22 1 7.3554 -12.2108 5.6870 23 1 7.9573 -10.6557 3.9263 24 6 1.9901 -8.8482 7.2428 25 6 1.0227 -8.7149 6.0641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.8126 -2.5828 3.5683 36 1 3.3338 -2.9655 2.7272 37 1 2.3846 -5.1360 1.9960 38 1 0.8630 -4.7540 2.8370 39 1 1.8883 -7.0348 3.8424 40 1 2.5556 -6.3740 6.5298 41 1 4.0165 -6.8965 5.6574 42 1 2.8805 -9.9184 4.4061 43 1 5.2506 -12.0594 3.4319 44 1 2.2321 -9.8547 7.5843 45 1 1.9435 -8.0862 8.0207 46 1 0.3401 -7.8651 6.0671 47 1 0.6281 -9.6333 5.6297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483744708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:24 Heat of formation + Delta-G solvation = -85.033136 kcal Electronic energy + Delta-G solvation = -26319.549739 eV Core-core repulsion = 22437.590032 eV Total energy + Delta-G solvation = -3881.959707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -39.61639 -37.58251 -37.29597 -36.88227 -36.16324 -33.84862 -33.32182 -33.03274 -29.74316 -28.54345 -27.64339 -27.18114 -24.45663 -23.90506 -21.92124 -20.96243 -20.12934 -19.17780 -19.14832 -17.72055 -17.15938 -16.82576 -16.51645 -16.18407 -15.76461 -15.62277 -15.18135 -15.04032 -14.41505 -14.21887 -13.95450 -13.75003 -13.60566 -13.23493 -13.13865 -12.97606 -12.77873 -12.60676 -12.49285 -12.27493 -12.21823 -11.94340 -11.84586 -11.63632 -11.47917 -11.32963 -11.16452 -11.03901 -10.99502 -10.91842 -10.51707 -10.36361 -10.24595 -9.83962 -9.73707 -9.35986 -8.90838 -8.71480 -7.10864 -5.87048 -3.17978 -0.35419 2.43117 2.76007 3.12732 3.38554 3.45181 3.46968 3.47785 3.69512 4.03674 4.20149 4.22571 4.38660 4.49832 4.53795 4.56220 4.81238 4.86421 5.02454 5.07872 5.16548 5.21129 5.21730 5.26924 5.30080 5.38924 5.44669 5.46670 5.52354 5.59458 5.62180 5.75350 5.76434 5.91475 6.06317 6.17052 6.39208 6.51645 6.60473 6.71408 6.77540 7.66183 7.75237 8.30959 8.38939 9.42385 9.95293 10.30544 11.34797 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002276 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.916947 B =12297.380681 C =13016.608625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.609 4.609 5 S 2.414 3.586 6 O -0.935 6.935 7 O -0.934 6.934 8 C -0.593 4.593 9 C -0.135 4.135 10 C 0.517 3.483 11 O -0.549 6.549 12 N -0.709 5.709 13 C 0.146 3.854 14 C 0.126 3.874 15 N -0.689 5.689 16 C -0.239 4.239 17 H 0.073 0.927 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.186 4.186 25 C -0.185 4.185 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.403 0.597 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.388 0.612 43 H 0.256 0.744 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 22.666 -5.194 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.738 4.738 5 S 2.598 3.402 6 O -0.932 6.932 7 O -0.931 6.931 8 C -0.722 4.722 9 C -0.176 4.176 10 C 0.302 3.698 11 O -0.428 6.428 12 N -0.358 5.358 13 C 0.021 3.979 14 C 0.032 3.968 15 N -0.329 5.329 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.227 4.227 25 C -0.223 4.223 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.158 0.842 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.238 0.762 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.223 0.777 43 H 0.066 0.934 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.738 22.687 -5.257 25.242 hybrid contribution 1.234 -0.318 0.442 1.349 sum -8.503 22.370 -4.815 24.411 Atomic orbital electron populations 1.22363 0.93759 1.04855 1.03058 1.20852 0.96843 0.97737 0.94899 1.21812 1.01258 0.94497 1.02383 1.30404 1.12117 1.23693 1.07559 1.08204 0.76294 0.78211 0.77537 1.93611 1.76135 1.74014 1.49422 1.93570 1.27299 1.85647 1.86549 1.30102 1.14636 1.05452 1.22023 1.21355 1.04047 0.92875 0.99353 1.20117 0.80194 0.82421 0.87102 1.90673 1.42501 1.57584 1.52011 1.45914 1.56765 1.09142 1.24006 1.21291 0.99484 0.92606 0.84523 1.20168 0.91058 0.89409 0.96167 1.41799 1.07785 1.43426 1.39872 1.19204 0.85713 1.12482 1.19582 0.90925 1.24771 0.98451 0.97994 0.99374 1.69666 1.35717 1.22428 1.29966 0.86110 0.84906 0.77574 0.77555 1.20423 1.21780 1.21786 1.23369 1.04324 1.02807 0.92192 1.23085 0.92364 1.02663 1.04178 0.91663 0.91513 0.89905 0.89569 0.92238 0.91927 0.92216 0.84746 0.84745 0.84287 0.84216 0.87087 0.87287 0.76224 0.92020 0.90532 0.77696 0.93412 0.88554 0.89950 0.89461 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 8.83 37.16 0.33 -0.95 16 2 C -0.08 -0.55 2.92 -90.61 -0.26 -0.81 16 3 C -0.14 -0.73 9.19 37.16 0.34 -0.39 16 4 C -0.61 -3.37 5.26 37.16 0.20 -3.18 16 5 S 2.41 20.17 4.51 -107.50 -0.49 19.69 16 6 O -0.93 -11.23 18.10 -57.83 -1.05 -12.27 16 7 O -0.93 -10.02 15.46 -57.83 -0.89 -10.92 16 8 C -0.59 -5.09 5.09 37.16 0.19 -4.90 16 9 C -0.14 -1.45 5.71 -27.88 -0.16 -1.61 16 10 C 0.52 7.65 7.83 -10.99 -0.09 7.56 16 11 O -0.55 -9.78 15.98 5.55 0.09 -9.69 16 12 N -0.71 -10.77 5.51 -60.30 -0.33 -11.10 16 13 C 0.15 2.58 5.73 -4.04 -0.02 2.55 16 14 C 0.13 2.34 2.15 -131.81 -0.28 2.06 16 15 N -0.69 -16.16 5.49 -47.22 -0.26 -16.41 16 16 C -0.24 -6.35 9.56 -15.06 -0.14 -6.50 16 17 H 0.07 1.92 7.77 -52.48 -0.41 1.51 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 20 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C -0.19 -3.16 10.11 -26.70 -0.27 -3.43 16 25 C -0.19 -2.86 10.14 -26.69 -0.27 -3.13 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.71 5.41 -51.93 -0.28 0.43 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.14 1.00 8.10 -51.92 -0.42 0.58 16 36 H 0.14 1.12 8.10 -51.92 -0.42 0.70 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 5.49 8.48 -40.82 -0.35 5.15 16 40 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 41 H 0.08 1.57 7.73 -51.93 -0.40 1.17 16 42 H 0.39 9.67 8.04 -40.82 -0.33 9.34 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 45 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -35.66 400.80 -9.80 -45.45 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.07 Total: 11.68 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -0.54 Total: -13.09 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.13 Total: -53.93 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.85 Total: -32.88 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 20.17 SS G_CDS: -0.49 Total: 19.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.66 -9.80 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483744708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.580 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds