Wall clock time and date at job start Sat Apr 11 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 108.66917 * 2 1 4 4 C 1.55623 * 108.69733 * 242.11970 * 2 1 3 5 5 N 1.47196 * 115.57341 * 195.39813 * 4 2 1 6 6 C 1.34779 * 119.14817 * 137.22378 * 5 4 2 7 7 O 1.21279 * 119.99890 * 359.72568 * 6 5 4 8 8 C 1.50698 * 120.00151 * 179.72599 * 6 5 4 9 9 H 1.09000 * 109.46862 * 39.99824 * 8 6 5 10 10 N 1.46901 * 109.47246 * 159.99938 * 8 6 5 11 11 C 1.53006 * 109.46914 * 279.99876 * 8 6 5 12 12 C 1.52999 * 109.46626 * 174.99639 * 11 8 6 13 13 C 1.53006 * 109.47000 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47240 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99963 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99861 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99980 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47229 * 89.99965 * 18 16 14 20 20 H 1.48500 * 109.46876 * 209.99805 * 18 16 14 21 21 H 1.48499 * 109.47161 * 329.99530 * 18 16 14 22 22 C 1.42840 * 121.70108 * 316.93837 * 5 4 2 23 23 C 1.53802 * 108.16257 * 95.97425 * 22 5 4 24 24 S 1.74658 * 112.73383 * 278.32995 * 23 22 5 25 25 O 1.42097 * 108.32452 * 176.36593 * 24 23 22 26 26 O 1.42099 * 108.32458 * 306.74129 * 24 23 22 27 27 C 1.49581 * 108.71885 * 118.16478 * 2 1 3 28 28 H 1.09004 * 109.47603 * 301.82841 * 1 2 3 29 29 H 1.08994 * 109.47575 * 61.83594 * 1 2 3 30 30 H 1.09008 * 109.46626 * 181.83155 * 1 2 3 31 31 H 1.09007 * 108.41853 * 73.74678 * 4 2 1 32 32 H 1.08996 * 108.23203 * 316.90478 * 4 2 1 33 33 H 1.00893 * 110.99780 * 296.04661 * 10 8 6 34 34 H 1.00906 * 110.99754 * 59.99985 * 10 8 6 35 35 H 1.08993 * 109.46955 * 295.00111 * 11 8 6 36 36 H 1.09000 * 109.47050 * 54.99940 * 11 8 6 37 37 H 1.08993 * 109.47839 * 299.99931 * 12 11 8 38 38 H 1.09000 * 109.47160 * 60.00369 * 12 11 8 39 39 H 1.09004 * 109.47107 * 300.00294 * 13 12 11 40 40 H 1.09000 * 109.46866 * 60.00185 * 13 12 11 41 41 H 0.96992 * 120.00038 * 179.97438 * 17 16 14 42 42 H 1.08999 * 109.72826 * 215.64487 * 22 5 4 43 43 H 1.08996 * 109.72555 * 336.30761 * 22 5 4 44 44 H 1.09000 * 108.82446 * 39.16885 * 23 22 5 45 45 H 1.08998 * 108.82590 * 157.59644 * 23 22 5 46 46 H 1.09007 * 109.23996 * 90.53549 * 27 2 1 47 47 H 1.08999 * 109.21239 * 331.11545 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8789 1.0327 0.0000 4 6 2.0288 -0.6893 -1.3030 5 7 3.4451 -1.0905 -1.3074 6 6 3.7849 -2.2941 -1.8099 7 8 2.9278 -3.0330 -2.2461 8 6 5.2297 -2.7218 -1.8296 9 1 5.7129 -2.4122 -0.9029 10 7 5.3062 -4.1832 -1.9572 11 6 5.9388 -2.0683 -3.0175 12 6 7.4312 -2.4015 -2.9667 13 6 8.1405 -1.7476 -4.1543 14 6 9.6104 -2.0762 -4.1047 15 1 9.9997 -2.6905 -3.3062 16 6 10.4581 -1.5928 -5.0786 17 7 9.9840 -0.8452 -6.0512 18 14 12.2800 -2.0008 -5.0174 19 1 12.5320 -3.2552 -5.7713 20 1 13.0563 -0.8919 -5.6282 21 1 12.7002 -2.1795 -3.6044 22 6 4.4692 -0.2347 -0.7984 23 6 4.7548 -0.6419 0.6570 24 16 3.6089 0.0392 1.7856 25 8 3.9068 -0.4616 3.0816 26 8 3.5646 1.4451 1.5835 27 6 2.0100 -0.6687 1.2489 28 1 -0.3634 0.5420 0.8731 29 1 -0.3634 0.4850 -0.9059 30 1 -0.3633 -1.0272 0.0328 31 1 1.8651 -0.0076 -2.1377 32 1 1.4221 -1.5789 -1.4720 33 1 4.9015 -4.6380 -1.1526 34 1 4.8647 -4.4954 -2.8092 35 1 5.5135 -2.4462 -3.9472 36 1 5.8061 -0.9874 -2.9702 37 1 7.8566 -2.0236 -2.0371 38 1 7.5640 -3.4824 -3.0141 39 1 7.7153 -2.1251 -5.0843 40 1 8.0077 -0.6667 -4.1065 41 1 10.5805 -0.5047 -6.7361 42 1 5.3737 -0.3475 -1.3962 43 1 4.1328 0.8015 -0.8313 44 1 4.7187 -1.7287 0.7317 45 1 5.7554 -0.3041 0.9268 46 1 2.1344 -1.7351 1.0604 47 1 1.2715 -0.5272 2.0381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329933147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:15 Heat of formation + Delta-G solvation = -118.989800 kcal Electronic energy + Delta-G solvation = -27930.266715 eV Core-core repulsion = 24046.834536 eV Total energy + Delta-G solvation = -3883.432178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.93523 -37.92140 -37.13549 -36.40786 -36.15451 -35.34820 -33.41950 -31.63550 -31.41689 -28.51447 -28.24567 -27.01531 -25.29652 -24.39700 -22.39718 -20.80205 -20.14400 -19.55192 -19.18075 -17.89608 -17.36519 -17.12976 -16.59808 -16.44599 -16.20626 -15.85209 -15.71000 -14.72935 -14.52754 -14.42852 -14.17744 -14.11217 -13.68806 -13.52968 -13.10051 -12.89020 -12.83843 -12.63241 -12.52367 -12.40747 -12.36907 -12.32621 -12.03293 -11.81269 -11.55224 -11.45667 -11.25975 -11.10467 -10.79994 -10.72600 -10.65800 -10.48237 -10.33938 -9.68861 -9.31112 -9.21860 -9.10640 -8.71856 -8.33715 -5.99322 -4.01245 -0.35779 2.20433 2.34919 2.50868 3.24920 3.32640 3.38935 3.42216 3.43834 3.89630 3.92740 4.11308 4.32051 4.40390 4.43759 4.47414 4.53900 4.57867 4.66654 4.95005 5.00056 5.01407 5.10186 5.12360 5.19846 5.27433 5.30567 5.36741 5.49200 5.57097 5.67831 5.78194 5.97723 6.07750 6.31660 6.71222 6.79819 6.91405 7.04651 7.15840 7.36707 7.69105 7.77183 7.83356 8.01370 8.44411 9.06262 9.62965 11.12044 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.002838 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.917357 B = 9864.107213 C =10550.482778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.098 3.902 5 N -0.612 5.612 6 C 0.483 3.517 7 O -0.537 6.537 8 C 0.071 3.929 9 H 0.105 0.895 10 N -0.810 5.810 11 C -0.108 4.108 12 C -0.100 4.100 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.123 3.877 23 C -0.697 4.697 24 S 2.460 3.540 25 O -0.946 6.946 26 O -0.937 6.937 27 C -0.597 4.597 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.338 0.662 34 H 0.352 0.648 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.014 0.986 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.142 0.858 45 H 0.161 0.839 46 H 0.129 0.871 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 1.747 14.626 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.113 0.887 4 C -0.024 4.024 5 N -0.345 5.345 6 C 0.270 3.730 7 O -0.413 6.413 8 C -0.045 4.045 9 H 0.122 0.878 10 N -0.339 5.339 11 C -0.146 4.146 12 C -0.138 4.138 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.826 4.826 24 S 2.641 3.359 25 O -0.943 6.943 26 O -0.934 6.934 27 C -0.725 4.725 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.069 0.931 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.160 0.840 45 H 0.178 0.822 46 H 0.148 0.852 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.518 2.075 14.882 24.632 hybrid contribution -0.060 -0.745 -0.538 0.921 sum -19.577 1.330 14.344 24.306 Atomic orbital electron populations 1.21826 0.92488 1.02734 1.02888 1.20886 0.98590 1.00435 0.91121 0.88681 1.22228 0.81620 1.01915 0.96676 1.47429 1.07026 1.17899 1.62174 1.22797 0.93885 0.80301 0.75981 1.90674 1.52028 1.52754 1.45832 1.21956 0.88860 0.90659 1.02979 0.87768 1.59032 1.63703 1.02647 1.08472 1.21748 0.98673 0.98980 0.95166 1.21557 0.90195 1.01688 1.00370 1.19118 0.94693 0.95498 0.92418 1.21259 0.93182 1.31312 1.09867 0.92664 1.25028 0.98744 0.95222 0.95530 1.69963 1.35213 1.34985 1.13487 0.86614 0.85371 0.77932 0.78195 1.20697 1.21298 1.19878 1.20882 0.94304 0.95714 0.89375 1.30872 1.21005 1.15750 1.14974 1.06512 0.77936 0.75975 0.75511 1.93598 1.83492 1.82083 1.35095 1.93570 1.85852 1.27615 1.86393 1.29856 1.22182 1.12920 1.07562 0.91610 0.91537 0.91952 0.90528 0.88553 0.84987 0.83379 0.91601 0.91598 0.93620 0.91700 0.96775 0.96922 0.93064 0.86455 0.87415 0.84008 0.82163 0.85228 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 8.80 37.16 0.33 -0.35 16 2 C -0.09 -0.53 2.39 -90.92 -0.22 -0.75 16 3 H 0.10 0.55 6.87 -51.93 -0.36 0.19 16 4 C 0.10 0.74 5.38 -2.27 -0.01 0.73 16 5 N -0.61 -5.40 2.46 -173.79 -0.43 -5.83 16 6 C 0.48 5.58 6.56 -10.99 -0.07 5.51 16 7 O -0.54 -7.66 15.53 5.56 0.09 -7.58 16 8 C 0.07 0.85 2.28 -68.86 -0.16 0.70 16 9 H 0.10 1.08 5.80 -51.93 -0.30 0.78 16 10 N -0.81 -9.93 8.44 -5.65 -0.05 -9.98 16 11 C -0.11 -1.62 4.53 -26.73 -0.12 -1.74 16 12 C -0.10 -1.92 5.04 -26.73 -0.13 -2.05 16 13 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 18 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 0.94 5.05 -5.55 -0.03 0.92 16 23 C -0.70 -4.60 5.08 37.57 0.19 -4.41 16 24 S 2.46 18.84 5.05 -107.50 -0.54 18.30 16 25 O -0.95 -10.75 18.06 -57.86 -1.04 -11.79 16 26 O -0.94 -9.70 16.40 -57.86 -0.95 -10.64 16 27 C -0.60 -3.32 5.41 35.47 0.19 -3.13 16 28 H 0.06 0.27 8.05 -51.93 -0.42 -0.15 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.84 6.75 -51.93 -0.35 0.49 16 33 H 0.34 3.48 9.06 -39.30 -0.36 3.12 16 34 H 0.35 4.52 8.58 -39.29 -0.34 4.18 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.91 6.27 -51.93 -0.33 0.59 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.30 7.75 -51.93 -0.40 0.89 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.12 0.98 4.80 -51.93 -0.25 0.73 16 43 H 0.11 0.67 7.46 -51.93 -0.39 0.29 16 44 H 0.14 0.80 6.84 -49.10 -0.34 0.46 16 45 H 0.16 0.85 8.14 -49.01 -0.40 0.45 16 46 H 0.13 0.64 7.95 -51.93 -0.41 0.23 16 47 H 0.14 0.56 7.66 -51.93 -0.40 0.16 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -36.80 375.17 -9.67 -46.47 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.53 Total: 2.39 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.58 Total: -17.51 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.26 Total: -41.84 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.91 Total: -30.01 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 18.84 SS G_CDS: -0.54 Total: 18.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.80 -9.67 -46.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329933147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.517 kcal (2) G-P(sol) polarization free energy of solvation -36.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds