Wall clock time and date at job start Sat Apr 11 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47037 * 2 1 4 4 C 1.53003 * 109.46695 * 240.00433 * 2 1 3 5 5 N 1.46502 * 109.46802 * 184.99577 * 4 2 1 6 6 C 1.36942 * 119.99762 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99907 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00140 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99980 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46969 * 90.00119 * 10 8 6 12 12 H 1.48491 * 109.46991 * 210.00063 * 10 8 6 13 13 H 1.48504 * 109.46991 * 330.00326 * 10 8 6 14 14 N 1.46499 * 109.47630 * 120.00594 * 2 1 3 15 15 C 1.46497 * 120.00065 * 59.99807 * 14 2 1 16 16 C 1.34770 * 119.99879 * 240.00272 * 14 2 1 17 17 O 1.21580 * 120.00135 * 4.88019 * 16 14 2 18 18 C 1.47669 * 120.00215 * 184.88240 * 16 14 2 19 19 C 1.40072 * 119.91775 * 140.40467 * 18 16 14 20 20 C 1.36520 * 120.44122 * 180.02562 * 19 18 16 21 21 C 1.38960 * 120.15734 * 0.02562 * 20 19 18 22 22 C 1.40660 * 120.16684 * 359.97438 * 21 20 19 23 23 C 1.39210 * 119.91488 * 320.41313 * 18 16 14 24 24 N 1.35984 * 107.04740 * 180.02562 * 22 21 20 25 25 C 1.30721 * 109.54185 * 0.02562 * 24 22 21 26 26 O 1.35265 * 125.01903 * 179.97438 * 25 24 22 27 27 N 1.36445 * 109.96040 * 0.25942 * 25 24 22 28 28 C 1.46498 * 126.31847 * 179.73587 * 27 25 24 29 29 H 1.09004 * 109.46680 * 299.98907 * 1 2 3 30 30 H 1.08994 * 109.47670 * 59.99346 * 1 2 3 31 31 H 1.09008 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47190 * 304.99611 * 4 2 1 33 33 H 1.09003 * 109.46915 * 64.99995 * 4 2 1 34 34 H 0.96997 * 119.99874 * 359.97438 * 5 4 2 35 35 H 0.96991 * 120.00022 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.47100 * 265.86004 * 15 14 2 37 37 H 1.08998 * 109.47078 * 25.85689 * 15 14 2 38 38 H 1.09000 * 109.47395 * 145.86109 * 15 14 2 39 39 H 1.07995 * 119.77959 * 0.02562 * 19 18 16 40 40 H 1.07993 * 119.92085 * 179.97438 * 20 19 18 41 41 H 1.08006 * 120.24277 * 0.02562 * 23 18 16 42 42 H 0.96708 * 114.00174 * 90.02214 * 26 25 24 43 43 H 1.09003 * 109.47327 * 90.01983 * 28 27 25 44 44 H 1.08999 * 109.47310 * 210.02619 * 28 27 25 45 45 H 1.09003 * 109.46823 * 330.02513 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1908 6 6 4.1838 -1.4377 -2.2075 7 1 3.6467 -1.8429 -3.0524 8 6 5.5672 -1.5378 -2.1518 9 7 6.2244 -2.1259 -3.1288 10 14 6.4961 -0.8376 -0.6901 11 1 6.6268 -1.8805 0.3590 12 1 7.8471 -0.4012 -1.1252 13 1 5.7528 0.3254 -0.1421 14 7 2.0185 -0.6907 1.1961 15 6 1.6646 -2.0933 1.4278 16 6 2.7933 -0.0358 2.0832 17 8 3.0139 1.1510 1.9379 18 6 3.3743 -0.7595 3.2318 19 6 4.6837 -0.4803 3.6435 20 6 5.2316 -1.1434 4.7037 21 6 4.4926 -2.1035 5.3841 22 6 3.1763 -2.3966 4.9844 23 6 2.6193 -1.7176 3.9025 24 7 2.7105 -3.3608 5.8225 25 6 3.6369 -3.6698 6.6914 26 8 3.5056 -4.5934 7.6708 27 7 4.7539 -2.9184 6.4683 28 6 6.0014 -2.9697 7.2347 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 1.7515 -0.1581 -2.1370 34 1 3.9824 -0.4620 -0.4321 35 1 7.1910 -2.1955 -3.0900 36 1 0.7789 -2.1447 2.0611 37 1 1.4578 -2.5782 0.4738 38 1 2.4938 -2.6005 1.9210 39 1 5.2637 0.2644 3.1188 40 1 6.2421 -0.9217 5.0137 41 1 1.6097 -1.9343 3.5857 42 1 3.7727 -5.4852 7.4089 43 1 6.6710 -3.7059 6.7899 44 1 6.4776 -1.9894 7.2197 45 1 5.7836 -3.2522 8.2647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568320310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:45 Heat of formation + Delta-G solvation = 41.327358 kcal Electronic energy + Delta-G solvation = -29052.256045 eV Core-core repulsion = 25072.624541 eV Total energy + Delta-G solvation = -3979.631505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.48891 -40.13317 -38.31764 -36.83860 -36.23135 -34.64545 -34.16203 -32.29955 -30.83406 -30.07977 -29.25035 -27.48472 -26.83453 -25.91284 -24.00414 -23.11249 -22.11868 -21.20836 -21.00009 -19.26212 -18.92299 -17.90327 -17.53512 -17.22697 -16.88000 -16.43766 -15.59041 -15.29549 -15.01135 -14.68006 -14.59697 -14.24005 -14.11874 -13.69871 -13.56864 -13.23981 -12.98550 -12.94281 -12.81235 -12.61396 -12.51542 -12.36217 -12.19690 -11.98072 -11.75128 -11.57373 -11.39810 -10.92509 -10.77858 -10.69239 -10.53562 -10.27596 -10.10076 -9.67443 -9.57156 -8.87303 -8.56885 -8.37612 -8.33590 -7.19451 -5.74703 -3.09014 0.62296 0.95258 1.88398 2.31048 2.86219 3.12010 3.33834 3.39368 3.46551 3.48627 3.70927 4.07193 4.27143 4.54557 4.62931 4.68006 4.70752 4.95455 4.99806 5.07363 5.13159 5.18893 5.32941 5.34457 5.37615 5.50875 5.57421 5.61091 5.78635 5.85179 5.87924 6.00791 6.02078 6.06643 6.14366 6.21861 6.25185 6.27406 6.43078 6.50441 6.64280 6.87864 7.12368 7.44146 7.57082 8.01637 8.34147 8.44772 9.24523 9.97532 10.17967 11.43729 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003999 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.265530 B = 7000.673280 C = 8209.426059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.102 0.898 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.241 4.241 7 H 0.090 0.910 8 C 0.007 3.993 9 N -0.935 5.935 10 Si 0.872 3.128 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.272 1.272 14 N -0.591 5.591 15 C 0.072 3.928 16 C 0.562 3.438 17 O -0.536 6.536 18 C -0.127 4.127 19 C -0.046 4.046 20 C -0.114 4.114 21 C 0.073 3.927 22 C 0.047 3.953 23 C -0.030 4.030 24 N -0.478 5.478 25 C 0.445 3.555 26 O -0.442 6.442 27 N -0.495 5.495 28 C 0.075 3.925 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.038 0.962 34 H 0.362 0.638 35 H 0.259 0.741 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.409 0.591 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -3.413 22.265 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.120 0.880 4 C 0.020 3.980 5 N -0.398 5.398 6 C -0.371 4.371 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.583 5.583 10 Si 0.702 3.298 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.198 1.198 14 N -0.323 5.323 15 C -0.071 4.071 16 C 0.350 3.650 17 O -0.413 6.413 18 C -0.132 4.132 19 C -0.066 4.066 20 C -0.135 4.135 21 C -0.036 4.036 22 C -0.070 4.070 23 C -0.050 4.050 24 N -0.208 5.208 25 C 0.142 3.858 26 O -0.244 6.244 27 N -0.198 5.198 28 C -0.067 4.067 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.267 0.733 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.293 -2.902 22.408 23.455 hybrid contribution 1.960 0.033 0.988 2.196 sum -4.333 -2.869 23.396 23.966 Atomic orbital electron populations 1.22044 0.94608 1.02337 1.02280 1.21509 0.93896 0.98483 0.84222 0.88003 1.21004 0.85717 0.97488 0.93841 1.42648 1.01286 1.71179 1.24647 1.19054 0.89879 1.28995 0.99147 0.89179 1.24613 0.96146 1.00614 0.97506 1.69694 1.07247 1.48769 1.32570 0.86682 0.79906 0.79511 0.83674 1.20983 1.21663 1.19784 1.47663 1.49904 1.12430 1.22344 1.22106 1.00184 0.81806 1.03013 1.18134 0.78241 0.86590 0.82021 1.90779 1.60339 1.14791 1.75438 1.19655 0.95830 0.99275 0.98450 1.20685 0.93665 0.97656 0.94629 1.19563 0.99982 0.96787 0.97131 1.18784 0.97317 0.96985 0.90476 1.18556 0.91566 0.98632 0.98264 1.20749 1.00361 0.92108 0.91802 1.70692 1.27652 1.16880 1.05548 1.20330 0.82727 0.92172 0.90543 1.84793 1.86678 1.20647 1.32236 1.45535 1.13918 1.33961 1.26367 1.22020 0.83708 1.04471 0.96467 0.92478 0.91182 0.92166 0.95160 0.94378 0.80462 0.93145 0.92589 0.89904 0.90659 0.84122 0.85202 0.83526 0.73257 0.90470 0.89369 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.19 37.16 0.34 -1.54 16 2 C 0.12 1.99 2.79 -67.93 -0.19 1.80 16 3 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 4 C 0.15 2.84 5.52 -4.04 -0.02 2.82 16 5 N -0.75 -18.41 5.24 -59.91 -0.31 -18.72 16 6 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 9 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 10 Si 0.87 22.83 27.74 -169.99 -4.71 18.11 16 11 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.27 -7.02 6.52 56.52 0.37 -6.65 16 14 N -0.59 -9.55 2.24 -175.11 -0.39 -9.95 16 15 C 0.07 0.95 7.91 59.85 0.47 1.43 16 16 C 0.56 10.00 7.04 -12.41 -0.09 9.91 16 17 O -0.54 -11.12 16.25 5.30 0.09 -11.03 16 18 C -0.13 -1.98 5.23 -105.00 -0.55 -2.52 16 19 C -0.05 -0.68 9.55 -39.51 -0.38 -1.06 16 20 C -0.11 -1.40 9.97 -39.93 -0.40 -1.80 16 21 C 0.07 0.93 6.87 -83.84 -0.58 0.35 16 22 C 0.05 0.66 7.21 -84.70 -0.61 0.05 16 23 C -0.03 -0.42 7.60 -38.81 -0.29 -0.71 16 24 N -0.48 -6.55 11.31 -12.26 -0.14 -6.69 16 25 C 0.45 4.88 8.98 -88.90 -0.80 4.08 16 26 O -0.44 -3.33 13.51 -17.49 -0.24 -3.57 16 27 N -0.50 -4.99 3.22 -123.30 -0.40 -5.39 16 28 C 0.08 0.42 11.10 59.85 0.66 1.08 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.66 7.67 -51.92 -0.40 0.26 16 32 H 0.03 0.57 6.86 -51.93 -0.36 0.21 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.36 9.08 4.93 -40.82 -0.20 8.88 16 35 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 36 H 0.06 0.58 6.91 -51.93 -0.36 0.23 16 37 H 0.08 1.12 6.53 -51.93 -0.34 0.78 16 38 H 0.07 1.04 5.80 -51.93 -0.30 0.74 16 39 H 0.14 2.10 8.05 -52.49 -0.42 1.68 16 40 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.15 1.78 5.33 -52.48 -0.28 1.50 16 42 H 0.41 0.92 9.06 45.56 0.41 1.34 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -38.34 370.45 -7.58 -45.92 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.15 Total: 7.77 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.68 Total: 6.92 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -0.47 Total: -69.70 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.15 Total: -14.60 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.71 Total: 18.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.34 -7.58 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568320310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.247 kcal (2) G-P(sol) polarization free energy of solvation -38.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds