Wall clock time and date at job start Sat Apr 11 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99645 * 2 1 4 4 N 1.46498 * 109.47250 * 124.99617 * 3 2 1 5 5 C 1.46498 * 120.00233 * 264.87412 * 4 3 2 6 6 C 1.50700 * 109.47073 * 263.12268 * 5 4 3 7 7 H 1.07998 * 120.00203 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99676 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99876 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99905 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47330 * 89.99883 * 10 8 6 12 12 H 1.48501 * 109.47361 * 209.99957 * 10 8 6 13 13 H 1.48504 * 109.47267 * 330.00146 * 10 8 6 14 14 C 1.34777 * 119.99602 * 84.87827 * 4 3 2 15 15 O 1.21369 * 119.99951 * 4.00226 * 14 4 3 16 16 C 1.49307 * 119.99975 * 184.27842 * 14 4 3 17 17 O 1.21389 * 119.99992 * 354.37693 * 16 14 4 18 18 N 1.34777 * 120.00017 * 174.37051 * 16 14 4 19 19 C 1.39196 * 120.00019 * 179.97438 * 18 16 14 20 20 C 1.36215 * 126.27223 * 0.03383 * 19 18 16 21 21 C 1.39691 * 107.86061 * 179.97438 * 20 19 18 22 22 N 1.30855 * 108.45714 * 359.97438 * 21 20 19 23 23 N 1.35858 * 126.27176 * 179.71398 * 19 18 16 24 24 C 1.46493 * 126.09931 * 359.97438 * 23 19 18 25 25 C 1.52998 * 109.47472 * 89.99516 * 24 23 19 26 26 C 1.53010 * 117.49564 * 243.62195 * 25 24 23 27 27 C 1.53002 * 117.49829 * 175.00291 * 25 24 23 28 28 H 1.08007 * 119.99601 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00550 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00550 * 179.97438 * 2 1 3 31 31 H 1.09007 * 109.46872 * 4.99939 * 3 2 1 32 32 H 1.08999 * 109.47175 * 245.00371 * 3 2 1 33 33 H 1.08995 * 109.46858 * 23.13003 * 5 4 3 34 34 H 1.09006 * 109.46552 * 143.13105 * 5 4 3 35 35 H 0.97005 * 119.99895 * 179.97438 * 9 8 6 36 36 H 0.96998 * 119.99870 * 0.02562 * 18 16 14 37 37 H 1.08003 * 126.07214 * 359.97438 * 20 19 18 38 38 H 1.07996 * 125.77230 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.47453 * 209.99685 * 24 23 19 40 40 H 1.09007 * 109.46953 * 329.99264 * 24 23 19 41 41 H 1.08995 * 115.55066 * 29.32995 * 25 24 23 42 42 H 1.08992 * 117.49925 * 0.02562 * 26 25 24 43 43 H 1.09002 * 117.49249 * 145.02309 * 26 25 24 44 44 H 1.09001 * 117.49640 * 214.97805 * 27 25 24 45 45 H 1.09000 * 117.50144 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 2.5969 1.9664 2.3910 6 6 3.1313 3.3749 2.4342 7 1 3.7082 3.7592 1.6061 8 6 2.8835 4.1728 3.5310 9 7 2.1813 3.7046 4.5396 10 14 3.5451 5.9188 3.5843 11 1 2.5451 6.8454 2.9954 12 1 3.8086 6.3056 4.9936 13 1 4.8078 5.9937 2.8061 14 6 4.2144 0.7733 1.0135 15 8 4.5706 0.3124 -0.0513 16 6 5.1263 0.7156 2.1944 17 8 4.8110 1.2613 3.2319 18 7 6.2993 0.0576 2.1085 19 6 7.1497 0.0043 3.2093 20 6 6.9253 0.5677 4.4290 21 6 8.0226 0.2777 5.2433 22 7 8.8768 -0.4312 4.5504 23 7 8.3527 -0.6243 3.2658 24 6 8.9891 -1.3698 2.1771 25 6 9.8623 -0.4222 1.3523 26 6 9.4741 -0.1972 -0.1106 27 6 10.7077 -1.0344 0.2336 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3584 2.1317 0.0896 32 1 2.6212 1.4027 -0.9314 33 1 1.5094 1.9880 2.4601 34 1 3.0031 1.3980 3.2277 35 1 2.0073 4.2658 5.3114 36 1 6.5514 -0.3782 1.2794 37 1 6.0537 1.1375 4.7156 38 1 8.1453 0.5864 6.2709 39 1 9.6083 -2.1641 2.5940 40 1 8.2212 -1.8055 1.5377 41 1 10.2840 0.4224 1.8971 42 1 8.5965 -0.7239 -0.4851 43 1 9.6403 0.7958 -0.5283 44 1 11.6854 -0.5922 0.0422 45 1 10.6421 -2.1123 0.0855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815676621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:37 Heat of formation + Delta-G solvation = 86.444123 kcal Electronic energy + Delta-G solvation = -28926.283452 eV Core-core repulsion = 24948.608357 eV Total energy + Delta-G solvation = -3977.675095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35464 -40.04258 -38.08416 -37.71213 -36.01572 -34.57459 -33.34803 -32.55832 -32.11572 -29.04590 -27.58769 -26.94721 -26.47162 -23.96083 -22.75860 -22.67147 -21.72576 -21.10998 -20.21478 -19.73963 -19.03481 -18.00211 -16.86481 -16.58721 -16.12580 -15.79553 -15.45622 -15.33152 -15.06831 -14.91302 -14.55332 -14.31502 -14.10734 -13.59727 -13.45586 -13.24809 -12.98287 -12.73150 -12.53139 -12.31360 -11.91764 -11.79934 -11.72134 -11.60434 -11.21151 -10.94794 -10.90382 -10.78682 -10.74265 -10.53343 -10.39574 -10.30371 -10.03769 -9.72536 -9.29495 -8.83399 -8.79742 -8.32024 -7.98980 -7.80489 -6.05980 -4.09571 1.63623 2.07140 2.33004 2.44040 2.98531 3.16077 3.29666 3.37069 3.40647 3.50349 3.78761 4.01075 4.33688 4.42734 4.46192 4.66687 4.74645 4.82012 4.99833 5.20953 5.21999 5.30581 5.32060 5.36692 5.39542 5.63007 5.65438 5.74928 5.78939 5.83441 5.91087 6.02435 6.15219 6.15960 6.38958 6.52907 6.78629 6.91928 6.96013 7.09551 7.28176 7.37613 7.44947 7.81612 7.92324 8.01289 8.13551 8.22450 8.51786 8.91759 9.54163 11.02605 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.004270 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.907382 B = 6555.466379 C = 8178.067932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.141 3.859 4 N -0.551 5.551 5 C 0.220 3.780 6 C -0.524 4.524 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.887 5.887 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.514 3.486 15 O -0.559 6.559 16 C 0.497 3.503 17 O -0.417 6.417 18 N -0.636 5.636 19 C 0.316 3.684 20 C -0.279 4.279 21 C 0.061 3.939 22 N -0.299 5.299 23 N -0.390 5.390 24 C 0.166 3.834 25 C -0.177 4.177 26 C -0.177 4.177 27 C -0.168 4.168 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.034 0.966 34 H 0.077 0.923 35 H 0.263 0.737 36 H 0.413 0.587 37 H 0.179 0.821 38 H 0.185 0.815 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.740 -10.383 -6.811 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.180 4.180 3 C 0.018 3.982 4 N -0.280 5.280 5 C 0.102 3.898 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.131 4.131 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.200 1.200 14 C 0.296 3.704 15 O -0.441 6.441 16 C 0.278 3.722 17 O -0.282 6.282 18 N -0.287 5.287 19 C 0.097 3.903 20 C -0.310 4.310 21 C -0.125 4.125 22 N -0.121 5.121 23 N -0.179 5.179 24 C 0.044 3.956 25 C -0.197 4.197 26 C -0.214 4.214 27 C -0.206 4.206 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.196 0.804 38 H 0.201 0.799 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.647 -10.758 -6.495 15.842 hybrid contribution -0.242 1.278 -0.353 1.348 sum 9.405 -9.480 -6.848 15.007 Atomic orbital electron populations 1.23813 0.95703 1.01813 1.00931 1.23305 0.96147 0.98984 0.99538 1.20620 0.92073 0.95451 0.90045 1.48278 1.11701 1.51484 1.16544 1.20181 0.96611 0.93728 0.79299 1.21212 1.34662 0.96801 1.03546 0.92738 1.24792 0.94895 0.98297 0.95132 1.69915 1.38887 1.36630 1.07074 0.86579 0.79299 0.84628 0.77377 1.20753 1.21027 1.20030 1.19463 0.83247 0.80328 0.87385 1.90662 1.75412 1.49562 1.28447 1.20366 0.81614 0.80001 0.90232 1.90883 1.70092 1.37941 1.29332 1.42588 1.18186 1.54566 1.13311 1.18105 0.85163 0.97289 0.89740 1.21843 1.04744 1.12814 0.91624 1.23745 0.92078 0.96516 1.00115 1.77375 1.21893 1.23946 0.88886 1.48676 1.13750 1.44571 1.10919 1.21140 0.96136 0.92804 0.85527 1.22754 1.03262 1.02580 0.91063 1.23143 0.99256 1.02041 0.96996 1.22948 0.95982 0.99784 1.01855 0.88655 0.88254 0.87624 0.88981 0.89751 0.94812 0.90593 0.92737 0.75018 0.80441 0.79856 0.88078 0.89532 0.86972 0.88249 0.88389 0.88435 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 14.32 29.01 0.42 -1.99 16 2 C -0.16 -2.41 9.81 -36.03 -0.35 -2.76 16 3 C 0.14 2.40 5.80 -5.19 -0.03 2.37 16 4 N -0.55 -11.24 2.47 -177.00 -0.44 -11.67 16 5 C 0.22 5.29 4.75 -5.19 -0.02 5.26 16 6 C -0.52 -13.88 8.37 -34.44 -0.29 -14.17 16 7 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 8 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 9 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 10 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.51 10.21 7.62 -11.65 -0.09 10.12 16 15 O -0.56 -10.89 16.12 5.48 0.09 -10.80 16 16 C 0.50 9.76 7.73 -11.65 -0.09 9.67 16 17 O -0.42 -9.46 9.52 5.46 0.05 -9.41 16 18 N -0.64 -10.35 5.40 -11.80 -0.06 -10.41 16 19 C 0.32 5.25 7.68 -152.85 -1.17 4.08 16 20 C -0.28 -4.96 9.65 -39.77 -0.38 -5.34 16 21 C 0.06 0.94 12.00 -17.43 -0.21 0.73 16 22 N -0.30 -4.66 12.56 30.59 0.38 -4.27 16 23 N -0.39 -5.65 3.64 -60.29 -0.22 -5.87 16 24 C 0.17 1.75 6.55 -4.05 -0.03 1.72 16 25 C -0.18 -1.78 6.01 -90.61 -0.54 -2.33 16 26 C -0.18 -1.63 10.18 -26.72 -0.27 -1.90 16 27 C -0.17 -1.30 10.25 -26.73 -0.27 -1.57 16 28 H 0.10 1.07 8.06 -52.48 -0.42 0.64 16 29 H 0.10 1.24 7.84 -52.49 -0.41 0.83 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.09 1.54 7.68 -51.92 -0.40 1.14 16 32 H 0.08 1.40 7.53 -51.93 -0.39 1.01 16 33 H 0.03 0.84 8.02 -51.93 -0.42 0.43 16 34 H 0.08 1.98 5.37 -51.93 -0.28 1.70 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.41 5.74 7.47 -40.82 -0.31 5.43 16 37 H 0.18 3.59 5.83 -52.48 -0.31 3.28 16 38 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.77 7.26 -51.92 -0.38 0.40 16 41 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -30.87 386.06 -8.33 -39.20 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.23 Total: 9.69 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -3.44 Total: 5.75 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.40 Total: -56.54 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.14 Total: -20.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.87 -8.33 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815676621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.646 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds