Wall clock time and date at job start Sat Apr 11 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 S 1.81399 * 109.46958 * 240.00208 * 2 1 3 5 5 O 1.42101 * 108.57926 * 59.48600 * 4 2 1 6 6 O 1.42102 * 108.57595 * 190.50870 * 4 2 1 7 7 C 1.81401 * 101.92221 * 304.99604 * 4 2 1 8 8 C 1.50701 * 109.46948 * 180.02562 * 7 4 2 9 9 O 1.21276 * 120.00237 * 0.02562 * 8 7 4 10 10 N 1.34775 * 119.99496 * 180.02562 * 8 7 4 11 11 C 1.46502 * 119.99631 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.89014 * 34.29808 * 11 10 8 13 13 C 1.54910 * 111.00363 * 270.41608 * 11 10 8 14 14 N 1.47424 * 104.83606 * 278.93769 * 13 11 10 15 15 C 1.36935 * 125.65079 * 155.90675 * 14 13 11 16 16 H 1.07997 * 119.99807 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99791 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99990 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99669 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46849 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.46792 * 119.99954 * 19 17 15 22 22 H 1.48499 * 109.46771 * 239.99772 * 19 17 15 23 23 C 1.47029 * 108.70145 * 335.87051 * 14 13 11 24 24 C 1.54430 * 107.28001 * 1.06150 * 23 14 13 25 25 C 1.53001 * 110.72482 * 263.84921 * 24 23 14 26 26 C 1.52997 * 110.76153 * 140.54059 * 24 23 14 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47255 * 300.00259 * 7 4 2 35 35 H 1.09000 * 109.46848 * 59.99877 * 7 4 2 36 36 H 0.96999 * 120.00842 * 0.02562 * 10 8 7 37 37 H 1.09003 * 110.36581 * 37.77866 * 13 11 10 38 38 H 1.09003 * 110.36832 * 159.98609 * 13 11 10 39 39 H 0.97000 * 119.99914 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.87761 * 120.47253 * 23 14 13 41 41 H 1.08992 * 109.88263 * 241.48872 * 23 14 13 42 42 H 1.08999 * 109.47094 * 173.46750 * 25 24 23 43 43 H 1.09006 * 109.46608 * 293.46761 * 25 24 23 44 44 H 1.09000 * 109.47244 * 53.46567 * 25 24 23 45 45 H 1.09002 * 109.47129 * 306.51354 * 26 24 23 46 46 H 1.09002 * 109.47074 * 66.51080 * 26 24 23 47 47 H 1.09005 * 109.47117 * 186.50780 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1346 -0.8551 -1.4812 5 8 1.6407 -0.1775 -2.6284 6 8 3.5342 -1.0605 -1.3457 7 6 1.2998 -2.4606 -1.3540 8 6 1.6912 -3.3243 -2.5253 9 8 2.4582 -2.8990 -3.3629 10 7 1.1889 -4.5696 -2.6417 11 6 1.5698 -5.4095 -3.7800 12 1 2.6019 -5.2201 -4.0746 13 6 0.6043 -5.1990 -4.9730 14 7 -0.5706 -6.0324 -4.6593 15 6 -1.8382 -5.8380 -5.1396 16 1 -2.6342 -6.5075 -4.8491 17 6 -2.0998 -4.7804 -5.9998 18 7 -1.1297 -3.9642 -6.3534 19 14 -3.8291 -4.5148 -6.6544 20 1 -4.7307 -5.5615 -6.1098 21 1 -4.3159 -3.1753 -6.2372 22 1 -3.8151 -4.5966 -8.1371 23 6 -0.1558 -7.1074 -3.7461 24 6 1.3493 -6.9119 -3.4609 25 6 2.1942 -7.7911 -4.3851 26 6 1.6658 -7.2057 -1.9932 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.5949 -2.9511 -0.4266 35 1 0.2203 -2.3100 -1.3578 36 1 0.5752 -4.9097 -1.9720 37 1 0.3166 -4.1503 -5.0477 38 1 1.0700 -5.5308 -5.9010 39 1 -1.3126 -3.2250 -6.9542 40 1 -0.7207 -7.0423 -2.8162 41 1 -0.3237 -8.0771 -4.2146 42 1 3.2491 -7.5533 -4.2484 43 1 2.0239 -8.8404 -4.1438 44 1 1.9113 -7.6061 -5.4213 45 1 1.0130 -6.6106 -1.3545 46 1 1.5044 -8.2646 -1.7916 47 1 2.7056 -6.9511 -1.7878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282831329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:56 Heat of formation + Delta-G solvation = -82.241709 kcal Electronic energy + Delta-G solvation = -28414.822692 eV Core-core repulsion = 24532.984031 eV Total energy + Delta-G solvation = -3881.838661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.85154 -38.04158 -36.93952 -35.93048 -35.32754 -33.89789 -33.17414 -30.80005 -30.59281 -28.08928 -27.51281 -26.66390 -25.62821 -23.46697 -22.85028 -20.91818 -19.92949 -18.90339 -18.57728 -17.51821 -16.80497 -16.72476 -16.40021 -15.86540 -15.46945 -15.23146 -14.61928 -14.41419 -13.97971 -13.81589 -13.70116 -13.56693 -13.39803 -13.24152 -12.87006 -12.68389 -12.58055 -12.16259 -11.96337 -11.95079 -11.89157 -11.79100 -11.74033 -11.71487 -11.33549 -11.21659 -11.06420 -10.98756 -10.80040 -10.47374 -10.35161 -10.22006 -10.02653 -9.86492 -9.75429 -9.71312 -8.71328 -8.47881 -6.83243 -5.63563 -3.07576 -0.15022 2.69963 2.77105 3.22539 3.39291 3.43991 3.47763 3.83529 3.89034 4.26486 4.33572 4.47621 4.66491 4.75127 4.86287 4.93105 5.06623 5.14706 5.19948 5.24564 5.27065 5.29015 5.41772 5.51063 5.59239 5.69369 5.73202 5.74929 5.84308 5.98402 6.06838 6.13863 6.20875 6.36026 6.46492 6.55936 6.64311 6.67328 6.90888 7.43747 7.61006 7.74728 7.90500 8.37580 8.42604 9.20989 9.82385 10.46200 11.39154 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.004262 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.876241 B = 6568.064938 C = 8152.916137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.586 4.586 3 C -0.142 4.142 4 S 2.452 3.548 5 O -0.911 6.911 6 O -0.925 6.925 7 C -0.660 4.660 8 C 0.541 3.459 9 O -0.533 6.533 10 N -0.688 5.688 11 C 0.119 3.881 12 H 0.091 0.909 13 C 0.144 3.856 14 N -0.601 5.601 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.915 5.915 19 Si 0.912 3.088 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.143 3.857 24 C -0.087 4.087 25 C -0.129 4.129 26 C -0.132 4.132 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.399 0.601 37 H 0.115 0.885 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 2.642 17.372 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.694 4.694 3 C -0.200 4.200 4 S 2.628 3.372 5 O -0.908 6.908 6 O -0.922 6.922 7 C -0.788 4.788 8 C 0.324 3.676 9 O -0.410 6.410 10 N -0.337 5.337 11 C 0.014 3.986 12 H 0.109 0.891 13 C 0.018 3.982 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.563 5.563 19 Si 0.742 3.258 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.017 3.983 24 C -0.088 4.088 25 C -0.186 4.186 26 C -0.190 4.190 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.234 0.766 37 H 0.133 0.867 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.088 3.344 15.975 17.420 hybrid contribution -1.934 -0.498 0.739 2.130 sum 4.154 2.845 16.714 17.456 Atomic orbital electron populations 1.21789 0.89941 1.03850 1.05171 1.30218 1.07129 1.10232 1.21823 1.21621 1.01974 0.91670 1.04755 1.07619 0.76015 0.76644 0.76912 1.93597 1.81529 1.71106 1.44552 1.93558 1.27286 1.84876 1.86463 1.30881 1.17328 1.23170 1.07374 1.18890 0.81219 0.82549 0.84896 1.90846 1.36003 1.72058 1.42138 1.45634 1.47160 1.13750 1.27177 1.22667 1.00219 0.87790 0.87911 0.89088 1.22343 0.84842 1.00632 0.90370 1.44473 1.05867 1.29062 1.53351 1.19056 0.84488 1.09759 1.22384 0.90513 1.24810 0.97714 0.98003 0.99864 1.69796 1.29763 1.18304 1.38408 0.86053 0.83590 0.77542 0.78592 1.20626 1.21749 1.21710 1.21426 0.90574 0.92703 0.93601 1.21870 0.97084 0.94588 0.95285 1.21690 0.98520 0.98366 1.00057 1.21732 1.01023 1.01095 0.95112 0.90992 0.90232 0.90087 0.84655 0.90461 0.90092 0.90934 0.82774 0.82180 0.76550 0.86743 0.95846 0.93514 0.96143 0.95783 0.92959 0.92632 0.91656 0.93004 0.92598 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.90 37.16 0.33 -0.73 16 2 C -0.59 -4.77 3.35 -26.73 -0.09 -4.86 16 3 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 4 S 2.45 33.48 3.50 -107.50 -0.38 33.10 16 5 O -0.91 -16.58 17.91 -59.50 -1.07 -17.64 16 6 O -0.92 -15.50 17.94 -59.55 -1.07 -16.57 16 7 C -0.66 -7.84 5.68 36.01 0.20 -7.63 16 8 C 0.54 9.73 7.85 -10.99 -0.09 9.64 16 9 O -0.53 -11.97 15.32 2.56 0.04 -11.93 16 10 N -0.69 -11.76 4.62 -51.73 -0.24 -12.00 16 11 C 0.12 2.29 2.61 -65.78 -0.17 2.12 16 12 H 0.09 1.79 7.53 -51.93 -0.39 1.40 16 13 C 0.14 3.52 5.27 -2.53 -0.01 3.51 16 14 N -0.60 -14.80 3.39 -170.00 -0.58 -15.37 16 15 C -0.23 -6.23 10.27 -15.06 -0.15 -6.38 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.91 -27.20 10.09 55.49 0.56 -26.64 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 C 0.14 2.79 6.41 -3.00 -0.02 2.77 16 24 C -0.09 -1.41 0.81 -152.62 -0.12 -1.53 16 25 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 26 C -0.13 -1.65 8.08 37.16 0.30 -1.35 16 27 H 0.07 0.39 6.39 -51.93 -0.33 0.06 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.14 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.15 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.16 1.50 6.77 -51.92 -0.35 1.15 16 36 H 0.40 5.75 7.03 -40.82 -0.29 5.47 16 37 H 0.11 3.28 5.87 -51.93 -0.31 2.98 16 38 H 0.02 0.62 7.81 -51.93 -0.41 0.22 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.02 0.39 7.77 -51.93 -0.40 -0.02 16 41 H 0.02 0.48 7.85 -51.93 -0.41 0.07 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 45 H 0.05 0.60 6.42 -51.93 -0.33 0.27 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 382.69 15.07 5.77 5.77 Total: -1.00 -38.34 382.69 -9.05 -47.39 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -7.81 Total: 4.02 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 0.74 Total: -7.16 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.26 Total: -54.02 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -2.09 Total: -46.14 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 33.48 SS G_CDS: -0.38 Total: 33.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.34 -9.05 -47.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282831329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.847 kcal (2) G-P(sol) polarization free energy of solvation -38.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds