Wall clock time and date at job start Sat Apr 11 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47196 * 2 1 4 4 C 1.53007 * 109.47284 * 119.99893 * 2 1 3 5 5 S 1.81392 * 109.46911 * 64.99903 * 4 2 1 6 6 O 1.42102 * 108.58049 * 65.51588 * 5 4 2 7 7 O 1.42105 * 108.58153 * 294.48818 * 5 4 2 8 8 C 1.81401 * 101.92406 * 180.02562 * 5 4 2 9 9 C 1.53000 * 109.47494 * 180.02562 * 8 5 4 10 10 C 1.50698 * 109.47155 * 179.97438 * 9 8 5 11 11 O 1.21285 * 119.99902 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00207 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00008 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46948 * 174.94227 * 13 12 10 15 15 N 1.46505 * 115.55024 * 80.38544 * 14 13 12 16 16 C 1.36942 * 119.99583 * 65.27855 * 15 14 13 17 17 H 1.08007 * 119.99964 * 354.96284 * 16 15 14 18 18 C 1.38809 * 119.99798 * 174.68484 * 16 15 14 19 19 N 1.31619 * 120.00146 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99839 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47255 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47189 * 120.00123 * 20 18 16 23 23 H 1.48504 * 109.47055 * 240.00189 * 20 18 16 24 24 C 1.52999 * 117.50098 * 226.06177 * 14 13 12 25 25 C 1.53002 * 117.49982 * 294.71995 * 14 13 12 26 26 H 1.08998 * 109.47050 * 299.99720 * 1 2 3 27 27 H 1.08996 * 109.46991 * 59.99813 * 1 2 3 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47705 * 240.00050 * 2 1 3 30 30 H 1.08999 * 109.46853 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46859 * 300.00286 * 3 2 1 32 32 H 1.08998 * 109.46893 * 60.00183 * 3 2 1 33 33 H 1.09004 * 109.46866 * 305.00510 * 4 2 1 34 34 H 1.08996 * 109.47021 * 184.99895 * 4 2 1 35 35 H 1.09001 * 109.47028 * 59.99610 * 8 5 4 36 36 H 1.08998 * 109.47098 * 300.00537 * 8 5 4 37 37 H 1.09002 * 109.47024 * 60.00113 * 9 8 5 38 38 H 1.09002 * 109.46875 * 300.00037 * 9 8 5 39 39 H 0.97001 * 119.99786 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.47255 * 54.94194 * 13 12 10 41 41 H 1.08999 * 109.46673 * 294.93754 * 13 12 10 42 42 H 0.96998 * 120.00497 * 245.27841 * 15 14 13 43 43 H 0.97000 * 119.99696 * 180.02562 * 19 18 16 44 44 H 1.08998 * 117.49974 * 215.00780 * 24 14 13 45 45 H 1.09000 * 117.49520 * 0.02562 * 24 14 13 46 46 H 1.09000 * 117.49687 * 359.97438 * 25 14 13 47 47 H 1.08995 * 117.49858 * 144.97063 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 16 1.5601 -2.4690 1.1767 6 8 2.2382 -3.0799 0.0874 7 8 0.1433 -2.5529 1.2468 8 6 2.2539 -3.1128 2.7242 9 6 1.9429 -4.6064 2.8402 10 6 2.5198 -5.1413 4.1255 11 8 3.1209 -4.4009 4.8748 12 7 2.3687 -6.4426 4.4419 13 6 2.9290 -6.9624 5.6917 14 6 2.5120 -8.4239 5.8686 15 7 3.2986 -9.4014 5.1123 16 6 4.6243 -9.5852 5.4024 17 1 5.1101 -8.9539 6.1317 18 6 5.3422 -10.5867 4.7633 19 7 4.7489 -11.3593 3.8782 20 14 7.1503 -10.8379 5.1596 21 1 7.5759 -9.8464 6.1799 22 1 7.3554 -12.2108 5.6870 23 1 7.9573 -10.6557 3.9263 24 6 1.9901 -8.8482 7.2428 25 6 1.0227 -8.7149 6.0641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.8126 -2.5828 3.5683 36 1 3.3338 -2.9655 2.7272 37 1 2.3846 -5.1360 1.9960 38 1 0.8630 -4.7540 2.8370 39 1 1.8883 -7.0348 3.8424 40 1 2.5556 -6.3740 6.5298 41 1 4.0165 -6.8965 5.6574 42 1 2.8805 -9.9184 4.4061 43 1 5.2506 -12.0594 3.4319 44 1 2.2321 -9.8547 7.5843 45 1 1.9435 -8.0862 8.0207 46 1 0.3401 -7.8651 6.0671 47 1 0.6281 -9.6333 5.6297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483744708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:23 Heat of formation + Delta-G solvation = -111.870466 kcal Electronic energy + Delta-G solvation = -26320.713493 eV Core-core repulsion = 22437.590032 eV Total energy + Delta-G solvation = -3883.123461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84633 -39.02645 -38.03345 -37.44732 -36.84461 -35.32652 -34.81317 -34.15224 -31.66158 -29.10572 -28.38469 -28.03445 -25.99276 -25.35285 -23.25092 -21.57758 -21.21401 -20.60778 -19.84014 -19.15680 -18.61975 -17.59064 -17.39288 -17.30121 -16.79606 -16.63820 -16.44054 -15.96610 -15.68360 -15.45386 -15.03290 -14.83808 -14.78014 -14.45989 -14.18839 -13.71546 -13.57554 -13.48112 -13.40765 -13.14871 -13.01576 -12.98815 -12.96791 -12.85253 -12.47091 -12.41114 -12.29329 -12.18884 -12.00497 -11.96732 -11.92634 -11.73444 -11.60640 -11.21643 -11.02191 -10.97674 -10.58093 -10.03778 -9.04522 -7.97626 -5.26480 -0.99910 1.44555 1.45943 1.54895 1.59588 1.82494 2.13253 2.51403 2.66820 3.09330 3.09671 3.36727 3.41069 3.55766 3.65351 3.74754 3.82068 3.88572 3.88924 4.05296 4.18778 4.30579 4.36939 4.39242 4.53292 4.58103 4.68272 4.76514 4.81532 4.82160 4.86000 4.93506 4.94623 5.01491 5.03687 5.18144 5.20933 5.36174 5.37573 5.40470 5.47160 5.54083 6.25551 6.56739 7.21033 7.31642 8.05070 8.28284 9.24900 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002276 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.916947 B =12297.380681 C =13016.608625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.093 4.093 3 C -0.141 4.141 4 C -0.593 4.593 5 S 2.424 3.576 6 O -0.978 6.978 7 O -0.961 6.961 8 C -0.594 4.594 9 C -0.141 4.141 10 C 0.515 3.485 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.158 3.842 14 C 0.099 3.901 15 N -0.699 5.699 16 C -0.229 4.229 17 H 0.070 0.930 18 C -0.070 4.070 19 N -0.964 5.964 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.295 1.295 24 C -0.185 4.185 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.411 0.589 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 25.017 -4.406 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.725 4.725 5 S 2.611 3.389 6 O -0.975 6.975 7 O -0.958 6.958 8 C -0.722 4.722 9 C -0.181 4.181 10 C 0.301 3.699 11 O -0.462 6.462 12 N -0.358 5.358 13 C 0.032 3.968 14 C 0.006 3.994 15 N -0.338 5.338 16 C -0.360 4.360 17 H 0.088 0.912 18 C -0.263 4.263 19 N -0.615 5.615 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.223 1.223 24 C -0.225 4.225 25 C -0.191 4.191 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.494 25.032 -4.448 27.505 hybrid contribution 1.391 -0.927 0.241 1.689 sum -9.103 24.105 -4.207 26.108 Atomic orbital electron populations 1.22418 0.94331 1.03880 1.04007 1.20956 0.96531 0.98782 0.95013 1.21827 1.01667 0.93344 1.03095 1.30287 1.13910 1.19775 1.08511 1.07749 0.75231 0.79362 0.76553 1.93555 1.76645 1.76063 1.51263 1.93534 1.28898 1.86672 1.86705 1.30125 1.15246 1.04160 1.22705 1.21479 1.05343 0.94299 0.97006 1.20762 0.79382 0.81808 0.87901 1.90652 1.43893 1.58246 1.53366 1.45910 1.56700 1.09677 1.23525 1.20986 0.97421 0.92208 0.86151 1.20383 0.93079 0.88675 0.97237 1.41844 1.07258 1.44369 1.40329 1.19446 0.87202 1.11256 1.18119 0.91178 1.25454 1.01999 0.98637 1.00211 1.69792 1.36814 1.23338 1.31549 0.85203 0.80897 0.77305 0.77158 1.19434 1.22020 1.22257 1.23377 1.04334 1.02449 0.92338 1.23152 0.90698 1.03598 1.01618 0.90644 0.90801 0.91781 0.90324 0.91621 0.91536 0.91307 0.81956 0.82357 0.82619 0.83674 0.86564 0.84967 0.75311 0.90612 0.94149 0.78916 0.94046 0.90474 0.87448 0.86251 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 8.83 71.98 0.64 -1.75 16 2 C -0.09 -1.03 2.92 -10.79 -0.03 -1.06 16 3 C -0.14 -1.09 9.19 71.98 0.66 -0.43 16 4 C -0.59 -4.98 5.26 71.98 0.38 -4.60 16 5 S 2.42 37.66 4.51 -56.49 -0.25 37.41 16 6 O -0.98 -23.36 18.10 -127.37 -2.31 -25.67 16 7 O -0.96 -19.84 15.46 -127.37 -1.97 -21.81 16 8 C -0.59 -9.12 5.09 71.98 0.37 -8.75 16 9 C -0.14 -2.82 5.71 29.85 0.17 -2.65 16 10 C 0.52 14.61 7.83 87.66 0.69 15.30 16 11 O -0.58 -20.09 15.98 -3.04 -0.05 -20.14 16 12 N -0.71 -20.77 5.51 -463.06 -2.55 -23.32 16 13 C 0.16 5.45 5.73 86.38 0.49 5.94 16 14 C 0.10 3.57 2.15 3.60 0.01 3.57 16 15 N -0.70 -33.03 5.49 -303.32 -1.67 -34.69 16 16 C -0.23 -12.27 9.56 84.03 0.80 -11.47 16 17 H 0.07 3.73 7.77 -2.91 -0.02 3.71 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 19 N -0.96 -57.48 13.06 21.65 0.28 -57.19 16 20 Si 0.96 46.03 29.55 68.60 2.03 48.06 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 24 C -0.18 -5.94 10.11 30.62 0.31 -5.63 16 25 C -0.15 -4.35 10.14 30.62 0.31 -4.04 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 1.07 5.41 -2.39 -0.01 1.06 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.16 1.85 8.10 -2.39 -0.02 1.83 16 36 H 0.15 2.08 8.10 -2.39 -0.02 2.06 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.13 2.00 8.14 -2.39 -0.02 1.99 16 39 H 0.41 10.74 8.48 -92.71 -0.79 9.95 16 40 H 0.08 2.38 7.94 -2.39 -0.02 2.36 16 41 H 0.04 1.67 7.73 -2.39 -0.02 1.65 16 42 H 0.38 19.13 8.04 -92.71 -0.75 18.38 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 46 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -78.09 400.80 -1.79 -79.89 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.57 Total: 36.54 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 5.26 Total: -19.07 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.94 Total: -115.21 kcal Atomic # 8 Polarization: -63.29 SS G_CDS: -4.32 Total: -67.61 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.25 Total: 37.41 kcal Total: -78.09 -1.79 -79.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483744708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.984 kcal (2) G-P(sol) polarization free energy of solvation -78.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds