Wall clock time and date at job start Sat Apr 11 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46560 * 2 1 4 4 C 1.50700 * 109.47070 * 119.99242 * 2 1 3 5 5 O 1.21287 * 119.99770 * 98.47213 * 4 2 1 6 6 N 1.34775 * 120.00265 * 278.47747 * 4 2 1 7 7 C 1.44954 * 117.33944 * 357.71921 * 6 4 2 8 8 C 1.51967 * 111.94857 * 203.76619 * 7 6 4 9 9 O 1.41326 * 111.61194 * 319.73369 * 8 7 6 10 10 C 1.40846 * 118.30006 * 56.87604 * 9 8 7 11 11 H 1.08998 * 109.53786 * 187.69533 * 10 9 8 12 12 C 1.53922 * 110.47007 * 68.13119 * 10 9 8 13 13 N 1.46780 * 107.61871 * 221.60505 * 12 10 9 14 14 C 1.36928 * 125.36117 * 178.71198 * 13 12 10 15 15 H 1.08004 * 120.00298 * 179.69353 * 14 13 12 16 16 C 1.38808 * 120.00237 * 359.69712 * 14 13 12 17 17 N 1.31621 * 120.00348 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00221 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47238 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46636 * 299.99682 * 18 16 14 21 21 H 1.48498 * 109.47063 * 59.99763 * 18 16 14 22 22 C 1.46867 * 109.27094 * 358.44994 * 13 12 10 23 23 C 1.44555 * 117.33777 * 177.72352 * 6 4 2 24 24 H 1.09002 * 109.32105 * 286.12318 * 23 6 4 25 25 C 1.50697 * 109.47308 * 239.99926 * 2 1 3 26 26 C 1.38592 * 120.79923 * 299.71854 * 25 2 1 27 27 N 1.32330 * 119.10492 * 179.72251 * 26 25 2 28 28 C 1.31798 * 120.81612 * 0.56496 * 27 26 25 29 29 N 1.31794 * 121.75470 * 359.70648 * 28 27 26 30 30 C 1.32334 * 120.81966 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.46403 * 174.94122 * 1 2 3 32 32 H 1.09001 * 109.47378 * 294.94142 * 1 2 3 33 33 H 1.08999 * 109.47218 * 54.94911 * 1 2 3 34 34 H 1.08996 * 108.98366 * 83.13070 * 7 6 4 35 35 H 1.08999 * 108.91954 * 324.35609 * 7 6 4 36 36 H 1.09000 * 109.04844 * 199.18932 * 8 7 6 37 37 H 1.08990 * 109.05246 * 80.28968 * 8 7 6 38 38 H 1.09001 * 109.94357 * 102.01660 * 12 10 9 39 39 H 1.08994 * 109.71147 * 341.06367 * 12 10 9 40 40 H 0.96996 * 120.00370 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.06819 * 137.28845 * 22 13 12 42 42 H 1.09003 * 110.07070 * 258.80843 * 22 13 12 43 43 H 1.07996 * 120.44775 * 359.97438 * 26 25 2 44 44 H 1.08009 * 119.12245 * 179.68507 * 28 27 26 45 45 H 1.08000 * 120.44954 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 8 2.3804 -1.8701 1.1617 6 7 2.0948 -0.0567 2.4076 7 6 1.7126 1.3415 2.4138 8 6 2.3433 2.0976 3.5713 9 8 2.3413 1.3295 4.7576 10 6 2.9665 0.0676 4.7370 11 1 2.7646 -0.4545 5.6723 12 6 4.4898 0.2240 4.5815 13 7 4.9474 -0.8011 3.6359 14 6 6.2396 -0.9719 3.2164 15 1 6.4813 -1.7606 2.5192 16 6 7.2391 -0.1315 3.6872 17 7 6.9446 0.8299 4.5366 18 14 9.0019 -0.3641 3.1144 19 1 9.8703 0.6533 3.7593 20 1 9.4691 -1.7228 3.4900 21 1 9.0675 -0.2083 1.6391 22 6 3.8021 -1.6186 3.2154 23 6 2.5375 -0.8073 3.5610 24 1 1.7435 -1.4836 3.8777 25 6 2.0324 -0.7104 -1.2304 26 6 1.7126 -2.0387 -1.4632 27 7 2.1672 -2.6280 -2.5574 28 6 2.9238 -1.9709 -3.4135 29 7 3.2527 -0.7090 -3.2222 30 6 2.8306 -0.0529 -2.1533 31 1 -0.3632 -1.0237 -0.0906 32 1 -0.3634 0.4334 0.9318 33 1 -0.3633 0.5902 -0.8413 34 1 0.6278 1.4122 2.4931 35 1 2.0299 1.7988 1.4766 36 1 1.7841 3.0175 3.7422 37 1 3.3715 2.3506 3.3129 38 1 4.9784 0.0822 5.5455 39 1 4.7196 1.2155 4.1917 40 1 7.6429 1.4174 4.8653 41 1 3.8472 -1.8016 2.1418 42 1 3.7989 -2.5647 3.7567 43 1 1.0972 -2.5842 -0.7632 44 1 3.2842 -2.4802 -4.2952 45 1 3.1041 0.9809 -2.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083173754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:43 Heat of formation + Delta-G solvation = 29.571787 kcal Electronic energy + Delta-G solvation = -30260.663088 eV Core-core repulsion = 26280.521823 eV Total energy + Delta-G solvation = -3980.141265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.44992 -40.63774 -38.59555 -36.09695 -35.02468 -34.73143 -33.70411 -32.37168 -30.30858 -30.04637 -28.01193 -27.46294 -25.50624 -24.66104 -24.54478 -23.48551 -22.96089 -20.82889 -19.77371 -18.63586 -17.96978 -17.66915 -17.29322 -16.85727 -16.47384 -15.89053 -15.43648 -15.14464 -14.91253 -14.64157 -14.42570 -14.06962 -13.99462 -13.73595 -13.65947 -13.61289 -13.14771 -12.81301 -12.52390 -12.33941 -12.14489 -12.01563 -11.71865 -11.36478 -11.10654 -10.94753 -10.86520 -10.81874 -10.67465 -10.64494 -10.44615 -10.13317 -9.74543 -9.58048 -9.38679 -9.25796 -8.88362 -8.61130 -8.29548 -6.82204 -5.73124 -3.06353 0.80744 1.07779 2.64157 2.97025 3.39930 3.44010 3.45566 3.74555 4.01267 4.06423 4.17568 4.34131 4.35554 4.48775 4.54632 4.67508 4.79098 4.86140 5.05459 5.11795 5.17106 5.23094 5.33490 5.37485 5.45347 5.49194 5.53115 5.62006 5.67818 5.74143 5.81900 5.90664 5.94281 6.03031 6.24079 6.33477 6.45488 6.78089 6.90570 7.10935 7.34777 7.41810 7.50311 7.70042 7.85110 8.02913 8.21581 8.27815 9.20702 9.80892 10.43912 11.38090 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.004951 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.732158 B = 5654.418360 C = 7388.600157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 H 0.107 0.893 4 C 0.513 3.487 5 O -0.520 6.520 6 N -0.579 5.579 7 C 0.075 3.925 8 C 0.057 3.943 9 O -0.369 6.369 10 C 0.068 3.932 11 H 0.110 0.890 12 C 0.152 3.848 13 N -0.601 5.601 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.925 5.925 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.110 3.890 23 C 0.111 3.889 24 H 0.072 0.928 25 C -0.176 4.176 26 C 0.186 3.814 27 N -0.523 5.523 28 C 0.288 3.712 29 N -0.523 5.523 30 C 0.156 3.844 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.168 0.832 44 H 0.194 0.806 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.299 2.916 -8.546 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 H 0.125 0.875 4 C 0.301 3.699 5 O -0.397 6.397 6 N -0.311 5.311 7 C -0.048 4.048 8 C -0.020 4.020 9 O -0.286 6.286 10 C 0.009 3.991 11 H 0.128 0.872 12 C 0.027 3.973 13 N -0.329 5.329 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.573 5.573 18 Si 0.741 3.259 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.213 1.213 22 C -0.015 4.015 23 C 0.007 3.993 24 H 0.090 0.910 25 C -0.181 4.181 26 C 0.021 3.979 27 N -0.236 5.236 28 C 0.001 3.999 29 N -0.236 5.236 30 C -0.010 4.010 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.103 0.897 42 H 0.042 0.958 43 H 0.185 0.815 44 H 0.210 0.790 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.649 2.019 -9.138 18.234 hybrid contribution 0.991 0.365 0.375 1.121 sum -14.658 2.383 -8.763 17.243 Atomic orbital electron populations 1.21767 0.91251 1.03366 1.03176 1.20214 0.98068 1.00288 0.90186 0.87520 1.20308 0.78345 0.87261 0.84032 1.90628 1.46834 1.17274 1.84931 1.46563 1.65423 1.10502 1.08662 1.21764 0.99796 0.82132 1.01116 1.22229 1.01521 0.93620 0.84674 1.86877 1.78003 1.30158 1.33608 1.22948 0.96368 0.82747 0.97071 0.87189 1.21691 0.86402 0.94221 0.95017 1.44218 1.03313 1.34495 1.50875 1.18992 0.82151 1.12494 1.21487 0.90592 1.24769 0.98070 0.98020 0.99537 1.69932 1.31638 1.20583 1.35103 0.86210 0.84381 0.77254 0.78023 1.21530 1.21112 1.21265 1.22078 0.84868 0.92711 1.01891 1.21728 0.97738 0.93665 0.86152 0.91007 1.21147 1.01765 0.97299 0.97870 1.23094 0.92509 0.90715 0.91630 1.68479 1.11836 1.39261 1.04041 1.24969 0.90154 0.87556 0.97264 1.68426 1.22750 1.10571 1.21845 1.23116 0.89590 1.00143 0.88146 0.91615 0.91107 0.91099 0.91475 0.89941 0.87895 0.91959 0.93122 0.92636 0.93717 0.89737 0.95771 0.81477 0.78951 0.81696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.00 37.16 0.33 -0.73 16 2 C -0.06 -0.69 2.19 -92.92 -0.20 -0.89 16 3 H 0.11 0.93 5.82 -51.93 -0.30 0.63 16 4 C 0.51 7.67 6.27 -10.99 -0.07 7.60 16 5 O -0.52 -9.51 11.52 5.55 0.06 -9.44 16 6 N -0.58 -8.78 3.09 -168.82 -0.52 -9.30 16 7 C 0.08 0.87 5.53 -5.40 -0.03 0.84 16 8 C 0.06 0.77 6.72 36.63 0.25 1.02 16 9 O -0.37 -6.22 10.25 -34.44 -0.35 -6.57 16 10 C 0.07 1.26 3.81 -26.39 -0.10 1.16 16 11 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 12 C 0.15 3.63 5.03 -3.41 -0.02 3.61 16 13 N -0.60 -15.52 3.39 -171.44 -0.58 -16.10 16 14 C -0.22 -6.36 10.25 -15.06 -0.15 -6.51 16 15 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 16 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 17 N -0.92 -27.01 10.26 55.49 0.57 -26.44 16 18 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.11 2.44 6.29 -3.23 -0.02 2.42 16 23 C 0.11 1.99 3.41 -68.50 -0.23 1.76 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 C -0.18 -2.16 4.62 -104.36 -0.48 -2.64 16 26 C 0.19 2.48 9.13 -17.21 -0.16 2.33 16 27 N -0.52 -7.27 10.44 -14.58 -0.15 -7.43 16 28 C 0.29 3.65 12.29 -92.15 -1.13 2.52 16 29 N -0.52 -6.99 10.44 -14.58 -0.15 -7.15 16 30 C 0.16 1.90 10.96 -17.20 -0.19 1.71 16 31 H 0.06 0.53 7.33 -51.93 -0.38 0.15 16 32 H 0.07 0.49 6.77 -51.93 -0.35 0.14 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.60 7.17 -51.93 -0.37 0.23 16 35 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.02 6.83 -51.93 -0.35 0.66 16 38 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 39 H 0.06 1.46 5.74 -51.93 -0.30 1.16 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.09 2.01 4.81 -52.37 -0.25 1.76 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.17 2.11 7.09 -52.49 -0.37 1.74 16 44 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.17 1.56 8.01 -52.49 -0.42 1.14 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -34.67 349.07 -9.07 -43.74 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.88 Total: 2.02 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -2.30 Total: 13.87 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.84 Total: -66.41 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.29 Total: -16.02 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.67 -9.07 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083173754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.312 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds