Wall clock time and date at job start Sat Apr 11 2020 03:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46995 * 2 1 4 4 C 1.52998 * 109.47116 * 120.00358 * 2 1 3 5 5 C 1.52994 * 109.47511 * 59.99933 * 4 2 1 6 6 C 1.53004 * 109.46833 * 59.99791 * 5 4 2 7 7 C 1.53003 * 109.47538 * 299.99941 * 6 5 4 8 8 C 1.53004 * 109.47044 * 240.00454 * 2 1 3 9 9 C 1.52998 * 109.47243 * 59.99981 * 8 2 1 10 10 N 1.46505 * 109.46724 * 176.14036 * 9 8 2 11 11 C 1.36936 * 119.99618 * 175.03017 * 10 9 8 12 12 H 1.08007 * 120.00201 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99937 * 179.97438 * 11 10 9 14 14 N 1.31616 * 119.99960 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 120.00127 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46710 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.46737 * 120.00256 * 15 13 11 18 18 H 1.48494 * 109.47033 * 240.00560 * 15 13 11 19 19 N 1.46497 * 109.47011 * 180.02562 * 8 2 1 20 20 C 1.34781 * 120.00129 * 301.88925 * 19 8 2 21 21 O 1.21285 * 119.99470 * 355.44103 * 20 19 8 22 22 C 1.50699 * 120.00109 * 175.44617 * 20 19 8 23 23 S 1.81399 * 109.47078 * 179.97438 * 22 20 19 24 24 C 1.81398 * 101.92375 * 179.97438 * 23 22 20 25 25 O 1.42104 * 108.57614 * 65.51197 * 23 22 20 26 26 O 1.42097 * 108.57908 * 294.48926 * 23 22 20 27 27 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47264 * 299.99689 * 1 2 3 29 29 H 1.09008 * 109.47221 * 60.00080 * 1 2 3 30 30 H 1.08999 * 109.47035 * 179.97438 * 4 2 1 31 31 H 1.09007 * 109.47096 * 299.99498 * 4 2 1 32 32 H 1.08995 * 109.47632 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.46973 * 300.00040 * 5 4 2 34 34 H 1.08999 * 109.47137 * 60.00350 * 6 5 4 35 35 H 1.09005 * 109.46854 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.47240 * 300.00345 * 7 6 5 37 37 H 1.08994 * 109.46895 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46959 * 296.13482 * 9 8 2 39 39 H 1.08996 * 109.47157 * 56.13631 * 9 8 2 40 40 H 0.96992 * 120.00122 * 355.02547 * 10 9 8 41 41 H 0.96998 * 120.00232 * 179.97438 * 14 13 11 42 42 H 0.97003 * 120.00444 * 121.88891 * 19 8 2 43 43 H 1.09000 * 109.47079 * 59.99983 * 22 20 19 44 44 H 1.08997 * 109.47327 * 299.99669 * 22 20 19 45 45 H 1.09011 * 109.46473 * 60.00300 * 24 23 22 46 46 H 1.08994 * 109.47368 * 179.97438 * 24 23 22 47 47 H 1.08999 * 109.47124 * 300.00734 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 2.0400 -2.8849 -0.0001 7 6 1.5300 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2493 9 6 1.5300 0.0001 -2.4985 10 7 2.0928 -0.6347 -3.6929 11 6 1.6972 -0.2234 -4.9377 12 1 0.9700 0.5687 -5.0390 13 6 2.2309 -0.8245 -6.0694 14 7 3.1167 -1.7901 -5.9460 15 14 1.6907 -0.2639 -7.7675 16 1 0.6928 0.8277 -7.6342 17 1 2.8689 0.2325 -8.5228 18 1 1.0814 -1.4060 -8.4952 19 7 3.5049 -0.7217 -1.2490 20 6 4.1793 0.4446 -1.2101 21 8 3.5761 1.4957 -1.2589 22 6 5.6827 0.4427 -1.1062 23 16 6.2889 2.1521 -1.0764 24 6 8.0824 1.9116 -0.9499 25 8 5.8308 2.7742 0.1164 26 8 5.9999 2.7569 -2.3293 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 3.1300 -0.7217 1.2489 31 1 1.6767 -0.2075 2.1392 32 1 1.8937 -2.6778 2.1389 33 1 0.4400 -2.1638 1.2492 34 1 3.1300 -2.8849 -0.0002 35 1 1.6763 -3.9125 -0.0004 36 1 0.4400 -2.1637 -1.2494 37 1 1.8929 -2.6778 -2.1393 38 1 0.4422 -0.0595 -2.5338 39 1 1.8357 1.0458 -2.4645 40 1 2.7456 -1.3463 -3.6019 41 1 3.4893 -2.2104 -6.7368 42 1 3.9897 -1.5614 -1.2768 43 1 6.1056 -0.0775 -1.9656 44 1 5.9829 -0.0656 -0.1899 45 1 8.4351 1.3477 -1.8136 46 1 8.5782 2.8819 -0.9229 47 1 8.3117 1.3604 -0.0379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495309607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:38 Heat of formation + Delta-G solvation = -96.858453 kcal Electronic energy + Delta-G solvation = -29109.263426 eV Core-core repulsion = 25226.790935 eV Total energy + Delta-G solvation = -3882.472491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.70516 -38.18532 -36.88854 -35.88810 -34.74322 -33.43182 -32.14224 -31.45224 -30.36467 -29.59895 -29.12111 -26.32937 -25.01505 -22.94509 -21.99171 -21.37527 -20.31267 -18.81335 -18.15926 -17.53721 -17.13489 -16.60152 -16.23109 -15.74345 -15.55972 -15.32545 -14.95830 -14.41005 -14.08061 -13.85289 -13.63715 -13.42820 -13.36484 -13.22796 -13.09097 -12.67986 -12.64916 -12.35195 -12.18503 -11.97921 -11.93090 -11.86707 -11.47334 -11.43039 -11.15410 -11.09517 -10.92332 -10.79837 -10.78835 -10.73226 -10.29678 -10.10334 -10.06259 -9.93173 -9.62898 -9.39692 -8.74784 -8.58556 -6.79926 -5.71019 -2.96232 -0.12712 2.71524 2.75203 3.17440 3.48611 3.55023 3.57198 3.86039 3.97422 4.56602 4.57341 4.60883 4.65466 4.85796 4.87534 4.90470 4.98596 5.14868 5.26738 5.31143 5.41909 5.50133 5.51949 5.65357 5.68000 5.76574 5.79853 5.83324 6.01212 6.07827 6.17014 6.20977 6.21784 6.31776 6.44424 6.51081 6.53622 6.61212 6.72610 6.93097 7.13640 7.70646 7.79783 8.37354 8.49206 9.60930 10.18474 10.54269 11.52653 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008249 B = 0.005791 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.526235 B = 4833.563216 C = 7250.812357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.121 4.121 8 C 0.181 3.819 9 C 0.137 3.863 10 N -0.726 5.726 11 C -0.226 4.226 12 H 0.070 0.930 13 C -0.017 4.017 14 N -0.939 5.939 15 Si 0.905 3.095 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.293 1.293 19 N -0.697 5.697 20 C 0.549 3.451 21 O -0.522 6.522 22 C -0.660 4.660 23 S 2.455 3.545 24 C -0.667 4.667 25 O -0.926 6.926 26 O -0.913 6.913 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.045 0.955 40 H 0.380 0.620 41 H 0.252 0.748 42 H 0.399 0.601 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 -1.745 17.492 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 H 0.111 0.889 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.159 4.159 8 C 0.095 3.905 9 C 0.009 3.991 10 N -0.370 5.370 11 C -0.357 4.357 12 H 0.088 0.912 13 C -0.212 4.212 14 N -0.589 5.589 15 Si 0.737 3.263 16 H -0.206 1.206 17 H -0.220 1.220 18 H -0.221 1.221 19 N -0.347 5.347 20 C 0.332 3.668 21 O -0.399 6.399 22 C -0.788 4.788 23 S 2.631 3.369 24 C -0.815 4.815 25 O -0.924 6.924 26 O -0.910 6.910 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.214 0.786 41 H 0.061 0.939 42 H 0.234 0.766 43 H 0.178 0.822 44 H 0.171 0.829 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.829 -0.140 17.299 18.255 hybrid contribution 0.943 -1.373 -1.066 1.978 sum 6.772 -1.513 16.233 17.654 Atomic orbital electron populations 1.21953 0.94751 1.01899 1.01885 1.21467 0.96186 1.01267 0.93364 0.88892 1.21509 1.00357 0.95376 0.97504 1.21582 1.01062 0.95731 0.97370 1.21562 1.00390 0.98888 0.94832 1.21819 1.01957 0.93840 0.98262 1.20648 0.78066 0.96049 0.95730 1.21214 0.96016 0.96775 0.85105 1.42225 1.51106 1.43383 1.00300 1.19300 1.18588 1.14264 0.83566 0.91249 1.24659 0.99802 0.99144 0.97628 1.69646 1.33289 1.27948 1.28010 0.86125 0.77709 0.77619 0.84874 1.20593 1.21981 1.22087 1.45773 1.07314 1.07700 1.73940 1.18851 0.86278 0.85048 0.76612 1.90801 1.69027 1.30695 1.49340 1.30878 1.05086 1.29873 1.12956 1.07173 0.77306 0.76628 0.75786 1.30437 1.27368 1.12255 1.11471 1.93574 1.78824 1.71360 1.48595 1.93638 1.82348 1.71724 1.43332 0.92256 0.92994 0.91883 0.92429 0.92293 0.92661 0.91654 0.92427 0.92002 0.90114 0.90067 0.95216 0.93729 0.78582 0.93854 0.76598 0.82170 0.82872 0.85178 0.85126 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.15 37.16 0.30 -1.64 16 2 C -0.10 -1.50 2.01 -90.62 -0.18 -1.68 16 3 H 0.09 1.60 6.19 -51.93 -0.32 1.28 16 4 C -0.11 -1.30 5.29 -26.73 -0.14 -1.44 16 5 C -0.12 -1.24 5.65 -26.73 -0.15 -1.39 16 6 C -0.12 -1.31 5.75 -26.73 -0.15 -1.47 16 7 C -0.12 -1.73 4.36 -26.73 -0.12 -1.85 16 8 C 0.18 2.90 0.09 -131.82 -0.01 2.89 16 9 C 0.14 2.91 4.45 -4.04 -0.02 2.89 16 10 N -0.73 -18.34 5.12 -59.90 -0.31 -18.65 16 11 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 12 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 13 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 14 N -0.94 -28.15 13.06 55.49 0.72 -27.43 16 15 Si 0.90 23.13 29.55 -169.99 -5.02 18.11 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 N -0.70 -10.43 3.44 -47.60 -0.16 -10.60 16 20 C 0.55 8.98 7.26 -10.98 -0.08 8.91 16 21 O -0.52 -10.68 11.90 2.55 0.03 -10.65 16 22 C -0.66 -7.07 6.29 36.01 0.23 -6.85 16 23 S 2.46 30.27 4.60 -107.50 -0.49 29.78 16 24 C -0.67 -4.35 10.62 101.05 1.07 -3.28 16 25 O -0.93 -14.39 17.94 -59.53 -1.07 -15.46 16 26 O -0.91 -16.35 17.95 -59.52 -1.07 -17.42 16 27 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.91 6.52 -51.92 -0.34 0.57 16 30 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16 31 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 34 H 0.06 0.59 6.90 -51.93 -0.36 0.23 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 37 H 0.08 1.35 7.22 -51.93 -0.37 0.98 16 38 H 0.03 0.63 6.64 -51.93 -0.34 0.29 16 39 H 0.04 1.08 6.27 -51.93 -0.33 0.75 16 40 H 0.38 9.70 6.57 -40.82 -0.27 9.44 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.40 4.93 7.38 -40.82 -0.30 4.63 16 43 H 0.16 1.38 8.14 -51.92 -0.42 0.95 16 44 H 0.15 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.13 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.13 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -39.74 368.69 -8.61 -48.35 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.30 Total: 10.55 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 0.50 Total: -12.15 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.25 Total: -56.67 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -2.11 Total: -43.53 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Atomic # 16 Polarization: 30.27 SS G_CDS: -0.49 Total: 29.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.74 -8.61 -48.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495309607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.509 kcal (2) G-P(sol) polarization free energy of solvation -39.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds