Wall clock time and date at job start Sat Apr 11 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.58220 * 2 1 4 4 C 1.53195 * 109.58616 * 120.27485 * 2 1 3 5 5 C 1.53043 * 109.33953 * 174.40663 * 4 2 1 6 6 C 1.53034 * 109.54045 * 298.68884 * 5 4 2 7 7 H 1.08993 * 109.47422 * 301.36257 * 6 5 4 8 8 N 1.46499 * 109.52337 * 181.29555 * 6 5 4 9 9 C 1.34782 * 119.99783 * 155.11248 * 8 6 5 10 10 O 1.21516 * 120.00034 * 0.02562 * 9 8 6 11 11 C 1.48160 * 119.99792 * 180.02562 * 9 8 6 12 12 C 1.39250 * 119.65758 * 179.72561 * 11 9 8 13 13 C 1.39755 * 118.90511 * 179.75357 * 12 11 9 14 14 C 1.48144 * 120.89073 * 180.28394 * 13 12 11 15 15 N 1.34777 * 119.99972 * 180.22976 * 14 13 12 16 16 O 1.21508 * 120.00072 * 0.23239 * 14 13 12 17 17 C 1.39813 * 118.22092 * 0.51021 * 13 12 11 18 18 C 1.38500 * 119.18596 * 359.74956 * 17 13 12 19 19 N 1.31464 * 121.04139 * 359.97438 * 18 17 13 20 20 C 1.53197 * 109.34130 * 61.31503 * 6 5 4 21 21 N 1.46921 * 109.58978 * 239.56953 * 2 1 3 22 22 C 1.36932 * 120.63141 * 6.62617 * 21 2 1 23 23 H 1.08004 * 120.00172 * 330.16075 * 22 21 2 24 24 C 1.38809 * 120.00284 * 150.16089 * 22 21 2 25 25 N 1.31614 * 120.00019 * 344.48789 * 24 22 21 26 26 Si 1.86801 * 119.99981 * 164.48273 * 24 22 21 27 27 H 1.48504 * 109.47086 * 90.00388 * 26 24 22 28 28 H 1.48503 * 109.47059 * 210.00260 * 26 24 22 29 29 H 1.48497 * 109.47665 * 330.00253 * 26 24 22 30 30 H 1.08998 * 109.47360 * 299.72027 * 1 2 3 31 31 H 1.08999 * 109.47292 * 59.72403 * 1 2 3 32 32 H 1.09004 * 109.47112 * 179.72130 * 1 2 3 33 33 H 1.08995 * 109.50268 * 294.37805 * 4 2 1 34 34 H 1.09000 * 109.49377 * 54.44560 * 4 2 1 35 35 H 1.09002 * 109.45611 * 58.67546 * 5 4 2 36 36 H 1.08994 * 109.45615 * 178.63079 * 5 4 2 37 37 H 0.96997 * 120.00129 * 335.11879 * 8 6 5 38 38 H 1.07998 * 120.54920 * 359.97438 * 12 11 9 39 39 H 0.96999 * 119.99945 * 359.97438 * 15 14 13 40 40 H 0.97005 * 119.99946 * 180.02562 * 15 14 13 41 41 H 1.07999 * 120.40344 * 179.73466 * 17 13 12 42 42 H 1.08005 * 119.47460 * 180.02562 * 18 17 13 43 43 H 1.09002 * 109.59082 * 185.59378 * 20 6 5 44 44 H 1.09006 * 109.58757 * 65.16409 * 20 6 5 45 45 H 0.97007 * 120.00275 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7276 1.2465 5 6 3.5675 -0.8470 1.1718 6 6 3.9570 -1.6657 -0.0611 7 1 3.4985 -2.6527 -0.0016 8 7 5.4142 -1.8059 -0.1153 9 6 5.9671 -2.8482 -0.7668 10 8 5.2569 -3.6714 -1.3096 11 6 7.4409 -2.9904 -0.8212 12 6 8.0044 -4.0731 -1.4913 13 6 9.3964 -4.1890 -1.5372 14 6 10.0427 -5.3197 -2.2434 15 7 11.3866 -5.4163 -2.2725 16 8 9.3610 -6.1599 -2.7964 17 6 10.1627 -3.2119 -0.8948 18 6 9.5219 -2.1697 -0.2456 19 7 8.2099 -2.0876 -0.2262 20 6 3.4652 -0.9486 -1.3224 21 7 2.0226 -0.7011 -1.1935 22 6 1.1539 -1.1155 -2.1675 23 1 0.1398 -1.3822 -1.9087 24 6 1.5766 -1.1930 -3.4874 25 7 2.6873 -0.5926 -3.8590 26 14 0.5690 -2.1494 -4.7362 27 1 -0.4247 -1.2445 -5.3679 28 1 1.4693 -2.7017 -5.7800 29 1 -0.1387 -3.2622 -4.0536 30 1 -0.3634 0.5095 0.8925 31 1 -0.3634 0.5181 -0.8875 32 1 -0.3633 -1.0277 -0.0050 33 1 1.7660 -0.1640 2.1371 34 1 1.6026 -1.7233 1.2940 35 1 4.0065 0.1481 1.0999 36 1 3.9372 -1.3429 2.0693 37 1 5.9812 -1.1487 0.3178 38 1 7.3763 -4.8093 -1.9708 39 1 11.9308 -4.7453 -1.8314 40 1 11.8098 -6.1564 -2.7352 41 1 11.2412 -3.2692 -0.9044 42 1 10.1093 -1.4121 0.2519 43 1 3.6519 -1.5745 -2.1950 44 1 3.9904 0.0003 -1.4316 45 1 2.9826 -0.6464 -4.7814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072129456.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:09 Heat of formation + Delta-G solvation = -14.501089 kcal Electronic energy + Delta-G solvation = -28444.807338 eV Core-core repulsion = 24462.754931 eV Total energy + Delta-G solvation = -3982.052408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.02652 -39.60280 -38.76621 -37.47974 -34.48735 -34.38259 -32.87402 -32.61608 -31.74056 -30.43631 -29.77391 -26.24543 -25.46210 -25.01832 -23.98167 -22.29386 -22.00033 -20.67715 -19.99559 -19.33095 -18.65717 -17.58695 -17.14101 -16.40939 -16.10723 -15.89847 -15.40407 -15.27354 -15.01361 -14.80555 -14.57282 -14.19550 -13.91131 -13.76462 -13.61835 -13.35743 -13.28048 -12.68350 -12.35855 -12.26431 -11.81381 -11.41747 -11.07896 -10.85471 -10.77039 -10.64550 -10.50643 -10.35741 -10.30590 -10.22008 -10.17697 -10.15415 -9.92421 -9.74753 -9.50312 -9.41676 -9.39809 -8.49737 -8.36620 -6.55110 -5.68975 -3.13551 0.19291 0.60906 2.37566 2.88677 3.00312 3.35346 3.46507 3.54389 3.56383 3.80240 4.00821 4.18819 4.39029 4.55388 4.60273 4.69452 5.07143 5.31341 5.39486 5.42074 5.46182 5.54670 5.61966 5.66499 5.75151 6.01120 6.16145 6.16698 6.30448 6.31956 6.34958 6.43752 6.49427 6.54163 6.67717 6.78476 6.79890 6.95230 7.09081 7.17361 7.33695 7.42952 7.76099 7.78139 7.90584 7.96607 8.53980 8.58076 9.29787 9.94217 10.49832 11.39238 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003212 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.803877 B = 8713.983952 C =10223.126760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.696 5.696 9 C 0.563 3.437 10 O -0.519 6.519 11 C 0.093 3.907 12 C -0.057 4.057 13 C -0.100 4.100 14 C 0.565 3.435 15 N -0.848 5.848 16 O -0.522 6.522 17 C -0.128 4.128 18 C 0.096 3.904 19 N -0.440 5.440 20 C 0.169 3.831 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.403 0.597 38 H 0.163 0.837 39 H 0.401 0.599 40 H 0.408 0.592 41 H 0.143 0.857 42 H 0.170 0.830 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.214 -2.268 10.797 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.102 0.898 8 N -0.346 5.346 9 C 0.345 3.655 10 O -0.393 6.393 11 C -0.046 4.046 12 C -0.078 4.078 13 C -0.111 4.111 14 C 0.349 3.651 15 N -0.413 5.413 16 O -0.397 6.397 17 C -0.149 4.149 18 C -0.063 4.063 19 N -0.152 5.152 20 C 0.042 3.958 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.238 0.762 38 H 0.180 0.820 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.160 0.840 42 H 0.187 0.813 43 H 0.111 0.889 44 H 0.036 0.964 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.680 -2.627 10.343 20.651 hybrid contribution 1.016 -0.700 -0.930 1.545 sum 18.696 -3.327 9.412 21.194 Atomic orbital electron populations 1.21800 0.96009 1.01428 1.00133 1.20493 0.93065 0.93560 0.87073 0.95744 1.22048 0.94255 1.01343 0.98924 1.21669 0.97386 0.99716 0.96603 1.22090 0.77329 1.01098 0.98563 0.89818 1.45908 1.08746 1.26037 1.53907 1.17696 0.85278 0.82570 0.79913 1.90864 1.61309 1.42399 1.44767 1.21447 0.95107 0.91827 0.96236 1.22315 0.93972 0.97356 0.94164 1.20254 0.94303 0.96347 1.00237 1.18112 0.82573 0.84799 0.79587 1.43678 1.06722 1.31705 1.59165 1.90884 1.63283 1.41147 1.44368 1.22486 1.01105 0.94558 0.96713 1.22798 0.90043 0.96844 0.96601 1.67492 1.06870 1.25713 1.15170 1.21071 0.83636 0.96955 0.94156 1.44009 1.02584 1.64624 1.19383 1.19113 0.95045 1.38143 0.85980 0.91262 1.25083 0.97773 0.99281 0.97059 1.70001 1.24051 1.43659 1.16658 0.86347 0.79335 0.80050 0.81336 1.21509 1.21584 1.20379 0.94373 0.92030 0.92772 0.92647 0.92053 0.92158 0.92995 0.76232 0.81955 0.76912 0.75992 0.83979 0.81322 0.88881 0.96360 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 2 C 0.16 3.41 3.50 -67.60 -0.24 3.18 16 3 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.17 5.37 -26.61 -0.14 -2.31 16 5 C -0.12 -1.91 5.36 -26.69 -0.14 -2.05 16 6 C 0.11 2.28 2.60 -67.81 -0.18 2.10 16 7 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 8 N -0.70 -12.18 5.07 -54.54 -0.28 -12.45 16 9 C 0.56 10.56 7.78 -12.18 -0.09 10.47 16 10 O -0.52 -11.84 15.98 5.35 0.09 -11.76 16 11 C 0.09 1.40 6.75 -83.05 -0.56 0.84 16 12 C -0.06 -0.81 9.20 -38.64 -0.36 -1.16 16 13 C -0.10 -1.07 5.91 -104.67 -0.62 -1.69 16 14 C 0.56 6.04 8.07 -12.19 -0.10 5.94 16 15 N -0.85 -4.55 8.83 30.60 0.27 -4.28 16 16 O -0.52 -8.05 17.28 5.36 0.09 -7.95 16 17 C -0.13 -0.89 9.62 -38.90 -0.37 -1.27 16 18 C 0.10 0.79 11.17 -17.61 -0.20 0.60 16 19 N -0.44 -5.41 9.51 -9.85 -0.09 -5.50 16 20 C 0.17 4.17 4.86 -3.71 -0.02 4.15 16 21 N -0.58 -14.71 2.99 -164.77 -0.49 -15.20 16 22 C -0.25 -7.03 8.58 -15.06 -0.13 -7.16 16 23 H 0.07 1.87 6.23 -52.48 -0.33 1.54 16 24 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 25 N -0.90 -27.10 11.23 55.49 0.62 -26.48 16 26 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.05 1.05 7.40 -51.93 -0.38 0.66 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.40 5.98 7.93 -40.82 -0.32 5.66 16 38 H 0.16 2.63 7.33 -52.49 -0.38 2.24 16 39 H 0.40 0.78 6.96 -40.82 -0.28 0.50 16 40 H 0.41 1.71 8.93 -40.82 -0.36 1.35 16 41 H 0.14 0.33 6.53 -52.49 -0.34 -0.02 16 42 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.09 2.71 6.15 -51.93 -0.32 2.39 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -36.70 369.49 -8.22 -44.93 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.04 Total: 5.92 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -2.93 Total: 9.45 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 0.03 Total: -63.92 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.70 -8.22 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072129456.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.426 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds