Wall clock time and date at job start Sat Apr 11 2020 03:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46560 * 2 1 4 4 C 1.50700 * 109.47070 * 119.99242 * 2 1 3 5 5 O 1.21287 * 119.99770 * 98.47213 * 4 2 1 6 6 N 1.34775 * 120.00265 * 278.47747 * 4 2 1 7 7 C 1.44954 * 117.33944 * 357.71921 * 6 4 2 8 8 C 1.51967 * 111.94857 * 203.76619 * 7 6 4 9 9 O 1.41326 * 111.61194 * 319.73369 * 8 7 6 10 10 C 1.40846 * 118.30006 * 56.87604 * 9 8 7 11 11 H 1.08998 * 109.53786 * 187.69533 * 10 9 8 12 12 C 1.53922 * 110.47007 * 68.13119 * 10 9 8 13 13 N 1.46780 * 107.61871 * 221.60505 * 12 10 9 14 14 C 1.36928 * 125.36117 * 178.71198 * 13 12 10 15 15 H 1.08004 * 120.00298 * 179.69353 * 14 13 12 16 16 C 1.38808 * 120.00237 * 359.69712 * 14 13 12 17 17 N 1.31621 * 120.00348 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00221 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47238 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46636 * 299.99682 * 18 16 14 21 21 H 1.48498 * 109.47063 * 59.99763 * 18 16 14 22 22 C 1.46867 * 109.27094 * 358.44994 * 13 12 10 23 23 C 1.44555 * 117.33777 * 177.72352 * 6 4 2 24 24 H 1.09002 * 109.32105 * 286.12318 * 23 6 4 25 25 C 1.50697 * 109.47308 * 239.99926 * 2 1 3 26 26 C 1.38592 * 120.79923 * 299.71854 * 25 2 1 27 27 N 1.32330 * 119.10492 * 179.72251 * 26 25 2 28 28 C 1.31798 * 120.81612 * 0.56496 * 27 26 25 29 29 N 1.31794 * 121.75470 * 359.70648 * 28 27 26 30 30 C 1.32334 * 120.81966 * 0.02562 * 29 28 27 31 31 H 1.09002 * 109.46403 * 174.94122 * 1 2 3 32 32 H 1.09001 * 109.47378 * 294.94142 * 1 2 3 33 33 H 1.08999 * 109.47218 * 54.94911 * 1 2 3 34 34 H 1.08996 * 108.98366 * 83.13070 * 7 6 4 35 35 H 1.08999 * 108.91954 * 324.35609 * 7 6 4 36 36 H 1.09000 * 109.04844 * 199.18932 * 8 7 6 37 37 H 1.08990 * 109.05246 * 80.28968 * 8 7 6 38 38 H 1.09001 * 109.94357 * 102.01660 * 12 10 9 39 39 H 1.08994 * 109.71147 * 341.06367 * 12 10 9 40 40 H 0.96996 * 120.00370 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.06819 * 137.28845 * 22 13 12 42 42 H 1.09003 * 110.07070 * 258.80843 * 22 13 12 43 43 H 1.07996 * 120.44775 * 359.97438 * 26 25 2 44 44 H 1.08009 * 119.12245 * 179.68507 * 28 27 26 45 45 H 1.08000 * 120.44954 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7102 1.2306 5 8 2.3804 -1.8701 1.1617 6 7 2.0948 -0.0567 2.4076 7 6 1.7126 1.3415 2.4138 8 6 2.3433 2.0976 3.5713 9 8 2.3413 1.3295 4.7576 10 6 2.9665 0.0676 4.7370 11 1 2.7646 -0.4545 5.6723 12 6 4.4898 0.2240 4.5815 13 7 4.9474 -0.8011 3.6359 14 6 6.2396 -0.9719 3.2164 15 1 6.4813 -1.7606 2.5192 16 6 7.2391 -0.1315 3.6872 17 7 6.9446 0.8299 4.5366 18 14 9.0019 -0.3641 3.1144 19 1 9.8703 0.6533 3.7593 20 1 9.4691 -1.7228 3.4900 21 1 9.0675 -0.2083 1.6391 22 6 3.8021 -1.6186 3.2154 23 6 2.5375 -0.8073 3.5610 24 1 1.7435 -1.4836 3.8777 25 6 2.0324 -0.7104 -1.2304 26 6 1.7126 -2.0387 -1.4632 27 7 2.1672 -2.6280 -2.5574 28 6 2.9238 -1.9709 -3.4135 29 7 3.2527 -0.7090 -3.2222 30 6 2.8306 -0.0529 -2.1533 31 1 -0.3632 -1.0237 -0.0906 32 1 -0.3634 0.4334 0.9318 33 1 -0.3633 0.5902 -0.8413 34 1 0.6278 1.4122 2.4931 35 1 2.0299 1.7988 1.4766 36 1 1.7841 3.0175 3.7422 37 1 3.3715 2.3506 3.3129 38 1 4.9784 0.0822 5.5455 39 1 4.7196 1.2155 4.1917 40 1 7.6429 1.4174 4.8653 41 1 3.8472 -1.8016 2.1418 42 1 3.7989 -2.5647 3.7567 43 1 1.0972 -2.5842 -0.7632 44 1 3.2842 -2.4802 -4.2952 45 1 3.1041 0.9809 -2.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083173754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:42 Heat of formation + Delta-G solvation = 5.201444 kcal Electronic energy + Delta-G solvation = -30261.719865 eV Core-core repulsion = 26280.521823 eV Total energy + Delta-G solvation = -3981.198042 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.53190 -41.77931 -39.87577 -37.70116 -36.22476 -35.83124 -34.67769 -34.23257 -31.70990 -31.16075 -29.56103 -29.00306 -26.73275 -26.15047 -25.49403 -24.73718 -24.14857 -22.43124 -21.14605 -19.92033 -19.21229 -18.78392 -18.58051 -18.25368 -17.82416 -17.06483 -16.91604 -16.55349 -16.18282 -15.84798 -15.70819 -15.48064 -15.28389 -15.08690 -14.64066 -14.55045 -14.33762 -14.22652 -13.86801 -13.78986 -13.27807 -13.14628 -13.02845 -12.89030 -12.79833 -12.53676 -12.42728 -12.19299 -12.09881 -11.89058 -11.82527 -11.72953 -11.60903 -10.85173 -10.76439 -10.52426 -10.28259 -10.12793 -9.53269 -8.91881 -7.91338 -5.27043 -0.13351 0.10851 1.38852 1.41280 1.48136 1.52846 1.84121 2.42260 2.74346 2.80615 3.19834 3.24715 3.26116 3.33207 3.48513 3.58930 3.65235 3.70895 3.74180 3.86826 3.96385 4.08655 4.18517 4.24815 4.35522 4.40893 4.46432 4.56245 4.59249 4.74072 4.78161 4.84943 4.90761 4.96892 5.05343 5.08107 5.27358 5.35679 5.41251 5.46436 5.61866 5.63849 5.94931 6.13443 6.25097 6.43824 7.04087 7.07099 7.12321 7.71114 8.32364 9.17214 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010497 B = 0.004951 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.732158 B = 5654.418360 C = 7388.600157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 H 0.133 0.867 4 C 0.506 3.494 5 O -0.561 6.561 6 N -0.585 5.585 7 C 0.070 3.930 8 C 0.048 3.952 9 O -0.372 6.372 10 C 0.085 3.915 11 H 0.124 0.876 12 C 0.163 3.837 13 N -0.618 5.618 14 C -0.244 4.244 15 H 0.067 0.933 16 C -0.056 4.056 17 N -0.945 5.945 18 Si 0.973 3.027 19 H -0.286 1.286 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.108 3.892 23 C 0.125 3.875 24 H 0.093 0.907 25 C -0.179 4.179 26 C 0.173 3.827 27 N -0.544 5.544 28 C 0.280 3.720 29 N -0.540 5.540 30 C 0.149 3.851 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.026 0.974 38 H 0.011 0.989 39 H 0.027 0.973 40 H 0.249 0.751 41 H 0.071 0.929 42 H 0.015 0.985 43 H 0.167 0.833 44 H 0.219 0.781 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.248 4.484 -9.535 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 H 0.151 0.849 4 C 0.296 3.704 5 O -0.441 6.441 6 N -0.318 5.318 7 C -0.052 4.052 8 C -0.028 4.028 9 O -0.289 6.289 10 C 0.026 3.974 11 H 0.141 0.859 12 C 0.038 3.962 13 N -0.345 5.345 14 C -0.373 4.373 15 H 0.085 0.915 16 C -0.249 4.249 17 N -0.593 5.593 18 Si 0.801 3.199 19 H -0.212 1.212 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.017 4.017 23 C 0.020 3.980 24 H 0.110 0.890 25 C -0.183 4.183 26 C 0.007 3.993 27 N -0.258 5.258 28 C -0.007 4.007 29 N -0.253 5.253 30 C -0.017 4.017 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.165 0.835 37 H 0.045 0.955 38 H 0.029 0.971 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.184 0.816 44 H 0.235 0.765 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.640 3.606 -10.136 20.661 hybrid contribution 1.620 -0.124 0.664 1.755 sum -16.020 3.482 -9.472 18.934 Atomic orbital electron populations 1.21798 0.88572 1.03591 1.05038 1.20275 1.00026 1.00410 0.86810 0.84928 1.21103 0.77371 0.87001 0.84938 1.90611 1.48616 1.19313 1.85522 1.46714 1.65201 1.11942 1.07908 1.22112 1.02102 0.79692 1.01266 1.22571 1.00584 0.95143 0.84523 1.86885 1.77029 1.29341 1.35618 1.22629 0.92398 0.84229 0.98168 0.85850 1.21447 0.90210 0.92318 0.92272 1.44443 1.03540 1.35342 1.51217 1.19227 0.83980 1.12496 1.21597 0.91484 1.25529 1.01711 0.97893 0.99805 1.70145 1.32355 1.21029 1.35803 0.85240 0.79775 0.77228 0.77616 1.21180 1.20608 1.20742 1.22141 0.85990 0.92798 1.00790 1.21409 0.96101 0.93566 0.86911 0.88961 1.21308 1.01590 0.96926 0.98509 1.23221 0.92842 0.91555 0.91641 1.68484 1.12690 1.39960 1.04693 1.25510 0.89750 0.87668 0.97818 1.68483 1.23280 1.10932 1.22607 1.23632 0.88961 1.01340 0.87737 0.92442 0.89466 0.88809 0.87209 0.87369 0.83484 0.95533 0.97115 0.95532 0.94172 0.91182 0.96733 0.81609 0.76461 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.00 71.98 0.65 -0.86 16 2 C -0.05 -0.96 2.19 -12.28 -0.03 -0.98 16 3 H 0.13 1.70 5.82 -2.39 -0.01 1.69 16 4 C 0.51 14.22 6.27 87.66 0.55 14.77 16 5 O -0.56 -20.46 11.52 -3.05 -0.04 -20.49 16 6 N -0.59 -16.39 3.09 -806.42 -2.49 -18.88 16 7 C 0.07 1.33 5.53 86.33 0.48 1.81 16 8 C 0.05 1.18 6.72 71.64 0.48 1.66 16 9 O -0.37 -11.82 10.25 -146.16 -1.50 -13.31 16 10 C 0.09 3.13 3.81 30.81 0.12 3.24 16 11 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 12 C 0.16 8.07 5.03 86.64 0.44 8.50 16 13 N -0.62 -33.00 3.39 -696.30 -2.36 -35.36 16 14 C -0.24 -14.39 10.25 84.03 0.86 -13.53 16 15 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 16 C -0.06 -3.25 5.48 84.86 0.47 -2.79 16 17 N -0.94 -56.93 10.26 21.65 0.22 -56.71 16 18 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 22 C 0.11 4.89 6.29 86.70 0.55 5.43 16 23 C 0.13 4.35 3.41 45.66 0.16 4.51 16 24 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 25 C -0.18 -4.07 4.62 -19.69 -0.09 -4.16 16 26 C 0.17 4.52 9.13 84.70 0.77 5.30 16 27 N -0.54 -15.04 10.44 -200.05 -2.09 -17.13 16 28 C 0.28 6.89 12.29 180.88 2.22 9.12 16 29 N -0.54 -13.78 10.44 -200.03 -2.09 -15.87 16 30 C 0.15 3.33 10.96 84.70 0.93 4.26 16 31 H 0.06 0.78 7.33 -2.39 -0.02 0.76 16 32 H 0.09 0.74 6.77 -2.39 -0.02 0.72 16 33 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.11 1.28 7.17 -2.39 -0.02 1.26 16 35 H 0.11 1.52 5.83 -2.39 -0.01 1.51 16 36 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.03 0.84 6.83 -2.39 -0.02 0.83 16 38 H 0.01 0.60 7.50 -2.39 -0.02 0.58 16 39 H 0.03 1.46 5.74 -2.39 -0.01 1.44 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.07 3.43 4.81 -9.39 -0.05 3.39 16 42 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.17 4.23 7.09 -2.91 -0.02 4.21 16 44 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.19 3.04 8.01 -2.91 -0.02 3.02 16 Total: -1.00 -80.01 349.07 1.23 -78.78 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.99 Total: 13.45 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 8.54 Total: 36.29 kcal Atomic # 7 Polarization: -135.14 SS G_CDS: -8.80 Total: -143.94 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.53 Total: -33.81 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -80.01 1.23 -78.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083173754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.986 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds