Wall clock time and date at job start Sat Apr 11 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47139 * 2 1 4 4 C 1.50694 * 109.47299 * 239.99967 * 2 1 3 5 5 O 1.21286 * 119.99811 * 241.40046 * 4 2 1 6 6 N 1.34779 * 120.00344 * 61.39557 * 4 2 1 7 7 C 1.44962 * 117.32591 * 192.31768 * 6 4 2 8 8 C 1.51775 * 111.99823 * 203.54219 * 7 6 4 9 9 O 1.41322 * 111.63521 * 319.67412 * 8 7 6 10 10 C 1.40785 * 118.40043 * 56.76642 * 9 8 7 11 11 H 1.08999 * 109.34682 * 188.31032 * 10 9 8 12 12 C 1.54200 * 110.22973 * 67.70171 * 10 9 8 13 13 N 1.46875 * 106.39501 * 210.33589 * 12 10 9 14 14 C 1.36942 * 125.36574 * 197.82022 * 13 12 10 15 15 H 1.07997 * 119.99863 * 169.19211 * 14 13 12 16 16 C 1.38809 * 119.99559 * 349.19567 * 14 13 12 17 17 N 1.31607 * 120.00358 * 3.69347 * 16 14 13 18 18 Si 1.86809 * 119.99543 * 183.69455 * 16 14 13 19 19 H 1.48492 * 109.47057 * 94.98830 * 18 16 14 20 20 H 1.48499 * 109.47045 * 214.99089 * 18 16 14 21 21 H 1.48503 * 109.46856 * 334.99019 * 18 16 14 22 22 C 1.46789 * 109.27072 * 17.84201 * 13 12 10 23 23 C 1.44537 * 117.32077 * 12.58044 * 6 4 2 24 24 H 1.09000 * 109.49357 * 285.85320 * 23 6 4 25 25 C 1.50704 * 109.47202 * 119.99256 * 2 1 3 26 26 C 1.38603 * 120.79571 * 59.72855 * 25 2 1 27 27 N 1.32333 * 119.10220 * 179.71648 * 26 25 2 28 28 C 1.31795 * 120.81817 * 0.56526 * 27 26 25 29 29 N 1.31795 * 121.75376 * 359.70174 * 28 27 26 30 30 C 1.32332 * 120.82092 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47096 * 304.61105 * 1 2 3 32 32 H 1.08998 * 109.47041 * 64.61095 * 1 2 3 33 33 H 1.08999 * 109.47058 * 184.61377 * 1 2 3 34 34 H 1.09000 * 108.99769 * 324.33246 * 7 6 4 35 35 H 1.08997 * 108.99317 * 83.09350 * 7 6 4 36 36 H 1.08990 * 109.15826 * 199.01885 * 8 7 6 37 37 H 1.08998 * 108.87299 * 80.13652 * 8 7 6 38 38 H 1.09003 * 110.06967 * 91.10506 * 12 10 9 39 39 H 1.08993 * 110.11850 * 329.59475 * 12 10 9 40 40 H 0.97002 * 120.00141 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.83164 * 239.35555 * 22 13 12 42 42 H 1.09001 * 109.82769 * 118.39311 * 22 13 12 43 43 H 1.07994 * 120.44655 * 359.97438 * 26 25 2 44 44 H 1.07995 * 119.12694 * 179.68375 * 28 27 26 45 45 H 1.07999 * 120.44995 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7086 -1.7111 -1.1192 6 7 1.7302 -0.2338 -2.4544 7 6 2.0009 -1.0944 -3.5890 8 6 2.1732 -0.3044 -4.8735 9 8 1.2425 0.7553 -4.9622 10 6 1.2120 1.7083 -3.9264 11 1 0.3537 2.3657 -4.0657 12 6 2.5094 2.5417 -3.9302 13 7 2.7559 2.9313 -2.5357 14 6 3.5858 3.9423 -2.1301 15 1 3.5731 4.2715 -1.1016 16 6 4.4433 4.5439 -3.0410 17 7 4.4075 4.1934 -4.3090 18 14 5.6480 5.8510 -2.4668 19 1 6.9627 5.2219 -2.1825 20 1 5.8092 6.8764 -3.5288 21 1 5.1297 6.4939 -1.2326 22 6 1.9729 2.0661 -1.6453 23 6 1.1683 1.0958 -2.5284 24 1 0.1321 1.0721 -2.1911 25 6 2.0324 -0.7103 1.2306 26 6 1.7031 -2.0353 1.4693 27 7 2.1673 -2.6278 2.5577 28 6 2.9238 -1.9707 3.4138 29 7 3.2527 -0.7089 3.2223 30 6 2.8299 -0.0526 2.1538 31 1 -0.3633 0.5837 0.8458 32 1 -0.3633 0.4406 -0.9284 33 1 -0.3633 -1.0243 0.0827 34 1 2.9111 -1.6618 -3.3949 35 1 1.1707 -1.7897 -3.7129 36 1 2.0359 -0.9711 -5.7246 37 1 3.1829 0.1051 -4.9027 38 1 2.3819 3.4294 -4.5497 39 1 3.3393 1.9416 -4.3032 40 1 5.0070 4.6135 -4.9455 41 1 1.2926 2.6711 -1.0459 42 1 2.6419 1.5044 -0.9933 43 1 1.0796 -2.5780 0.7743 44 1 3.2835 -2.4796 4.2958 45 1 3.1027 0.9815 2.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083173753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:36 Heat of formation + Delta-G solvation = 18.296438 kcal Electronic energy + Delta-G solvation = -30312.285725 eV Core-core repulsion = 26331.655525 eV Total energy + Delta-G solvation = -3980.630200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.69886 -41.77763 -39.92900 -37.88909 -36.27061 -35.85451 -34.68713 -34.12694 -32.02793 -31.10397 -29.53926 -28.97236 -26.96081 -26.08571 -25.50912 -24.94641 -24.09446 -22.26801 -21.39486 -20.09187 -19.25426 -18.72442 -18.61062 -18.16078 -17.92686 -17.06756 -16.81015 -16.44007 -16.30757 -15.96692 -15.88005 -15.44906 -15.10333 -14.99933 -14.71025 -14.56276 -14.48783 -14.42283 -14.01541 -13.69385 -13.35416 -13.19044 -13.05611 -12.97249 -12.80712 -12.52167 -12.29375 -12.11204 -11.96470 -11.85007 -11.81433 -11.67506 -11.32949 -11.00039 -10.73001 -10.60938 -10.39836 -10.22511 -9.61459 -8.87901 -7.88470 -5.26526 -0.12516 0.08019 1.40412 1.45906 1.47641 1.55692 1.78990 2.46141 2.72060 2.79006 3.18070 3.23489 3.30196 3.30501 3.44165 3.49833 3.62971 3.68461 3.77910 3.85400 3.92728 4.04637 4.11715 4.16971 4.36433 4.37402 4.44058 4.47977 4.57858 4.67460 4.76183 4.77868 4.82434 4.86234 4.98562 5.04570 5.30549 5.40282 5.44299 5.47505 5.49495 5.68061 5.93028 6.15218 6.17626 6.38852 6.98680 7.06073 7.06449 7.73195 8.34175 9.20616 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011222 B = 0.004688 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.523487 B = 5971.214948 C = 7725.724376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.142 0.858 4 C 0.520 3.480 5 O -0.571 6.571 6 N -0.590 5.590 7 C 0.084 3.916 8 C 0.059 3.941 9 O -0.371 6.371 10 C 0.079 3.921 11 H 0.138 0.862 12 C 0.157 3.843 13 N -0.616 5.616 14 C -0.240 4.240 15 H 0.091 0.909 16 C -0.059 4.059 17 N -0.947 5.947 18 Si 0.971 3.029 19 H -0.295 1.295 20 H -0.296 1.296 21 H -0.261 1.261 22 C 0.108 3.892 23 C 0.103 3.897 24 H 0.132 0.868 25 C -0.168 4.168 26 C 0.171 3.829 27 N -0.538 5.538 28 C 0.280 3.720 29 N -0.536 5.536 30 C 0.145 3.855 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.024 0.976 38 H 0.041 0.959 39 H -0.008 1.008 40 H 0.246 0.754 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.169 0.831 44 H 0.223 0.777 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.084 -9.722 7.488 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.159 0.841 4 C 0.310 3.690 5 O -0.450 6.450 6 N -0.323 5.323 7 C -0.038 4.038 8 C -0.018 4.018 9 O -0.288 6.288 10 C 0.019 3.981 11 H 0.155 0.845 12 C 0.031 3.969 13 N -0.344 5.344 14 C -0.369 4.369 15 H 0.108 0.892 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.800 3.200 19 H -0.223 1.223 20 H -0.223 1.223 21 H -0.185 1.185 22 C -0.017 4.017 23 C -0.001 4.001 24 H 0.149 0.851 25 C -0.173 4.173 26 C 0.005 3.995 27 N -0.252 5.252 28 C -0.007 4.007 29 N -0.250 5.250 30 C -0.020 4.020 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.157 0.843 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.010 0.990 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.186 0.814 44 H 0.239 0.761 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.397 -10.570 8.075 17.517 hybrid contribution 1.465 1.152 -0.824 2.038 sum -9.932 -9.418 7.251 15.489 Atomic orbital electron populations 1.21998 0.88869 1.04011 1.05093 1.21016 1.00470 1.01799 0.87514 0.84145 1.20901 0.78475 0.84311 0.85328 1.90670 1.38566 1.28801 1.86975 1.46755 1.63312 1.15888 1.06357 1.21474 1.03082 0.93184 0.86105 1.22372 0.92385 0.88832 0.98200 1.86870 1.59091 1.37454 1.45366 1.22881 1.00176 0.89480 0.85551 0.84459 1.21566 0.92435 0.96219 0.86684 1.44399 1.51846 1.36442 1.01717 1.19431 1.12614 1.09134 0.95693 0.89159 1.25638 1.00987 1.02737 0.95936 1.70152 1.40764 1.46452 1.02187 0.85170 0.78925 0.78374 0.77567 1.22297 1.22308 1.18499 1.22547 0.94134 0.91806 0.93214 1.21968 0.99192 0.81122 0.97804 0.85074 1.21221 1.01059 0.96984 0.97998 1.23152 0.92980 0.91179 0.92163 1.68471 1.12413 1.39672 1.04598 1.25550 0.89886 0.87512 0.97800 1.68485 1.23225 1.11041 1.22233 1.23505 0.89391 1.01053 0.88020 0.89010 0.89504 0.91413 0.90658 0.89125 0.84256 0.95739 0.94021 0.99028 0.94489 0.90880 0.94264 0.81399 0.76113 0.80103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.90 71.98 0.64 -1.48 16 2 C -0.09 -1.92 1.91 -12.29 -0.02 -1.94 16 3 H 0.14 3.22 3.87 -2.39 -0.01 3.21 16 4 C 0.52 15.15 5.93 87.65 0.52 15.67 16 5 O -0.57 -20.34 14.48 -3.05 -0.04 -20.39 16 6 N -0.59 -16.76 3.08 -807.37 -2.49 -19.25 16 7 C 0.08 2.29 6.27 86.26 0.54 2.83 16 8 C 0.06 1.68 6.73 71.58 0.48 2.16 16 9 O -0.37 -11.75 10.25 -145.85 -1.50 -13.24 16 10 C 0.08 2.57 3.91 30.90 0.12 2.69 16 11 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 12 C 0.16 7.18 5.04 86.71 0.44 7.62 16 13 N -0.62 -28.34 3.39 -696.22 -2.36 -30.69 16 14 C -0.24 -12.37 10.23 84.03 0.86 -11.51 16 15 H 0.09 4.35 7.83 -2.91 -0.02 4.32 16 16 C -0.06 -3.22 5.49 84.86 0.47 -2.76 16 17 N -0.95 -55.15 10.37 21.65 0.22 -54.93 16 18 Si 0.97 44.10 29.56 68.60 2.03 46.13 16 19 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 C 0.11 3.54 5.06 86.63 0.44 3.98 16 23 C 0.10 2.82 2.71 45.56 0.12 2.94 16 24 H 0.13 2.52 5.32 -2.39 -0.01 2.51 16 25 C -0.17 -4.08 4.41 -19.69 -0.09 -4.17 16 26 C 0.17 4.28 9.21 84.70 0.78 5.06 16 27 N -0.54 -13.92 10.44 -200.05 -2.09 -16.01 16 28 C 0.28 6.58 12.29 180.88 2.22 8.81 16 29 N -0.54 -13.92 10.44 -200.05 -2.09 -16.00 16 30 C 0.15 3.60 10.96 84.70 0.93 4.53 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.15 4.78 -2.39 -0.01 1.14 16 33 H 0.07 0.94 7.31 -2.39 -0.02 0.93 16 34 H 0.08 2.28 7.20 -2.39 -0.02 2.26 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.02 0.87 6.73 -2.39 -0.02 0.85 16 38 H 0.04 2.20 6.88 -2.39 -0.02 2.19 16 39 H -0.01 -0.44 6.29 -2.39 -0.02 -0.46 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 42 H 0.04 1.36 4.63 -2.39 -0.01 1.35 16 43 H 0.17 3.79 7.58 -2.91 -0.02 3.77 16 44 H 0.22 3.53 8.06 -2.91 -0.02 3.50 16 45 H 0.18 3.81 8.01 -2.91 -0.02 3.79 16 Total: -1.00 -72.79 345.79 1.17 -71.61 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.03 Total: 18.36 kcal Atomic # 6 Polarization: 25.97 SS G_CDS: 8.45 Total: 34.42 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -8.80 Total: -136.89 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.54 Total: -33.63 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.79 1.17 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083173753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.911 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds