Wall clock time and date at job start Sat Apr 11 2020 03:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46574 * 2 1 4 4 C 1.52999 * 109.46878 * 240.00071 * 2 1 3 5 5 N 1.46504 * 109.46536 * 185.00032 * 4 2 1 6 6 C 1.46501 * 119.99755 * 269.99504 * 5 4 2 7 7 C 1.36932 * 120.00280 * 90.00330 * 5 4 2 8 8 H 1.08000 * 120.00014 * 22.32604 * 7 5 4 9 9 C 1.38811 * 120.00481 * 202.33409 * 7 5 4 10 10 N 1.31623 * 119.99512 * 11.36384 * 9 7 5 11 11 Si 1.86795 * 120.00491 * 191.37048 * 9 7 5 12 12 H 1.48504 * 109.47029 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47489 * 119.99839 * 11 9 7 14 14 H 1.48503 * 109.47033 * 239.99802 * 11 9 7 15 15 N 1.46498 * 109.46971 * 119.99736 * 2 1 3 16 16 C 1.34773 * 120.00361 * 274.99886 * 15 2 1 17 17 O 1.21633 * 120.00005 * 0.02562 * 16 15 2 18 18 C 1.47239 * 120.00083 * 179.72225 * 16 15 2 19 19 C 1.38018 * 126.81480 * 0.30740 * 18 16 15 20 20 N 1.34111 * 107.88687 * 179.97438 * 19 18 16 21 21 C 1.46494 * 125.15806 * 180.02562 * 20 19 18 22 22 N 1.39770 * 109.68063 * 359.97438 * 20 19 18 23 23 C 1.31364 * 109.09420 * 359.70317 * 22 20 19 24 24 C 1.48313 * 126.51899 * 180.26265 * 23 22 20 25 25 C 1.46741 * 127.11878 * 325.22048 * 24 23 22 26 26 C 1.34360 * 106.02415 * 179.97438 * 25 24 23 27 27 O 1.34162 * 109.00266 * 0.02562 * 26 25 24 28 28 C 1.34086 * 110.75267 * 359.72282 * 27 26 25 29 29 H 1.09000 * 109.47123 * 59.99987 * 1 2 3 30 30 H 1.08994 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47026 * 300.00245 * 1 2 3 32 32 H 1.08997 * 109.47099 * 304.99494 * 4 2 1 33 33 H 1.09001 * 109.47461 * 65.00303 * 4 2 1 34 34 H 1.09002 * 109.46631 * 94.23234 * 6 5 4 35 35 H 1.09007 * 109.47225 * 214.22718 * 6 5 4 36 36 H 1.08996 * 109.47272 * 334.22892 * 6 5 4 37 37 H 0.97001 * 119.99960 * 180.02562 * 10 9 7 38 38 H 0.97001 * 119.99609 * 95.00098 * 15 2 1 39 39 H 1.08000 * 126.06289 * 359.97438 * 19 18 16 40 40 H 1.08999 * 109.47178 * 90.00222 * 21 20 19 41 41 H 1.09008 * 109.47060 * 209.99964 * 21 20 19 42 42 H 1.09000 * 109.47496 * 329.99755 * 21 20 19 43 43 H 1.07996 * 126.98432 * 359.95490 * 25 24 23 44 44 H 1.08002 * 125.49763 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.77287 * 180.29150 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8398 -0.5085 9 6 5.3863 -1.8326 -0.1263 10 7 5.9795 -0.6612 -0.0337 11 14 6.2958 -3.3828 0.3825 12 1 5.4145 -4.5615 0.1838 13 1 7.5190 -3.5336 -0.4457 14 1 6.6765 -3.2858 1.8146 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8574 1.1618 2.4119 18 6 2.6321 -0.7138 3.5608 19 6 2.9983 -2.0410 3.6580 20 7 3.3797 -2.2714 4.9229 21 6 3.8441 -3.5600 5.4425 22 7 3.2680 -1.0954 5.6700 23 6 2.8293 -0.1322 4.8920 24 6 2.5766 1.2750 5.2865 25 6 2.0753 1.7560 6.5790 26 6 2.0072 3.0939 6.4758 27 8 2.4169 3.4590 5.2516 28 6 2.7668 2.3858 4.5279 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 4.6022 0.9456 -0.9801 35 1 5.2405 -0.2027 -2.1811 36 1 3.7811 0.7484 -2.5470 37 1 6.8889 -0.6030 0.2985 38 1 2.2490 -1.6317 1.1526 39 1 2.9808 -2.7656 2.8574 40 1 4.9255 -3.6305 5.3254 41 1 3.5871 -3.6398 6.4988 42 1 3.3653 -4.3685 4.8900 43 1 1.8139 1.1564 7.4384 44 1 1.6760 3.7668 7.2530 45 1 3.1353 2.4016 3.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669856445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:44 Heat of formation + Delta-G solvation = 83.189254 kcal Electronic energy + Delta-G solvation = -29535.747598 eV Core-core repulsion = 25557.931361 eV Total energy + Delta-G solvation = -3977.816237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.03907 -40.73333 -38.64353 -36.20544 -34.06308 -33.68949 -31.98735 -31.46271 -30.52814 -29.40900 -29.21013 -26.53305 -26.15582 -25.61426 -23.27223 -21.97654 -21.65661 -20.97550 -20.23196 -19.43237 -19.08224 -17.67061 -16.96163 -16.56068 -15.65124 -15.63756 -15.39286 -15.26819 -14.89804 -14.58765 -14.14558 -13.73612 -13.70323 -13.21940 -13.06089 -12.96383 -12.79083 -12.68166 -12.52170 -12.21245 -12.17684 -11.93136 -11.77375 -11.38965 -11.29083 -10.93143 -10.77438 -10.67104 -10.38536 -10.23792 -10.07366 -9.97177 -9.86712 -9.18880 -9.01244 -8.61899 -8.47635 -8.15273 -7.88745 -6.80011 -5.77787 -3.23429 1.79486 1.91091 2.29446 2.51659 3.22812 3.24007 3.31507 3.35767 3.40154 3.97714 4.16792 4.39567 4.51288 4.70203 4.98370 5.12041 5.13552 5.32947 5.36413 5.40904 5.49408 5.57940 5.65815 5.69372 5.76961 5.84780 5.99658 6.04426 6.18926 6.19420 6.29163 6.47249 6.51315 6.56236 6.60222 6.74314 6.76421 6.92972 7.01415 7.36703 7.39478 7.42957 7.66360 7.78741 7.81107 8.32761 8.43115 9.08441 9.16845 9.81382 10.32044 11.26366 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005033 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.139705 B = 5562.162711 C = 6903.439935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 H 0.078 0.922 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.256 4.256 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.890 3.110 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.685 5.685 16 C 0.599 3.401 17 O -0.565 6.565 18 C -0.271 4.271 19 C 0.109 3.891 20 N -0.370 5.370 21 C 0.099 3.901 22 N -0.294 5.294 23 C 0.202 3.798 24 C -0.138 4.138 25 C -0.188 4.188 26 C -0.057 4.057 27 O -0.183 6.183 28 C 0.056 3.944 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.043 0.957 36 H -0.004 1.004 37 H 0.251 0.749 38 H 0.399 0.601 39 H 0.184 0.816 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.199 0.801 45 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.200 -1.740 8.725 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.083 0.917 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.333 5.333 16 C 0.387 3.613 17 O -0.446 6.446 18 C -0.286 4.286 19 C -0.039 4.039 20 N -0.149 5.149 21 C -0.042 4.042 22 N -0.115 5.115 23 C 0.033 3.967 24 C -0.141 4.141 25 C -0.208 4.208 26 C -0.123 4.123 27 O -0.079 6.079 28 C -0.014 4.014 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.062 0.938 38 H 0.234 0.766 39 H 0.201 0.799 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.165 0.835 44 H 0.216 0.784 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.762 -1.095 9.900 12.627 hybrid contribution 0.669 -1.583 -0.339 1.752 sum -7.092 -2.678 9.560 12.202 Atomic orbital electron populations 1.22161 0.97015 1.01124 1.01545 1.21778 0.91670 0.98418 0.86803 0.90423 1.21188 0.85904 0.97833 0.93716 1.43873 0.98914 1.22624 1.66614 1.20790 0.92913 0.90475 0.93857 1.19067 0.97108 0.89388 1.32966 0.91698 1.24970 0.98648 0.95900 0.99526 1.70064 1.13245 1.21405 1.49216 0.86417 0.80438 0.83127 0.77977 1.20287 1.21560 1.21904 1.45522 1.65379 1.14009 1.08368 1.16972 0.76551 0.85881 0.81916 1.90616 1.53105 1.15586 1.85303 1.21339 1.18585 0.93239 0.95414 1.22998 0.95388 0.97467 0.88054 1.47995 1.50754 1.09210 1.06954 1.21926 1.00885 0.79941 1.01486 1.77269 1.24531 0.91034 1.18640 1.20760 0.94960 0.91234 0.89708 1.18825 1.10997 0.89253 0.95050 1.22709 1.05940 0.94342 0.97765 1.23723 1.05943 0.95753 0.86863 1.83930 1.64857 1.35897 1.23184 1.24725 0.97631 0.82418 0.96672 0.92394 0.93197 0.92830 0.93478 0.93019 0.95345 0.93801 0.98580 0.93814 0.76559 0.79876 0.90503 0.89227 0.89184 0.83489 0.78382 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.64 5.36 -4.04 -0.02 2.61 16 5 N -0.60 -13.73 2.82 -181.12 -0.51 -14.24 16 6 C 0.16 3.91 9.01 59.85 0.54 4.45 16 7 C -0.26 -6.20 8.02 -15.06 -0.12 -6.32 16 8 H 0.07 1.51 7.84 -52.49 -0.41 1.09 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.90 -24.81 10.59 55.49 0.59 -24.22 16 11 Si 0.89 20.04 29.57 -169.99 -5.03 15.02 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 N -0.68 -12.92 4.48 -54.94 -0.25 -13.17 16 16 C 0.60 12.13 7.77 -12.60 -0.10 12.03 16 17 O -0.56 -12.32 12.71 5.25 0.07 -12.25 16 18 C -0.27 -5.15 6.31 -102.95 -0.65 -5.80 16 19 C 0.11 1.78 10.94 -16.64 -0.18 1.60 16 20 N -0.37 -5.70 3.95 -67.65 -0.27 -5.96 16 21 C 0.10 1.01 11.39 59.84 0.68 1.69 16 22 N -0.29 -5.29 12.50 34.58 0.43 -4.86 16 23 C 0.20 3.85 7.34 -80.55 -0.59 3.26 16 24 C -0.14 -2.50 6.07 -103.18 -0.63 -3.12 16 25 C -0.19 -2.80 11.15 -37.52 -0.42 -3.22 16 26 C -0.06 -0.74 12.04 29.36 0.35 -0.39 16 27 O -0.18 -2.91 10.55 6.67 0.07 -2.84 16 28 C 0.06 1.00 10.28 29.88 0.31 1.31 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.82 8.03 -51.93 -0.42 0.41 16 33 H 0.05 0.88 7.86 -51.93 -0.41 0.48 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.12 7.19 -51.93 -0.37 0.75 16 36 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.40 7.27 6.35 -40.82 -0.26 7.01 16 39 H 0.18 2.49 7.48 -52.49 -0.39 2.10 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 42 H 0.09 0.66 8.13 -51.93 -0.42 0.24 16 43 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.22 4.17 6.37 -52.49 -0.33 3.83 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -32.48 378.89 -6.24 -38.72 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.30 Total: 9.90 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.76 Total: 8.20 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.00 Total: -62.45 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.14 Total: -15.09 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.48 -6.24 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669856445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.909 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds