Wall clock time and date at job start Sat Apr 11 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 C 1.50694 * 109.47299 * 239.99967 * 2 1 3 5 5 O 1.21286 * 119.99811 * 241.40046 * 4 2 1 6 6 N 1.34779 * 120.00344 * 61.39557 * 4 2 1 7 7 C 1.44962 * 117.32591 * 192.31768 * 6 4 2 8 8 C 1.51775 * 111.99823 * 203.54219 * 7 6 4 9 9 O 1.41322 * 111.63521 * 319.67412 * 8 7 6 10 10 C 1.40785 * 118.40043 * 56.76642 * 9 8 7 11 11 H 1.08999 * 109.34682 * 188.31032 * 10 9 8 12 12 C 1.54200 * 110.22973 * 67.70171 * 10 9 8 13 13 N 1.46875 * 106.39501 * 210.33589 * 12 10 9 14 14 C 1.36942 * 125.36574 * 197.82022 * 13 12 10 15 15 H 1.07997 * 119.99863 * 169.19211 * 14 13 12 16 16 C 1.38809 * 119.99559 * 349.19567 * 14 13 12 17 17 N 1.31607 * 120.00358 * 3.69347 * 16 14 13 18 18 Si 1.86809 * 119.99543 * 183.69455 * 16 14 13 19 19 H 1.48492 * 109.47057 * 94.98830 * 18 16 14 20 20 H 1.48499 * 109.47045 * 214.99089 * 18 16 14 21 21 H 1.48503 * 109.46856 * 334.99019 * 18 16 14 22 22 C 1.46789 * 109.27072 * 17.84201 * 13 12 10 23 23 C 1.44537 * 117.32077 * 12.58044 * 6 4 2 24 24 H 1.09000 * 109.49357 * 285.85320 * 23 6 4 25 25 C 1.50704 * 109.47202 * 119.99256 * 2 1 3 26 26 C 1.38603 * 120.79571 * 59.72855 * 25 2 1 27 27 N 1.32333 * 119.10220 * 179.71648 * 26 25 2 28 28 C 1.31795 * 120.81817 * 0.56526 * 27 26 25 29 29 N 1.31795 * 121.75376 * 359.70174 * 28 27 26 30 30 C 1.32332 * 120.82092 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47096 * 304.61105 * 1 2 3 32 32 H 1.08998 * 109.47041 * 64.61095 * 1 2 3 33 33 H 1.08999 * 109.47058 * 184.61377 * 1 2 3 34 34 H 1.09000 * 108.99769 * 324.33246 * 7 6 4 35 35 H 1.08997 * 108.99317 * 83.09350 * 7 6 4 36 36 H 1.08990 * 109.15826 * 199.01885 * 8 7 6 37 37 H 1.08998 * 108.87299 * 80.13652 * 8 7 6 38 38 H 1.09003 * 110.06967 * 91.10506 * 12 10 9 39 39 H 1.08993 * 110.11850 * 329.59475 * 12 10 9 40 40 H 0.97002 * 120.00141 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.83164 * 239.35555 * 22 13 12 42 42 H 1.09001 * 109.82769 * 118.39311 * 22 13 12 43 43 H 1.07994 * 120.44655 * 359.97438 * 26 25 2 44 44 H 1.07995 * 119.12694 * 179.68375 * 28 27 26 45 45 H 1.07999 * 120.44995 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7086 -1.7111 -1.1192 6 7 1.7302 -0.2338 -2.4544 7 6 2.0009 -1.0944 -3.5890 8 6 2.1732 -0.3044 -4.8735 9 8 1.2425 0.7553 -4.9622 10 6 1.2120 1.7083 -3.9264 11 1 0.3537 2.3657 -4.0657 12 6 2.5094 2.5417 -3.9302 13 7 2.7559 2.9313 -2.5357 14 6 3.5858 3.9423 -2.1301 15 1 3.5731 4.2715 -1.1016 16 6 4.4433 4.5439 -3.0410 17 7 4.4075 4.1934 -4.3090 18 14 5.6480 5.8510 -2.4668 19 1 6.9627 5.2219 -2.1825 20 1 5.8092 6.8764 -3.5288 21 1 5.1297 6.4939 -1.2326 22 6 1.9729 2.0661 -1.6453 23 6 1.1683 1.0958 -2.5284 24 1 0.1321 1.0721 -2.1911 25 6 2.0324 -0.7103 1.2306 26 6 1.7031 -2.0353 1.4693 27 7 2.1673 -2.6278 2.5577 28 6 2.9238 -1.9707 3.4138 29 7 3.2527 -0.7089 3.2223 30 6 2.8299 -0.0526 2.1538 31 1 -0.3633 0.5837 0.8458 32 1 -0.3633 0.4406 -0.9284 33 1 -0.3633 -1.0243 0.0827 34 1 2.9111 -1.6618 -3.3949 35 1 1.1707 -1.7897 -3.7129 36 1 2.0359 -0.9711 -5.7246 37 1 3.1829 0.1051 -4.9027 38 1 2.3819 3.4294 -4.5497 39 1 3.3393 1.9416 -4.3032 40 1 5.0070 4.6135 -4.9455 41 1 1.2926 2.6711 -1.0459 42 1 2.6419 1.5044 -0.9933 43 1 1.0796 -2.5780 0.7743 44 1 3.2835 -2.4796 4.2958 45 1 3.1027 0.9815 2.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083173753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:38 Heat of formation + Delta-G solvation = 40.169012 kcal Electronic energy + Delta-G solvation = -30311.337259 eV Core-core repulsion = 26331.655525 eV Total energy + Delta-G solvation = -3979.681734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.56534 -40.67273 -38.63836 -36.45166 -34.87825 -34.78873 -33.69396 -32.43442 -30.69304 -29.87608 -28.15664 -27.51602 -25.71804 -24.73684 -24.51025 -23.61276 -22.90344 -20.77299 -20.13680 -18.77427 -17.88106 -17.65903 -17.49410 -16.81604 -16.58537 -15.79472 -15.22401 -15.17982 -15.12060 -14.81681 -14.40576 -14.25764 -13.81712 -13.72782 -13.64410 -13.55115 -13.12328 -13.09438 -12.57956 -12.44425 -12.28086 -12.05161 -11.82314 -11.31587 -11.18996 -10.99845 -10.84636 -10.79100 -10.71907 -10.62975 -10.21420 -10.09756 -9.94395 -9.76501 -9.41435 -9.22015 -9.21459 -8.75280 -8.37409 -7.00274 -5.89002 -3.26993 0.84589 1.08044 2.58995 2.94859 3.31413 3.37103 3.38915 3.75608 4.00275 4.08492 4.19578 4.30205 4.40250 4.47318 4.59824 4.75343 4.77897 4.98063 5.00980 5.06480 5.20336 5.25551 5.29640 5.36282 5.41988 5.48132 5.56287 5.62794 5.66181 5.75759 5.84942 5.88467 5.97305 5.98179 6.07277 6.14313 6.32564 6.39419 6.67290 6.91418 7.26974 7.31623 7.37215 7.59847 7.75055 8.03616 8.08357 8.18473 9.02105 9.62497 10.24243 11.21467 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.004688 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.523487 B = 5971.214948 C = 7725.724376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.144 0.856 4 C 0.525 3.475 5 O -0.538 6.538 6 N -0.585 5.585 7 C 0.084 3.916 8 C 0.058 3.942 9 O -0.369 6.369 10 C 0.068 3.932 11 H 0.115 0.885 12 C 0.148 3.852 13 N -0.595 5.595 14 C -0.239 4.239 15 H 0.080 0.920 16 C 0.001 3.999 17 N -0.915 5.915 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.113 3.887 23 C 0.094 3.906 24 H 0.086 0.914 25 C -0.164 4.164 26 C 0.178 3.822 27 N -0.523 5.523 28 C 0.284 3.716 29 N -0.520 5.520 30 C 0.155 3.845 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.255 0.745 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.161 0.839 44 H 0.193 0.807 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 -9.238 5.913 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.161 0.839 4 C 0.312 3.688 5 O -0.415 6.415 6 N -0.319 5.319 7 C -0.039 4.039 8 C -0.019 4.019 9 O -0.286 6.286 10 C 0.009 3.991 11 H 0.132 0.868 12 C 0.023 3.977 13 N -0.323 5.323 14 C -0.367 4.367 15 H 0.098 0.902 16 C -0.197 4.197 17 N -0.561 5.561 18 Si 0.742 3.258 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.013 4.013 23 C -0.011 4.011 24 H 0.103 0.897 25 C -0.168 4.168 26 C 0.012 3.988 27 N -0.236 5.236 28 C -0.004 4.004 29 N -0.233 5.233 30 C -0.010 4.010 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.178 0.822 44 H 0.210 0.790 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.137 -10.081 6.470 15.065 hybrid contribution 0.733 1.069 -0.357 1.345 sum -8.404 -9.012 6.113 13.755 Atomic orbital electron populations 1.21975 0.91607 1.02965 1.03949 1.21078 0.98371 1.02903 0.89417 0.83887 1.20360 0.79168 0.84612 0.84610 1.90682 1.37113 1.27148 1.86532 1.46607 1.63402 1.15856 1.06016 1.21432 1.02593 0.93115 0.86718 1.22233 0.94480 0.88932 0.96280 1.86859 1.59115 1.37328 1.45303 1.23007 1.02671 0.89459 0.83975 0.86753 1.21865 0.90873 0.97660 0.87334 1.44149 1.51631 1.36078 1.00435 1.18996 1.13090 1.09148 0.95454 0.90217 1.24881 0.98880 1.00185 0.95714 1.69923 1.39953 1.44978 1.01250 0.86101 0.81301 0.80684 0.77677 1.21464 1.21556 1.20390 1.22238 0.94057 0.91675 0.93379 1.21923 0.97382 0.81926 0.99858 0.89678 1.21170 1.00900 0.96956 0.97794 1.22948 0.92899 0.90913 0.92066 1.68424 1.11782 1.39288 1.04142 1.24932 0.90553 0.87673 0.97210 1.68434 1.22690 1.10435 1.21787 1.23198 0.89535 1.00301 0.87963 0.90941 0.90237 0.92137 0.89198 0.91938 0.87810 0.92258 0.90097 0.94780 0.93436 0.94039 0.94094 0.82183 0.79003 0.81363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.90 37.16 0.33 -1.08 16 2 C -0.10 -1.20 1.91 -92.92 -0.18 -1.37 16 3 H 0.14 1.84 3.87 -51.93 -0.20 1.64 16 4 C 0.52 8.12 5.93 -10.99 -0.07 8.05 16 5 O -0.54 -9.81 14.48 5.55 0.08 -9.73 16 6 N -0.59 -8.92 3.08 -169.12 -0.52 -9.44 16 7 C 0.08 1.21 6.27 -5.49 -0.03 1.17 16 8 C 0.06 0.85 6.73 36.54 0.25 1.09 16 9 O -0.37 -6.10 10.25 -34.36 -0.35 -6.45 16 10 C 0.07 1.17 3.91 -26.26 -0.10 1.06 16 11 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 12 C 0.15 3.30 5.04 -3.21 -0.02 3.29 16 13 N -0.60 -13.72 3.39 -171.41 -0.58 -14.30 16 14 C -0.24 -6.16 10.23 -15.06 -0.15 -6.31 16 15 H 0.08 1.97 7.83 -52.49 -0.41 1.55 16 16 C 0.00 0.02 5.49 -17.44 -0.10 -0.07 16 17 N -0.92 -25.49 10.37 55.49 0.58 -24.92 16 18 Si 0.91 21.11 29.56 -169.99 -5.02 16.08 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.11 1.98 5.06 -3.41 -0.02 1.96 16 23 C 0.09 1.41 2.71 -68.67 -0.19 1.23 16 24 H 0.09 1.05 5.32 -51.93 -0.28 0.77 16 25 C -0.16 -2.14 4.41 -104.35 -0.46 -2.60 16 26 C 0.18 2.37 9.21 -17.20 -0.16 2.21 16 27 N -0.52 -7.15 10.44 -14.58 -0.15 -7.30 16 28 C 0.28 3.57 12.29 -92.15 -1.13 2.43 16 29 N -0.52 -7.12 10.44 -14.58 -0.15 -7.27 16 30 C 0.16 2.04 10.96 -17.20 -0.19 1.86 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.74 4.78 -51.93 -0.25 0.49 16 33 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 34 H 0.09 1.37 7.20 -51.93 -0.37 1.00 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 38 H 0.08 2.05 6.88 -51.93 -0.36 1.69 16 39 H 0.03 0.86 6.29 -51.93 -0.33 0.54 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.04 0.75 4.63 -51.93 -0.24 0.51 16 43 H 0.16 1.95 7.58 -52.49 -0.40 1.55 16 44 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.17 1.91 8.01 -52.49 -0.42 1.48 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -32.14 345.79 -8.78 -40.91 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.65 Total: 4.28 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -2.21 Total: 12.92 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.83 Total: -63.23 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.27 Total: -16.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.14 -8.78 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083173753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.083 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds