Wall clock time and date at job start Sat Apr 11 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46922 * 2 1 4 4 C 1.50703 * 109.47206 * 240.00691 * 2 1 3 5 5 H 1.07997 * 119.99713 * 239.99657 * 4 2 1 6 6 C 1.37877 * 120.00082 * 59.99411 * 4 2 1 7 7 N 1.31513 * 120.00002 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99953 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46981 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47005 * 120.00107 * 8 6 4 11 11 H 1.48498 * 109.46797 * 240.00139 * 8 6 4 12 12 N 1.46494 * 109.47364 * 120.00181 * 2 1 3 13 13 C 1.46504 * 119.99742 * 60.00435 * 12 2 1 14 14 S 1.65599 * 120.00381 * 240.00070 * 12 2 1 15 15 O 1.42104 * 106.39905 * 336.46012 * 14 12 2 16 16 O 1.42095 * 106.40452 * 203.54281 * 14 12 2 17 17 N 1.65602 * 107.21657 * 89.99744 * 14 12 2 18 18 C 1.46498 * 119.99612 * 65.28266 * 17 14 12 19 19 C 1.52971 * 109.43031 * 264.81145 * 18 17 14 20 20 C 1.53171 * 109.41331 * 178.08829 * 19 18 17 21 21 C 1.52586 * 109.23470 * 57.70046 * 20 19 18 22 22 C 1.53548 * 113.66312 * 75.68477 * 21 20 19 23 23 O 1.44264 * 85.37007 * 91.93750 * 22 21 20 24 24 C 1.44267 * 93.41360 * 23.84382 * 23 22 21 25 25 C 1.52581 * 113.22469 * 304.01132 * 21 20 19 26 26 C 1.52976 * 109.43359 * 144.63122 * 18 17 14 27 27 H 1.09002 * 109.47443 * 59.99788 * 1 2 3 28 28 H 1.09008 * 109.46713 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47271 * 299.99360 * 1 2 3 30 30 H 0.97003 * 119.99986 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46746 * 269.99398 * 13 12 2 32 32 H 1.08995 * 109.47307 * 29.99413 * 13 12 2 33 33 H 1.09005 * 109.46998 * 149.99889 * 13 12 2 34 34 H 0.97001 * 119.99942 * 244.99790 * 17 14 12 35 35 H 1.08998 * 109.43747 * 24.72295 * 18 17 14 36 36 H 1.09001 * 109.48556 * 298.11783 * 19 18 17 37 37 H 1.08999 * 109.48221 * 58.15958 * 19 18 17 38 38 H 1.08992 * 109.54878 * 297.75944 * 20 19 18 39 39 H 1.09006 * 109.53569 * 177.63167 * 20 19 18 40 40 H 1.09001 * 113.88526 * 206.04711 * 22 21 20 41 41 H 1.08993 * 113.89106 * 337.82602 * 22 21 20 42 42 H 1.09003 * 113.89143 * 222.04196 * 24 23 22 43 43 H 1.09008 * 114.01357 * 90.27903 * 24 23 22 44 44 H 1.09001 * 109.50570 * 296.02512 * 25 21 20 45 45 H 1.09002 * 109.53921 * 175.91958 * 25 21 20 46 46 H 1.09004 * 109.47858 * 301.84318 * 26 18 17 47 47 H 1.08997 * 109.48027 * 61.86555 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5883 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1200 -4.0081 9 1 3.1455 -2.2873 -3.6040 10 1 1.1660 -1.5863 -4.8162 11 1 3.1465 -0.1869 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1141 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7119 -0.8790 2.9813 17 7 1.9607 0.8089 3.3998 18 6 1.1556 -0.0355 4.2858 19 6 -0.2384 -0.2209 3.6838 20 6 -1.0643 -1.1425 4.5863 21 6 -1.1357 -0.5420 5.9872 22 6 -2.1037 0.6445 6.1005 23 8 -3.0870 -0.3438 6.4715 24 6 -2.0941 -1.2854 6.9286 25 6 0.2367 -0.2732 6.5973 26 6 1.0392 0.6316 5.6575 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 0.7087 1.1616 -3.4844 31 1 0.7377 -2.1445 1.9992 32 1 1.5296 -2.5968 0.4706 33 1 2.4631 -2.5820 1.9861 34 1 1.9055 1.7749 3.4682 35 1 1.6357 -1.0079 4.3950 36 1 -0.7316 0.7479 3.6037 37 1 -0.1502 -0.6671 2.6932 38 1 -0.5926 -2.1239 4.6347 39 1 -2.0714 -1.2424 4.1814 40 1 -1.8552 1.3420 6.9004 41 1 -2.3103 1.1379 5.1508 42 1 -2.2932 -2.3154 6.6325 43 1 -1.8414 -1.1861 7.9843 44 1 0.7655 -1.2165 6.7337 45 1 0.1166 0.2196 7.5621 46 1 2.0356 0.7914 6.0697 47 1 0.5309 1.5902 5.5535 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882823402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:28 Heat of formation + Delta-G solvation = -99.831887 kcal Electronic energy + Delta-G solvation = -28974.977986 eV Core-core repulsion = 25092.376557 eV Total energy + Delta-G solvation = -3882.601429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30864 -37.79201 -36.62200 -36.14997 -35.23041 -33.59169 -32.59331 -31.12430 -29.28348 -29.09492 -26.81402 -25.53508 -25.18622 -24.71821 -23.07465 -21.17703 -20.79146 -19.11361 -18.51039 -17.29429 -16.90498 -16.61506 -16.33817 -16.18634 -15.91939 -15.61566 -15.13597 -14.44453 -14.23174 -13.95700 -13.57674 -13.44831 -13.30067 -13.08047 -12.68241 -12.57771 -12.45906 -12.20322 -12.03168 -11.83380 -11.56256 -11.52552 -11.38994 -11.30788 -11.27805 -11.14933 -10.92090 -10.82755 -10.54967 -10.47055 -10.43822 -10.28362 -10.21444 -10.05834 -9.76063 -9.33630 -9.18258 -8.46171 -7.97950 -6.08144 -4.14480 1.22246 3.27120 3.35498 3.38933 3.45760 3.50179 3.90889 4.12854 4.35276 4.39659 4.59312 4.78613 4.86381 4.98588 5.01143 5.05089 5.10120 5.21863 5.23800 5.26830 5.31338 5.39179 5.56256 5.62894 5.64521 5.71012 5.84423 5.87013 5.92186 5.94079 5.98395 5.99694 6.12612 6.27783 6.32862 6.45122 6.67126 6.78326 6.83145 7.03045 7.17109 7.49300 7.62681 7.79052 8.04792 8.27161 8.87853 9.51349 10.97472 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003757 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.443944 B = 7451.366377 C = 8275.726105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.093 3.907 14 S 2.778 3.222 15 O -0.976 6.976 16 O -0.999 6.999 17 N -1.130 6.130 18 C 0.155 3.845 19 C -0.146 4.146 20 C -0.093 4.093 21 C -0.124 4.124 22 C 0.042 3.958 23 O -0.382 6.382 24 C 0.040 3.960 25 C -0.109 4.109 26 C -0.121 4.121 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.012 0.988 30 H 0.262 0.738 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.411 0.589 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -2.144 18.518 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.830 5.830 13 C -0.054 4.054 14 S 2.787 3.213 15 O -0.960 6.960 16 O -0.982 6.982 17 N -0.886 5.886 18 C 0.047 3.953 19 C -0.185 4.185 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.035 4.035 23 O -0.300 6.300 24 C -0.037 4.037 25 C -0.147 4.147 26 C -0.160 4.160 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.745 -2.183 18.336 19.065 hybrid contribution -0.051 0.034 -0.868 0.871 sum -4.796 -2.149 17.468 18.241 Atomic orbital electron populations 1.22134 0.98193 0.99678 1.00602 1.18711 0.91274 0.92966 0.80428 0.92446 1.21377 1.31493 1.13000 0.90077 0.91880 1.24900 0.94965 0.95002 0.98992 1.69869 1.36594 1.22704 1.23649 0.86457 0.78590 0.79679 0.82770 1.19744 1.21026 1.20924 1.57632 1.69853 1.19743 1.35765 1.21380 0.98726 0.82527 1.02753 1.01938 0.73665 0.73196 0.72481 1.93614 1.74476 1.55975 1.71917 1.93520 1.69275 1.60842 1.74560 1.56292 1.62186 1.17254 1.52895 1.20690 0.91207 0.94111 0.89252 1.22284 0.95087 1.00809 1.00326 1.21263 1.01124 0.98844 0.91879 1.23360 0.95614 0.96197 0.97209 1.24016 0.86496 0.92238 1.00703 1.89699 1.28097 1.29121 1.83107 1.23995 0.86605 0.95176 0.97904 1.21528 0.94545 1.00521 0.98153 1.21789 1.00732 0.99107 0.94356 0.89065 0.94892 0.96869 0.92783 0.94311 0.89800 0.91986 0.75666 0.89428 0.91202 0.89249 0.90951 0.90663 0.90353 0.89031 0.89203 0.90311 0.90958 0.91251 0.90997 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.66 37.16 0.32 -2.86 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.71 7.99 -34.44 -0.28 -13.99 16 5 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.99 -19.53 2.77 -115.85 -0.32 -19.85 16 13 C 0.09 1.56 9.41 59.85 0.56 2.13 16 14 S 2.78 52.68 6.13 -107.50 -0.66 52.02 16 15 O -0.98 -22.42 16.70 -57.17 -0.95 -23.37 16 16 O -1.00 -20.13 16.07 -57.17 -0.92 -21.04 16 17 N -1.13 -15.73 5.53 -4.92 -0.03 -15.75 16 18 C 0.16 1.80 2.76 -67.96 -0.19 1.61 16 19 C -0.15 -1.65 5.45 -26.66 -0.15 -1.79 16 20 C -0.09 -0.88 5.06 -26.86 -0.14 -1.02 16 21 C -0.12 -1.02 0.79 -154.37 -0.12 -1.15 16 22 C 0.04 0.37 8.00 37.38 0.30 0.67 16 23 O -0.38 -4.20 12.36 -35.23 -0.44 -4.64 16 24 C 0.04 0.32 8.35 37.38 0.31 0.64 16 25 C -0.11 -0.82 5.10 -26.86 -0.14 -0.96 16 26 C -0.12 -1.08 5.38 -26.66 -0.14 -1.23 16 27 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 28 H 0.03 0.67 7.67 -51.92 -0.40 0.28 16 29 H 0.01 0.24 7.36 -51.93 -0.38 -0.14 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.04 0.54 6.28 -51.93 -0.33 0.22 16 32 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 33 H 0.06 0.99 7.02 -51.93 -0.36 0.63 16 34 H 0.41 5.00 8.84 -34.47 -0.30 4.70 16 35 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 36 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 37 H 0.09 1.18 4.46 -51.93 -0.23 0.95 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.75 8.07 -51.93 -0.42 0.34 16 40 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.09 0.82 7.52 -51.93 -0.39 0.43 16 42 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.08 0.52 8.09 -51.92 -0.42 0.10 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -32.12 369.25 -9.59 -41.71 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.52 Total: 3.41 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.28 Total: -59.43 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.31 Total: -49.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 52.68 SS G_CDS: -0.66 Total: 52.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.12 -9.59 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882823402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.121 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds