Wall clock time and date at job start Sat Apr 11 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99991 * 2 1 4 4 H 1.08998 * 109.47027 * 330.00540 * 3 2 1 5 5 C 1.52998 * 109.46940 * 90.00339 * 3 2 1 6 6 C 1.53004 * 109.47108 * 210.00280 * 3 2 1 7 7 N 1.46898 * 109.46930 * 65.00272 * 6 3 2 8 8 C 1.47961 * 110.99459 * 189.99746 * 7 6 3 9 9 C 1.53944 * 86.17800 * 137.58152 * 8 7 6 10 10 C 1.52997 * 113.73233 * 221.81307 * 9 8 7 11 11 C 1.53006 * 109.46816 * 172.25982 * 10 9 8 12 12 O 1.42901 * 109.46780 * 179.97438 * 11 10 9 13 13 N 1.46500 * 113.72988 * 90.63558 * 9 8 7 14 14 C 1.34780 * 120.00016 * 67.08465 * 13 9 8 15 15 O 1.21283 * 120.00130 * 354.93433 * 14 13 9 16 16 C 1.50695 * 119.99898 * 174.93230 * 14 13 9 17 17 S 1.81001 * 109.46974 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00097 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00112 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00267 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99754 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00392 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47125 * 59.98848 * 22 20 18 24 24 H 1.48493 * 109.47548 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.46795 * 299.99591 * 22 20 18 26 26 C 1.48295 * 111.00412 * 289.34958 * 7 6 3 27 27 H 1.08995 * 109.47357 * 59.99361 * 1 2 3 28 28 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46944 * 299.99533 * 1 2 3 30 30 H 1.09001 * 109.47324 * 59.99775 * 5 3 2 31 31 H 1.09000 * 109.47562 * 179.97438 * 5 3 2 32 32 H 1.09004 * 109.47259 * 299.99862 * 5 3 2 33 33 H 1.08995 * 109.46935 * 305.00090 * 6 3 2 34 34 H 1.09000 * 109.46971 * 185.00296 * 6 3 2 35 35 H 1.08999 * 113.76528 * 23.26893 * 8 7 6 36 36 H 1.09004 * 113.86078 * 251.90875 * 8 7 6 37 37 H 1.08996 * 109.47239 * 292.25765 * 10 9 8 38 38 H 1.08998 * 109.46912 * 52.26292 * 10 9 8 39 39 H 1.09001 * 109.47141 * 299.96484 * 11 10 9 40 40 H 1.08996 * 109.47197 * 59.96423 * 11 10 9 41 41 H 0.96706 * 113.99395 * 179.97438 * 12 11 10 42 42 H 0.96998 * 120.00380 * 247.07861 * 13 9 8 43 43 H 1.09003 * 109.47614 * 299.99854 * 16 14 13 44 44 H 1.08997 * 109.47380 * 59.99912 * 16 14 13 45 45 H 0.96999 * 120.00008 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.86107 * 108.14501 * 26 7 6 47 47 H 1.08999 * 113.76046 * 336.68273 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7213 7 7 3.1470 0.9323 -2.1368 8 6 4.4320 0.6481 -2.8129 9 6 3.6986 -0.5242 -3.4895 10 6 4.5273 -1.8081 -3.5643 11 6 3.6488 -2.9532 -4.0724 12 8 4.4230 -4.1522 -4.1428 13 7 3.0760 -0.1711 -4.7677 14 6 3.8459 0.1487 -5.8268 15 8 5.0489 0.2339 -5.6983 16 6 3.2120 0.4004 -7.1705 17 16 4.4983 0.8035 -8.3784 18 6 3.5055 1.0432 -9.8142 19 1 2.4334 0.9272 -9.7550 20 6 4.1014 1.3800 -11.0217 21 7 5.4082 1.5209 -11.0941 22 14 3.0490 1.6334 -12.5441 23 1 2.0835 2.7351 -12.3006 24 1 3.9194 1.9838 -13.6950 25 1 2.3071 0.3830 -12.8467 26 6 2.7284 -0.4816 -2.2951 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.8830 1.0773 1.9563 31 1 2.6615 2.7669 1.4426 32 1 1.2569 1.8014 1.9564 33 1 3.9931 0.5052 -0.2619 34 1 3.8427 2.2370 -0.6444 35 1 5.2259 0.3362 -2.1342 36 1 4.7473 1.4277 -3.5063 37 1 5.3639 -1.6613 -4.2474 38 1 4.9068 -2.0539 -2.5725 39 1 2.8126 -3.1004 -3.3890 40 1 3.2688 -2.7071 -5.0639 41 1 3.9288 -4.9215 -4.4577 42 1 2.1097 -0.1675 -4.8520 43 1 2.6780 -0.4933 -7.4936 44 1 2.5129 1.2330 -7.0923 45 1 5.8246 1.7566 -11.9378 46 1 1.6819 -0.6029 -2.5748 47 1 3.0251 -1.1230 -1.4653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570756921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:38 Heat of formation + Delta-G solvation = -98.627015 kcal Electronic energy + Delta-G solvation = -27125.904543 eV Core-core repulsion = 23243.355362 eV Total energy + Delta-G solvation = -3882.549182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00933 -38.86049 -37.91209 -36.86332 -34.23690 -32.53502 -32.40529 -31.33676 -28.99920 -27.97782 -26.96262 -26.34757 -25.46546 -24.29584 -22.15965 -21.26104 -20.80270 -19.12996 -17.85380 -17.52009 -17.17456 -16.55073 -16.13819 -15.93823 -15.51840 -15.29890 -14.85708 -14.79214 -14.70596 -14.49116 -14.14274 -13.92394 -13.57988 -13.26142 -13.14813 -12.90071 -12.73707 -12.55428 -12.27897 -12.14810 -12.06357 -11.87094 -11.55557 -11.39419 -11.21130 -11.02654 -11.02534 -10.91299 -10.75071 -10.60353 -9.99526 -9.90306 -9.80183 -9.25458 -9.08127 -9.03567 -8.71876 -8.21067 -6.47014 -6.19581 -3.89702 3.01359 3.12378 3.24587 3.28221 3.31198 3.42032 3.64218 3.77608 4.00124 4.22488 4.27546 4.45589 4.68617 4.77904 4.92305 4.98494 5.01865 5.07720 5.10996 5.14706 5.15402 5.21767 5.25259 5.30515 5.34508 5.37744 5.41834 5.46914 5.57713 5.60162 5.62091 5.76621 5.78945 5.90319 5.91638 5.94243 6.12818 6.17064 6.24870 6.75111 6.82699 6.86089 7.57227 7.61070 7.77014 8.36886 8.67251 9.25575 10.87750 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002632 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.529907 B =10634.412020 C =11398.167892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.089 3.911 4 H 0.069 0.931 5 C -0.174 4.174 6 C 0.022 3.978 7 N -0.476 5.476 8 C 0.008 3.992 9 C 0.154 3.846 10 C -0.122 4.122 11 C 0.082 3.918 12 O -0.574 6.574 13 N -0.712 5.712 14 C 0.536 3.464 15 O -0.511 6.511 16 C -0.153 4.153 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.024 3.976 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.377 0.623 42 H 0.400 0.600 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.087 0.913 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 -4.927 24.425 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C 0.031 3.969 4 H 0.087 0.913 5 C -0.232 4.232 6 C -0.106 4.106 7 N -0.198 5.198 8 C -0.122 4.122 9 C 0.065 3.935 10 C -0.161 4.161 11 C 0.004 3.996 12 O -0.379 6.379 13 N -0.366 5.366 14 C 0.322 3.678 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.169 5.831 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.744 3.256 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.224 0.776 42 H 0.235 0.765 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.141 -3.960 24.517 26.134 hybrid contribution -2.758 -0.552 -0.894 2.952 sum -10.899 -4.512 23.623 26.404 Atomic orbital electron populations 1.22747 0.81210 1.02540 0.99925 1.87906 1.19567 1.27750 1.95007 1.22113 0.94840 0.85032 0.94935 0.91280 1.22254 1.02391 1.01780 0.96745 1.22786 0.95737 1.02226 0.89889 1.68651 1.18834 1.21106 1.11235 1.24285 0.91872 0.98500 0.97517 1.21579 0.94121 0.93439 0.84345 1.21764 0.99617 0.91799 1.02890 1.22054 0.93084 0.84786 0.99627 1.86480 1.41703 1.19763 1.89987 1.45625 1.09720 1.72066 1.09215 1.20259 0.87263 0.75351 0.84889 1.90690 1.14399 1.48908 1.84491 1.23529 1.05742 1.04617 0.96466 1.85389 1.07088 1.90384 1.00246 1.22830 0.95164 1.55095 0.95316 0.91043 1.24986 0.95288 0.94721 0.98580 1.70009 1.08876 1.44685 1.26734 0.86235 0.79681 0.78768 0.80875 1.19962 1.20827 1.19968 1.24256 0.99961 0.90534 0.95750 0.93845 0.89825 0.94382 0.91825 0.91441 0.92357 0.93218 0.89276 0.90594 0.87989 0.89102 0.90682 0.94084 0.93345 0.77615 0.76515 0.89406 0.89308 0.92150 0.89424 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.27 8.06 -35.23 -0.28 -3.56 16 3 C 0.09 0.71 2.92 -26.73 -0.08 0.63 16 4 H 0.07 0.58 7.79 -51.93 -0.40 0.17 16 5 C -0.17 -1.12 9.53 37.16 0.35 -0.76 16 6 C 0.02 0.20 4.67 -3.82 -0.02 0.18 16 7 N -0.48 -5.12 6.27 -237.79 -1.49 -6.62 16 8 C 0.01 0.09 6.86 -2.76 -0.02 0.08 16 9 C 0.15 1.84 0.61 -133.51 -0.08 1.76 16 10 C -0.12 -1.56 4.86 -26.73 -0.13 -1.69 16 11 C 0.08 0.96 6.82 37.16 0.25 1.21 16 12 O -0.57 -7.08 13.66 -35.23 -0.48 -7.56 16 13 N -0.71 -9.46 4.58 -48.69 -0.22 -9.68 16 14 C 0.54 9.76 7.41 -10.99 -0.08 9.68 16 15 O -0.51 -11.15 13.85 5.55 0.08 -11.08 16 16 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 17 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.02 0.23 5.21 -2.57 -0.01 0.22 16 27 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 33 H 0.05 0.44 7.69 -51.93 -0.40 0.04 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.85 7.75 -51.93 -0.40 0.45 16 36 H 0.10 1.56 7.42 -51.93 -0.39 1.18 16 37 H 0.09 1.50 7.06 -51.93 -0.37 1.13 16 38 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.04 0.38 7.98 -51.93 -0.41 -0.03 16 40 H 0.05 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.38 2.87 9.12 45.56 0.42 3.28 16 42 H 0.40 4.33 8.66 -40.82 -0.35 3.97 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 47 H 0.09 0.84 7.26 -51.93 -0.38 0.46 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -35.15 395.32 -8.49 -43.65 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.24 Total: 4.97 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 1.70 Total: -3.22 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.98 Total: -41.84 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.69 Total: -22.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.15 -8.49 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570756921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.982 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds