Wall clock time and date at job start Sat Apr 11 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 S 1.81400 * 109.46874 * 174.99852 * 4 2 1 6 6 O 1.42097 * 108.58241 * 294.48948 * 5 4 2 7 7 O 1.42102 * 108.57707 * 65.51348 * 5 4 2 8 8 C 1.81398 * 101.92550 * 180.02562 * 5 4 2 9 9 C 1.50695 * 109.47478 * 180.02562 * 8 5 4 10 10 O 1.21279 * 120.00226 * 0.02562 * 9 8 5 11 11 N 1.34775 * 120.00029 * 179.97438 * 9 8 5 12 12 C 1.47423 * 125.65035 * 180.02562 * 11 9 8 13 13 C 1.54905 * 104.83455 * 204.09416 * 12 11 9 14 14 H 1.09006 * 111.00666 * 81.10141 * 13 12 11 15 15 C 1.53001 * 111.00714 * 204.91564 * 13 12 11 16 16 C 1.55156 * 101.58204 * 322.98740 * 13 12 11 17 17 H 1.08999 * 110.72327 * 277.13863 * 16 13 12 18 18 N 1.46501 * 110.72132 * 153.86137 * 16 13 12 19 19 C 1.36938 * 119.99741 * 155.00107 * 18 16 13 20 20 H 1.07994 * 120.00628 * 0.02562 * 19 18 16 21 21 C 1.38821 * 119.99670 * 180.02562 * 19 18 16 22 22 N 1.31611 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99780 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47406 * 59.99421 * 23 21 19 25 25 H 1.48503 * 109.47292 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.46972 * 299.99462 * 23 21 19 27 27 C 1.47024 * 125.64742 * 359.69670 * 11 9 8 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 36 36 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 37 37 H 1.09006 * 109.46979 * 300.00203 * 8 5 4 38 38 H 1.09000 * 109.46978 * 59.99629 * 8 5 4 39 39 H 1.09007 * 110.36456 * 322.93129 * 12 11 9 40 40 H 1.09000 * 110.36753 * 85.14377 * 12 11 9 41 41 H 1.08996 * 109.47072 * 58.54422 * 15 13 12 42 42 H 1.08998 * 109.47294 * 178.54479 * 15 13 12 43 43 H 1.09008 * 109.46899 * 298.54663 * 15 13 12 44 44 H 0.97004 * 120.00311 * 335.00568 * 18 16 13 45 45 H 0.97010 * 119.99877 * 180.02562 * 22 21 19 46 46 H 1.09003 * 109.88050 * 298.38927 * 27 11 9 47 47 H 1.08997 * 109.88602 * 59.55753 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 16 3.8478 -0.8515 1.1767 6 8 4.1977 -1.6943 0.0875 7 8 4.3991 0.4563 1.2469 8 6 4.2234 -1.7215 2.7235 9 6 5.7125 -1.9222 2.8382 10 8 6.4481 -1.5178 1.9630 11 7 6.2269 -2.5503 3.9140 12 6 7.6578 -2.8122 4.1534 13 6 7.6833 -4.0286 5.1121 14 1 7.5507 -4.9613 4.5637 15 6 8.9765 -4.0557 5.9294 16 6 6.4586 -3.7365 6.0187 17 1 6.7256 -3.0430 6.8161 18 7 5.9146 -4.9795 6.5714 19 6 5.2079 -4.9557 7.7441 20 1 5.0512 -4.0207 8.2614 21 6 4.6929 -6.1336 8.2681 22 7 4.8834 -7.2729 7.6375 23 14 3.7283 -6.1011 9.8674 24 1 2.5377 -5.2277 9.7097 25 1 3.2898 -7.4781 10.2091 26 1 4.5902 -5.5715 10.9546 27 6 5.4545 -3.0817 5.0466 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.7517 -0.1583 2.1370 36 1 1.6053 -1.7198 1.2952 37 1 3.8707 -1.1295 3.5681 38 1 3.7244 -2.6906 2.7256 39 1 8.1605 -3.0562 3.2174 40 1 8.1284 -1.9479 4.6219 41 1 9.0645 -3.1318 6.5009 42 1 8.9569 -4.9049 6.6124 43 1 9.8293 -4.1497 5.2571 44 1 6.0550 -5.8193 6.1067 45 1 4.5232 -8.0960 8.0034 46 1 4.9253 -2.2709 5.5474 47 1 4.7435 -3.8282 4.6927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214984613.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:13 Heat of formation + Delta-G solvation = -100.408108 kcal Electronic energy + Delta-G solvation = -27201.081658 eV Core-core repulsion = 23318.455243 eV Total energy + Delta-G solvation = -3882.626416 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.04748 -37.81589 -37.12582 -36.77119 -35.92893 -34.23077 -32.79671 -30.95867 -30.46275 -28.23339 -27.67352 -27.51016 -26.02746 -24.08830 -21.82091 -20.98685 -20.09373 -19.53598 -18.84728 -17.59528 -17.27988 -16.73723 -16.62302 -16.30871 -15.89041 -15.21879 -15.06604 -14.80879 -14.25906 -14.16917 -13.70383 -13.61286 -13.46639 -13.19794 -12.97547 -12.87888 -12.69366 -12.51286 -12.38210 -12.32795 -12.20249 -12.03932 -11.74956 -11.64945 -11.40396 -11.28260 -11.24112 -11.20166 -11.06182 -10.82066 -10.70656 -10.48791 -10.37704 -10.20051 -10.07445 -9.83225 -9.11075 -8.55537 -7.21474 -5.95161 -3.26871 -0.29126 2.45310 2.57789 2.86445 3.31734 3.37152 3.38344 3.55552 3.81053 4.11821 4.26109 4.29530 4.43995 4.58367 4.65655 4.85280 4.92489 5.01173 5.01960 5.10747 5.13480 5.15225 5.29447 5.46162 5.47138 5.51287 5.55435 5.63892 5.69994 5.74389 5.80556 5.83691 5.89965 6.01313 6.08962 6.12776 6.22748 6.35910 6.37786 6.52955 6.74223 7.49208 7.53582 7.96072 8.21825 9.33942 9.86733 10.21762 11.26374 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.002968 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.192717 B = 9430.299117 C =11041.782514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.184 4.184 4 C -0.617 4.617 5 S 2.451 3.549 6 O -0.921 6.921 7 O -0.919 6.919 8 C -0.655 4.655 9 C 0.554 3.446 10 O -0.543 6.543 11 N -0.600 5.600 12 C 0.111 3.889 13 C -0.115 4.115 14 H 0.085 0.915 15 C -0.133 4.133 16 C 0.177 3.823 17 H 0.071 0.929 18 N -0.710 5.710 19 C -0.253 4.253 20 H 0.072 0.928 21 C -0.006 4.006 22 N -0.928 5.928 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.066 3.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.388 0.612 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 13.100 -11.044 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.242 4.242 4 C -0.745 4.745 5 S 2.629 3.371 6 O -0.918 6.918 7 O -0.916 6.916 8 C -0.782 4.782 9 C 0.340 3.660 10 O -0.423 6.423 11 N -0.332 5.332 12 C -0.012 4.012 13 C -0.135 4.135 14 H 0.103 0.897 15 C -0.190 4.190 16 C 0.064 3.936 17 H 0.089 0.911 18 N -0.349 5.349 19 C -0.384 4.384 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C -0.060 4.060 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.222 0.778 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.354 13.602 -11.972 18.636 hybrid contribution -1.425 -0.781 1.667 2.328 sum -5.778 12.821 -10.305 17.435 Atomic orbital electron populations 1.21813 0.93367 1.02322 1.02407 1.20842 0.98055 0.96546 0.94829 1.22378 1.03788 0.94905 1.03085 1.30543 1.25818 1.10427 1.07749 1.07454 0.77416 0.75937 0.76319 1.93577 1.81296 1.68851 1.48115 1.93547 1.75795 1.36523 1.85692 1.30834 1.03487 1.17428 1.26483 1.18669 0.87224 0.78402 0.81700 1.90829 1.60741 1.51247 1.39458 1.48363 1.09297 1.55597 1.19970 1.22387 0.81064 0.97893 0.99833 1.22680 0.96936 0.97448 0.96449 0.89667 1.21596 0.95267 1.02629 0.99529 1.21253 0.89469 0.90295 0.92545 0.91116 1.42357 1.63483 1.03285 1.25804 1.19197 1.26704 0.93718 0.98768 0.90987 1.24778 1.01071 0.95380 0.99082 1.69647 1.49788 0.97912 1.40126 0.86262 0.79852 0.76658 0.83320 1.21166 1.21608 1.21084 1.23512 0.97230 0.98270 0.86996 0.91899 0.92191 0.92173 0.89501 0.91615 0.89865 0.91443 0.84683 0.84659 0.82409 0.82276 0.90443 0.91101 0.92735 0.91314 0.93068 0.77785 0.93181 0.91889 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.19 37.16 0.34 -0.53 16 2 C -0.08 -0.66 2.92 -90.62 -0.26 -0.92 16 3 C -0.18 -1.55 8.83 37.16 0.33 -1.23 16 4 C -0.62 -4.39 5.26 37.16 0.20 -4.20 16 5 S 2.45 28.73 3.76 -107.50 -0.40 28.33 16 6 O -0.92 -14.31 17.95 -59.51 -1.07 -15.38 16 7 O -0.92 -13.36 15.31 -59.54 -0.91 -14.27 16 8 C -0.66 -7.21 5.48 36.00 0.20 -7.01 16 9 C 0.55 8.86 7.87 -10.99 -0.09 8.77 16 10 O -0.54 -10.47 15.88 2.56 0.04 -10.43 16 11 N -0.60 -9.30 3.33 -170.51 -0.57 -9.86 16 12 C 0.11 1.61 6.37 -2.53 -0.02 1.60 16 13 C -0.12 -1.73 3.27 -88.47 -0.29 -2.02 16 14 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 15 C -0.13 -1.79 9.30 37.16 0.35 -1.44 16 16 C 0.18 3.09 3.07 -66.09 -0.20 2.88 16 17 H 0.07 1.24 7.96 -51.93 -0.41 0.82 16 18 N -0.71 -15.79 5.15 -51.64 -0.27 -16.05 16 19 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 23 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.07 1.03 6.25 -3.05 -0.02 1.01 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.87 5.40 -51.93 -0.28 0.59 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.14 0.67 8.14 -51.92 -0.42 0.24 16 37 H 0.16 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.16 1.35 8.14 -51.92 -0.42 0.93 16 39 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 40 H 0.07 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.39 9.33 7.76 -40.82 -0.32 9.01 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -34.80 391.91 -9.43 -44.22 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.14 Total: 6.95 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.28 Total: -9.83 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.11 Total: -51.30 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.94 Total: -40.07 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 28.73 SS G_CDS: -0.40 Total: 28.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.80 -9.43 -44.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214984613.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.185 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds