Wall clock time and date at job start Sat Apr 11 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.51250 * 2 1 4 4 C 1.53283 * 109.51038 * 239.90016 * 2 1 3 5 5 N 1.47169 * 108.55230 * 187.04597 * 4 2 1 6 6 C 1.34771 * 121.07495 * 231.26118 * 5 4 2 7 7 O 1.21518 * 120.00508 * 7.11296 * 6 5 4 8 8 C 1.48151 * 119.99820 * 187.11388 * 6 5 4 9 9 C 1.39440 * 120.10005 * 188.21484 * 8 6 5 10 10 N 1.32080 * 119.87546 * 180.02562 * 9 8 6 11 11 C 1.32129 * 120.07320 * 0.02562 * 10 9 8 12 12 C 1.38728 * 120.19656 * 0.02562 * 11 10 9 13 13 N 1.31807 * 120.12441 * 359.97438 * 12 11 10 14 14 C 1.47334 * 117.84289 * 51.52464 * 5 4 2 15 15 C 1.52797 * 108.19631 * 310.51286 * 14 5 4 16 16 C 1.54370 * 110.33161 * 173.65989 * 15 14 5 17 17 C 1.54457 * 102.87662 * 152.54324 * 16 15 14 18 18 N 1.47081 * 107.29638 * 338.50220 * 17 16 15 19 19 C 1.36939 * 125.63151 * 179.00367 * 18 17 16 20 20 H 1.08004 * 119.99918 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00016 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99625 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47099 * 60.00376 * 23 21 19 25 25 H 1.48500 * 109.47186 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47511 * 300.00089 * 23 21 19 27 27 C 1.47569 * 108.73841 * 359.00945 * 18 17 16 28 28 O 1.41877 * 111.38997 * 50.25060 * 15 14 5 29 29 H 1.08998 * 109.47192 * 180.10317 * 1 2 3 30 30 H 1.09006 * 109.47038 * 300.10129 * 1 2 3 31 31 H 1.08997 * 109.47027 * 60.09785 * 1 2 3 32 32 H 1.08993 * 109.62444 * 67.31982 * 4 2 1 33 33 H 1.09005 * 109.62103 * 306.75915 * 4 2 1 34 34 H 1.08000 * 120.06156 * 359.75656 * 9 8 6 35 35 H 1.08002 * 119.90262 * 179.97438 * 11 10 9 36 36 H 1.07999 * 119.93906 * 179.97438 * 12 11 10 37 37 H 1.09004 * 109.63804 * 70.26248 * 14 5 4 38 38 H 1.08998 * 109.64347 * 190.89122 * 14 5 4 39 39 H 1.09002 * 110.73244 * 270.89378 * 16 15 14 40 40 H 1.09002 * 110.73113 * 34.01827 * 16 15 14 41 41 H 1.08998 * 109.88011 * 97.93031 * 17 16 15 42 42 H 1.09004 * 109.88085 * 218.92818 * 17 16 15 43 43 H 0.97002 * 119.99107 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.37573 * 264.48576 * 27 18 17 45 45 H 1.09001 * 110.37663 * 142.14465 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2500 5 7 3.5035 -0.8621 -1.1459 6 6 4.3122 -0.4730 -2.1514 7 8 3.8511 0.1172 -3.1084 8 6 5.7633 -0.7649 -2.0901 9 6 6.6273 -0.2185 -3.0384 10 7 7.9202 -0.4820 -2.9799 11 6 8.3942 -1.2623 -2.0248 12 6 7.5373 -1.8084 -1.0803 13 7 6.2457 -1.5506 -1.1315 14 6 4.0536 -1.4443 0.0907 15 6 3.4216 -0.7227 1.2800 16 6 3.8423 -1.3985 2.6027 17 6 3.7637 -0.2400 3.6213 18 7 3.8526 1.0166 2.8622 19 6 3.8013 2.2765 3.3961 20 1 3.8761 3.1397 2.7514 21 6 3.6530 2.4443 4.7661 22 7 3.5613 1.3922 5.5518 23 14 3.5838 4.1629 5.4946 24 1 2.4314 4.8996 4.9162 25 1 3.4221 4.0700 6.9678 26 1 4.8420 4.8856 5.1788 27 6 4.0061 0.6954 1.4300 28 8 2.0081 -0.6777 1.1664 29 1 -0.3633 -1.0276 0.0019 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5123 -0.8908 32 1 1.7911 -0.1444 -2.1379 33 1 1.5850 -1.7122 -1.3135 34 1 6.2393 0.4155 -3.8220 35 1 9.4519 -1.4764 -1.9797 36 1 7.9292 -2.4461 -0.3017 37 1 3.8142 -2.5069 0.1334 38 1 5.1348 -1.3081 0.1104 39 1 3.1458 -2.1938 2.8682 40 1 4.8588 -1.7854 2.5320 41 1 2.8161 -0.2824 4.1584 42 1 4.5923 -0.3093 4.3261 43 1 3.4574 1.5095 6.5090 44 1 5.0595 0.7033 1.1501 45 1 3.4452 1.4036 0.8201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071128921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:50 Heat of formation + Delta-G solvation = 33.132760 kcal Electronic energy + Delta-G solvation = -30093.044647 eV Core-core repulsion = 26113.057797 eV Total energy + Delta-G solvation = -3979.986849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67733 -40.24691 -38.68837 -36.21660 -35.30551 -34.20969 -33.09000 -32.01813 -31.26913 -29.38067 -28.21937 -27.14496 -25.90093 -25.11842 -24.53484 -23.66726 -21.85015 -20.61384 -20.03671 -19.11727 -18.18139 -17.50401 -17.17471 -16.91482 -16.41901 -16.01813 -15.62347 -15.42581 -14.85272 -14.65604 -14.45691 -14.10246 -13.94523 -13.60600 -13.44287 -13.27172 -13.03104 -12.63730 -12.36525 -12.16751 -12.00667 -11.77749 -11.72614 -11.50714 -11.13318 -10.95432 -10.85533 -10.83578 -10.53368 -10.36578 -10.21987 -10.11479 -9.96844 -9.78525 -9.67008 -9.51660 -9.10038 -8.56794 -8.33230 -6.80066 -5.68973 -3.01780 0.08620 0.68121 2.50136 2.69177 3.41513 3.45754 3.46137 3.46915 3.59653 3.85201 3.97285 4.07933 4.36348 4.50300 4.75186 4.80295 4.86087 5.07456 5.12656 5.16857 5.20287 5.33228 5.49836 5.54089 5.57692 5.68196 5.73265 5.74686 5.84175 5.90126 6.09657 6.13602 6.20079 6.28758 6.42081 6.46187 6.48940 6.57937 6.64936 6.75149 7.17655 7.33663 7.55413 7.65196 7.75662 7.85623 7.90282 8.27947 9.24110 9.83770 10.49916 11.42694 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004269 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.750005 B = 6557.525774 C = 7657.158957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.068 0.932 4 C 0.082 3.918 5 N -0.588 5.588 6 C 0.576 3.424 7 O -0.534 6.534 8 C 0.034 3.966 9 C 0.110 3.890 10 N -0.439 5.439 11 C 0.073 3.927 12 C 0.048 3.952 13 N -0.402 5.402 14 C 0.069 3.931 15 C 0.089 3.911 16 C -0.128 4.128 17 C 0.183 3.817 18 N -0.597 5.597 19 C -0.228 4.228 20 H 0.074 0.926 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.122 3.878 28 O -0.349 6.349 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 -10.078 -14.674 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 H 0.086 0.914 4 C -0.041 4.041 5 N -0.318 5.318 6 C 0.362 3.638 7 O -0.411 6.411 8 C -0.106 4.106 9 C -0.049 4.049 10 N -0.153 5.153 11 C -0.088 4.088 12 C -0.113 4.113 13 N -0.120 5.120 14 C -0.054 4.054 15 C 0.048 3.952 16 C -0.167 4.167 17 C 0.058 3.942 18 N -0.323 5.323 19 C -0.356 4.356 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.213 1.213 27 C -0.005 4.005 28 O -0.268 6.268 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.200 0.800 35 H 0.194 0.806 36 H 0.198 0.802 37 H 0.091 0.909 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.977 -9.724 -14.843 18.185 hybrid contribution 0.170 0.942 0.437 1.052 sum 4.147 -8.782 -14.406 17.374 Atomic orbital electron populations 1.21673 0.92430 1.02760 1.02828 1.22425 0.95342 0.96246 0.84629 0.91439 1.22491 0.79067 1.02019 1.00485 1.48057 1.06765 1.60236 1.16787 1.17630 0.84237 0.79156 0.82781 1.90780 1.75328 1.41398 1.33632 1.22195 0.96196 0.97782 0.94416 1.23806 0.88550 0.95486 0.97085 1.68630 1.13862 1.11421 1.21386 1.24117 1.02323 0.91950 0.90444 1.24084 0.89541 0.98402 0.99323 1.68526 1.14678 1.10566 1.18213 1.23477 1.03315 0.97169 0.81428 1.22502 0.81359 0.96755 0.94584 1.22816 1.00063 0.99887 0.93887 1.21150 1.01191 0.81302 0.90545 1.44393 1.85938 1.02511 0.99486 1.18970 1.43339 0.82546 0.90763 0.90813 1.24763 1.02132 0.97329 0.95972 1.69952 1.56305 1.27010 1.03524 0.86219 0.77867 0.83673 0.78112 1.21205 1.21531 1.21254 1.21883 0.96554 0.93347 0.88679 1.87829 1.20164 1.76543 1.42234 0.91901 0.91035 0.91218 0.88260 0.90499 0.80033 0.80601 0.80233 0.90906 0.83878 0.90938 0.90943 0.93197 0.93872 0.93730 0.96506 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.57 37.16 0.36 -1.43 16 2 C 0.07 1.13 3.20 -26.58 -0.08 1.05 16 3 H 0.07 1.20 6.26 -51.93 -0.33 0.88 16 4 C 0.08 1.12 5.92 -3.53 -0.02 1.10 16 5 N -0.59 -8.69 2.95 -173.43 -0.51 -9.20 16 6 C 0.58 8.61 7.68 -12.19 -0.09 8.52 16 7 O -0.53 -8.83 15.86 5.35 0.08 -8.74 16 8 C 0.03 0.44 6.59 -82.84 -0.55 -0.10 16 9 C 0.11 1.28 10.77 -17.00 -0.18 1.10 16 10 N -0.44 -4.70 10.49 -12.71 -0.13 -4.83 16 11 C 0.07 0.58 11.23 -17.24 -0.19 0.38 16 12 C 0.05 0.40 11.22 -17.38 -0.20 0.21 16 13 N -0.40 -4.68 6.31 -9.61 -0.06 -4.74 16 14 C 0.07 1.02 4.71 -3.69 -0.02 1.00 16 15 C 0.09 1.62 0.83 -89.42 -0.07 1.55 16 16 C -0.13 -2.38 6.12 -25.25 -0.15 -2.53 16 17 C 0.18 4.47 5.38 -2.96 -0.02 4.46 16 18 N -0.60 -15.55 3.40 -170.32 -0.58 -16.13 16 19 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 20 H 0.07 2.05 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -27.18 10.31 55.49 0.57 -26.60 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.12 2.64 6.19 -2.87 -0.02 2.62 16 28 O -0.35 -6.54 9.92 -35.22 -0.35 -6.89 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.33 7.06 -51.93 -0.37 0.96 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.18 1.92 7.67 -52.49 -0.40 1.52 16 35 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.14 2.08 4.03 -74.46 -0.30 1.78 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 41 H 0.05 1.38 7.38 -51.93 -0.38 0.99 16 42 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.02 0.37 7.83 -51.93 -0.41 -0.03 16 45 H 0.04 0.86 6.10 -51.93 -0.32 0.54 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -34.24 358.25 -8.33 -42.57 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.23 Total: 0.77 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.49 Total: 11.02 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.71 Total: -61.51 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.26 Total: -15.64 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.24 -8.33 -42.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071128921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.704 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds