Wall clock time and date at job start Sat Apr 11 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47037 * 2 1 4 4 C 1.53003 * 109.46695 * 240.00433 * 2 1 3 5 5 N 1.46502 * 109.46802 * 184.99577 * 4 2 1 6 6 C 1.36942 * 119.99762 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00149 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99907 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00140 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99980 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46969 * 90.00119 * 10 8 6 12 12 H 1.48491 * 109.46991 * 210.00063 * 10 8 6 13 13 H 1.48504 * 109.46991 * 330.00326 * 10 8 6 14 14 N 1.46499 * 109.47630 * 120.00594 * 2 1 3 15 15 C 1.46497 * 120.00065 * 59.99807 * 14 2 1 16 16 C 1.34770 * 119.99879 * 240.00272 * 14 2 1 17 17 O 1.21580 * 120.00135 * 4.88019 * 16 14 2 18 18 C 1.47669 * 120.00215 * 184.88240 * 16 14 2 19 19 C 1.40072 * 119.91775 * 140.40467 * 18 16 14 20 20 C 1.36520 * 120.44122 * 180.02562 * 19 18 16 21 21 C 1.38960 * 120.15734 * 0.02562 * 20 19 18 22 22 C 1.40660 * 120.16684 * 359.97438 * 21 20 19 23 23 C 1.39210 * 119.91488 * 320.41313 * 18 16 14 24 24 N 1.35984 * 107.04740 * 180.02562 * 22 21 20 25 25 C 1.30721 * 109.54185 * 0.02562 * 24 22 21 26 26 O 1.35265 * 125.01903 * 179.97438 * 25 24 22 27 27 N 1.36445 * 109.96040 * 0.25942 * 25 24 22 28 28 C 1.46498 * 126.31847 * 179.73587 * 27 25 24 29 29 H 1.09004 * 109.46680 * 299.98907 * 1 2 3 30 30 H 1.08994 * 109.47670 * 59.99346 * 1 2 3 31 31 H 1.09008 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47190 * 304.99611 * 4 2 1 33 33 H 1.09003 * 109.46915 * 64.99995 * 4 2 1 34 34 H 0.96997 * 119.99874 * 359.97438 * 5 4 2 35 35 H 0.96991 * 120.00022 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.47100 * 265.86004 * 15 14 2 37 37 H 1.08998 * 109.47078 * 25.85689 * 15 14 2 38 38 H 1.09000 * 109.47395 * 145.86109 * 15 14 2 39 39 H 1.07995 * 119.77959 * 0.02562 * 19 18 16 40 40 H 1.07993 * 119.92085 * 179.97438 * 20 19 18 41 41 H 1.08006 * 120.24277 * 0.02562 * 23 18 16 42 42 H 0.96708 * 114.00174 * 90.02214 * 26 25 24 43 43 H 1.09003 * 109.47327 * 90.01983 * 28 27 25 44 44 H 1.08999 * 109.47310 * 210.02619 * 28 27 25 45 45 H 1.09003 * 109.46823 * 330.02513 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1908 6 6 4.1838 -1.4377 -2.2075 7 1 3.6467 -1.8429 -3.0524 8 6 5.5672 -1.5378 -2.1518 9 7 6.2244 -2.1259 -3.1288 10 14 6.4961 -0.8376 -0.6901 11 1 6.6268 -1.8805 0.3590 12 1 7.8471 -0.4012 -1.1252 13 1 5.7528 0.3254 -0.1421 14 7 2.0185 -0.6907 1.1961 15 6 1.6646 -2.0933 1.4278 16 6 2.7933 -0.0358 2.0832 17 8 3.0139 1.1510 1.9379 18 6 3.3743 -0.7595 3.2318 19 6 4.6837 -0.4803 3.6435 20 6 5.2316 -1.1434 4.7037 21 6 4.4926 -2.1035 5.3841 22 6 3.1763 -2.3966 4.9844 23 6 2.6193 -1.7176 3.9025 24 7 2.7105 -3.3608 5.8225 25 6 3.6369 -3.6698 6.6914 26 8 3.5056 -4.5934 7.6708 27 7 4.7539 -2.9184 6.4683 28 6 6.0014 -2.9697 7.2347 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 1.7515 -0.1581 -2.1370 34 1 3.9824 -0.4620 -0.4321 35 1 7.1910 -2.1955 -3.0900 36 1 0.7789 -2.1447 2.0611 37 1 1.4578 -2.5782 0.4738 38 1 2.4938 -2.6005 1.9210 39 1 5.2637 0.2644 3.1188 40 1 6.2421 -0.9217 5.0137 41 1 1.6097 -1.9343 3.5857 42 1 3.7727 -5.4852 7.4089 43 1 6.6710 -3.7059 6.7899 44 1 6.4776 -1.9894 7.2197 45 1 5.7836 -3.2522 8.2647 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568320310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:45 Heat of formation + Delta-G solvation = 11.114800 kcal Electronic energy + Delta-G solvation = -29053.566160 eV Core-core repulsion = 25072.624541 eV Total energy + Delta-G solvation = -3980.941620 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.35961 -41.37782 -39.14716 -38.05772 -37.33787 -35.99665 -35.41576 -33.88163 -32.57466 -31.19643 -30.22805 -28.17996 -27.90651 -27.59855 -25.07702 -24.16315 -23.88780 -22.33370 -21.98851 -20.61533 -19.65306 -19.53945 -18.95062 -18.07116 -17.95639 -17.49378 -16.76923 -16.65668 -16.41097 -16.01135 -15.64916 -15.48001 -15.24023 -14.98574 -14.75579 -14.32153 -14.29359 -14.05209 -13.96034 -13.75424 -13.60844 -13.53514 -13.45204 -13.26058 -12.94968 -12.86328 -12.53081 -12.40742 -12.35790 -12.24042 -11.87656 -11.78419 -11.51817 -11.22162 -11.03678 -10.93858 -9.72534 -9.45989 -9.31093 -9.27718 -8.05991 -5.37022 -0.31294 -0.07135 1.14112 1.29579 1.32827 1.40793 1.43848 1.62891 1.95522 2.43066 2.55296 2.66219 3.20468 3.25913 3.43189 3.64397 3.72385 3.80370 3.98679 4.08387 4.12784 4.23896 4.25377 4.31992 4.35868 4.38947 4.45724 4.64238 4.66052 4.78108 4.85215 4.87313 4.92071 4.99733 5.11457 5.13226 5.16475 5.23974 5.33213 5.50229 5.59112 5.62698 5.74066 6.18675 6.31223 6.52009 6.57111 7.04228 7.04679 7.82223 7.99834 9.15566 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003999 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.265530 B = 7000.673280 C = 8209.426059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.127 3.873 3 H 0.078 0.922 4 C 0.143 3.857 5 N -0.757 5.757 6 C -0.226 4.226 7 H 0.066 0.934 8 C -0.054 4.054 9 N -0.979 5.979 10 Si 0.936 3.064 11 H -0.271 1.271 12 H -0.291 1.291 13 H -0.272 1.272 14 N -0.592 5.592 15 C 0.069 3.931 16 C 0.555 3.445 17 O -0.578 6.578 18 C -0.145 4.145 19 C -0.072 4.072 20 C -0.100 4.100 21 C 0.066 3.934 22 C 0.031 3.969 23 C -0.027 4.027 24 N -0.514 5.514 25 C 0.459 3.541 26 O -0.438 6.438 27 N -0.489 5.489 28 C 0.066 3.934 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.258 0.742 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.434 0.566 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -4.483 25.141 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.096 0.904 4 C 0.017 3.983 5 N -0.402 5.402 6 C -0.357 4.357 7 H 0.084 0.916 8 C -0.246 4.246 9 N -0.630 5.630 10 Si 0.764 3.236 11 H -0.197 1.197 12 H -0.217 1.217 13 H -0.198 1.198 14 N -0.323 5.323 15 C -0.073 4.073 16 C 0.345 3.655 17 O -0.459 6.459 18 C -0.151 4.151 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.044 4.044 22 C -0.087 4.087 23 C -0.046 4.046 24 N -0.245 5.245 25 C 0.155 3.845 26 O -0.243 6.243 27 N -0.190 5.190 28 C -0.074 4.074 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.192 0.808 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.178 0.822 41 H 0.176 0.824 42 H 0.297 0.703 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.682 -4.024 25.321 26.495 hybrid contribution 2.006 0.235 0.182 2.028 sum -4.676 -3.789 25.502 26.203 Atomic orbital electron populations 1.21973 0.90923 1.03870 1.03355 1.21414 0.96574 0.96641 0.83029 0.90421 1.21242 0.82801 0.98632 0.95661 1.42722 1.03435 1.70640 1.23414 1.19081 0.90053 1.27569 0.99037 0.91575 1.25289 0.97207 1.01914 1.00229 1.69841 1.07423 1.50957 1.34740 0.85673 0.78280 0.78946 0.80681 1.19705 1.21723 1.19800 1.47799 1.49343 1.13415 1.21721 1.22285 1.01365 0.80039 1.03580 1.18550 0.77916 0.86306 0.82723 1.90739 1.61898 1.16553 1.76717 1.19543 0.96574 1.00415 0.98536 1.20724 0.93762 0.98707 0.96109 1.19745 1.01008 0.95560 0.95729 1.18897 0.96962 0.97270 0.91292 1.18750 0.92466 0.98953 0.98523 1.20747 1.00621 0.91557 0.91710 1.70653 1.29185 1.17808 1.06882 1.20451 0.82375 0.91973 0.89700 1.84771 1.86737 1.21744 1.31080 1.45770 1.14959 1.32688 1.25608 1.22407 0.82137 1.05857 0.97013 0.91696 0.89856 0.90356 0.93715 0.94134 0.80772 0.93328 0.89176 0.89984 0.91254 0.85205 0.82198 0.82419 0.70318 0.88740 0.88257 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.19 71.98 0.66 -2.51 16 2 C 0.13 4.05 2.79 44.99 0.13 4.17 16 3 H 0.08 2.89 6.91 -2.39 -0.02 2.87 16 4 C 0.14 5.44 5.52 86.38 0.48 5.91 16 5 N -0.76 -37.15 5.24 -343.45 -1.80 -38.95 16 6 C -0.23 -13.20 10.47 84.03 0.88 -12.31 16 7 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 8 C -0.05 -3.31 5.50 84.86 0.47 -2.84 16 9 N -0.98 -63.47 13.97 21.65 0.30 -63.17 16 10 Si 0.94 48.10 27.74 68.60 1.90 50.00 16 11 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 13 H -0.27 -13.85 6.52 99.48 0.65 -13.20 16 14 N -0.59 -18.75 2.24 -826.20 -1.85 -20.61 16 15 C 0.07 1.73 7.91 127.77 1.01 2.74 16 16 C 0.56 19.96 7.04 86.74 0.61 20.57 16 17 O -0.58 -24.73 16.25 -3.97 -0.06 -24.79 16 18 C -0.15 -4.53 5.23 -20.11 -0.11 -4.64 16 19 C -0.07 -2.13 9.55 22.31 0.21 -1.91 16 20 C -0.10 -2.30 9.97 22.04 0.22 -2.08 16 21 C 0.07 1.55 6.87 38.92 0.27 1.82 16 22 C 0.03 0.82 7.21 39.36 0.28 1.11 16 23 C -0.03 -0.72 7.60 22.77 0.17 -0.54 16 24 N -0.51 -13.22 11.31 -306.55 -3.47 -16.69 16 25 C 0.46 8.83 8.98 179.75 1.61 10.45 16 26 O -0.44 -5.15 13.51 -85.49 -1.16 -6.31 16 27 N -0.49 -8.41 3.22 -654.89 -2.11 -10.52 16 28 C 0.07 0.48 11.10 127.77 1.42 1.90 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.47 7.67 -2.38 -0.02 1.45 16 32 H 0.04 1.60 6.86 -2.39 -0.02 1.59 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.36 18.09 4.93 -92.71 -0.46 17.63 16 35 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 36 H 0.09 1.65 6.91 -2.38 -0.02 1.63 16 37 H 0.08 2.06 6.53 -2.39 -0.02 2.05 16 38 H 0.07 1.86 5.80 -2.39 -0.01 1.84 16 39 H 0.13 3.98 8.05 -2.91 -0.02 3.96 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.16 3.65 5.33 -2.91 -0.02 3.64 16 42 H 0.43 0.38 9.06 -74.05 -0.67 -0.29 16 43 H 0.09 0.41 8.14 -2.39 -0.02 0.40 16 44 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.11 0.42 8.12 -2.39 -0.02 0.40 16 Total: -1.00 -85.10 370.45 -0.06 -85.16 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.14 Total: 24.04 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 8.32 Total: 21.84 kcal Atomic # 7 Polarization: -141.01 SS G_CDS: -8.93 Total: -149.93 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.22 Total: -31.10 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.90 Total: 50.00 kcal Total: -85.10 -0.06 -85.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568320310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.275 kcal (2) G-P(sol) polarization free energy of solvation -85.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds