Wall clock time and date at job start Sat Apr 11 2020 03:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.46574 * 2 1 4 4 C 1.52999 * 109.46878 * 240.00071 * 2 1 3 5 5 N 1.46504 * 109.46536 * 185.00032 * 4 2 1 6 6 C 1.46501 * 119.99755 * 269.99504 * 5 4 2 7 7 C 1.36932 * 120.00280 * 90.00330 * 5 4 2 8 8 H 1.08000 * 120.00014 * 22.32604 * 7 5 4 9 9 C 1.38811 * 120.00481 * 202.33409 * 7 5 4 10 10 N 1.31623 * 119.99512 * 11.36384 * 9 7 5 11 11 Si 1.86795 * 120.00491 * 191.37048 * 9 7 5 12 12 H 1.48504 * 109.47029 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47489 * 119.99839 * 11 9 7 14 14 H 1.48503 * 109.47033 * 239.99802 * 11 9 7 15 15 N 1.46498 * 109.46971 * 119.99736 * 2 1 3 16 16 C 1.34773 * 120.00361 * 274.99886 * 15 2 1 17 17 O 1.21633 * 120.00005 * 0.02562 * 16 15 2 18 18 C 1.47239 * 120.00083 * 179.72225 * 16 15 2 19 19 C 1.38018 * 126.81480 * 0.30740 * 18 16 15 20 20 N 1.34111 * 107.88687 * 179.97438 * 19 18 16 21 21 C 1.46494 * 125.15806 * 180.02562 * 20 19 18 22 22 N 1.39770 * 109.68063 * 359.97438 * 20 19 18 23 23 C 1.31364 * 109.09420 * 359.70317 * 22 20 19 24 24 C 1.48313 * 126.51899 * 180.26265 * 23 22 20 25 25 C 1.46741 * 127.11878 * 325.22048 * 24 23 22 26 26 C 1.34360 * 106.02415 * 179.97438 * 25 24 23 27 27 O 1.34162 * 109.00266 * 0.02562 * 26 25 24 28 28 C 1.34086 * 110.75267 * 359.72282 * 27 26 25 29 29 H 1.09000 * 109.47123 * 59.99987 * 1 2 3 30 30 H 1.08994 * 109.46833 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47026 * 300.00245 * 1 2 3 32 32 H 1.08997 * 109.47099 * 304.99494 * 4 2 1 33 33 H 1.09001 * 109.47461 * 65.00303 * 4 2 1 34 34 H 1.09002 * 109.46631 * 94.23234 * 6 5 4 35 35 H 1.09007 * 109.47225 * 214.22718 * 6 5 4 36 36 H 1.08996 * 109.47272 * 334.22892 * 6 5 4 37 37 H 0.97001 * 119.99960 * 180.02562 * 10 9 7 38 38 H 0.97001 * 119.99609 * 95.00098 * 15 2 1 39 39 H 1.08000 * 126.06289 * 359.97438 * 19 18 16 40 40 H 1.08999 * 109.47178 * 90.00222 * 21 20 19 41 41 H 1.09008 * 109.47060 * 209.99964 * 21 20 19 42 42 H 1.09000 * 109.47496 * 329.99755 * 21 20 19 43 43 H 1.07996 * 126.98432 * 359.95490 * 25 24 23 44 44 H 1.08002 * 125.49763 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.77287 * 180.29150 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1905 6 6 4.3343 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8398 -0.5085 9 6 5.3863 -1.8326 -0.1263 10 7 5.9795 -0.6612 -0.0337 11 14 6.2958 -3.3828 0.3825 12 1 5.4145 -4.5615 0.1838 13 1 7.5190 -3.5336 -0.4457 14 1 6.6765 -3.2858 1.8146 15 7 2.0184 -0.6905 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8574 1.1618 2.4119 18 6 2.6321 -0.7138 3.5608 19 6 2.9983 -2.0410 3.6580 20 7 3.3797 -2.2714 4.9229 21 6 3.8441 -3.5600 5.4425 22 7 3.2680 -1.0954 5.6700 23 6 2.8293 -0.1322 4.8920 24 6 2.5766 1.2750 5.2865 25 6 2.0753 1.7560 6.5790 26 6 2.0072 3.0939 6.4758 27 8 2.4169 3.4590 5.2516 28 6 2.7668 2.3858 4.5279 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 4.6022 0.9456 -0.9801 35 1 5.2405 -0.2027 -2.1811 36 1 3.7811 0.7484 -2.5470 37 1 6.8889 -0.6030 0.2985 38 1 2.2490 -1.6317 1.1526 39 1 2.9808 -2.7656 2.8574 40 1 4.9255 -3.6305 5.3254 41 1 3.5871 -3.6398 6.4988 42 1 3.3653 -4.3685 4.8900 43 1 1.8139 1.1564 7.4384 44 1 1.6760 3.7668 7.2530 45 1 3.1353 2.4016 3.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669856445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:43 Heat of formation + Delta-G solvation = 62.079095 kcal Electronic energy + Delta-G solvation = -29536.663003 eV Core-core repulsion = 25557.931361 eV Total energy + Delta-G solvation = -3978.731642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.26435 -42.02536 -40.15623 -37.88217 -35.65572 -34.99616 -33.36520 -32.93170 -32.11442 -30.65892 -30.51071 -27.99396 -27.62299 -27.30630 -24.67762 -23.45494 -23.05503 -22.28550 -21.66178 -20.86175 -20.39646 -19.01695 -18.61809 -18.02471 -17.02451 -16.89182 -16.85680 -16.61426 -16.43392 -15.85862 -15.68469 -15.36532 -15.10005 -14.73196 -14.61052 -14.36152 -13.96408 -13.85280 -13.68828 -13.66271 -13.37893 -13.28568 -13.05522 -13.01831 -12.82772 -12.69436 -12.48559 -12.10359 -12.00142 -11.88970 -11.87077 -11.60984 -11.23950 -10.70543 -10.56673 -10.23222 -9.86642 -9.56514 -9.19214 -8.70603 -7.72038 -5.18905 0.45600 0.56889 1.14291 1.40218 1.44972 1.51438 1.59187 1.89734 2.21240 2.49547 2.57138 2.71329 3.34067 3.44747 3.50853 3.78442 3.92708 4.08354 4.17099 4.20606 4.37407 4.38011 4.44741 4.54885 4.58074 4.61006 4.64446 4.65960 4.82414 4.90668 4.96967 4.98618 5.07411 5.20947 5.27424 5.34168 5.38354 5.48217 5.52272 5.71324 5.79191 5.85309 5.92482 6.20295 6.39665 6.48696 6.93407 7.22168 7.58073 7.95640 8.42855 9.31932 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.005033 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.139705 B = 5562.162711 C = 6903.439935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 H 0.041 0.959 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.180 3.820 7 C -0.241 4.241 8 H 0.085 0.915 9 C -0.047 4.047 10 N -0.936 5.936 11 Si 0.948 3.052 12 H -0.248 1.248 13 H -0.308 1.308 14 H -0.299 1.299 15 N -0.682 5.682 16 C 0.591 3.409 17 O -0.591 6.591 18 C -0.308 4.308 19 C 0.121 3.879 20 N -0.362 5.362 21 C 0.085 3.915 22 N -0.308 5.308 23 C 0.180 3.820 24 C -0.155 4.155 25 C -0.206 4.206 26 C -0.032 4.032 27 O -0.190 6.190 28 C 0.032 3.968 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.072 0.928 34 H -0.009 1.009 35 H 0.017 0.983 36 H 0.026 0.974 37 H 0.238 0.762 38 H 0.403 0.597 39 H 0.212 0.788 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.166 0.834 44 H 0.252 0.748 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -4.021 9.406 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.059 0.941 4 C 0.016 3.984 5 N -0.333 5.333 6 C 0.034 3.966 7 C -0.371 4.371 8 H 0.103 0.897 9 C -0.242 4.242 10 N -0.583 5.583 11 Si 0.778 3.222 12 H -0.171 1.171 13 H -0.236 1.236 14 H -0.227 1.227 15 N -0.330 5.330 16 C 0.380 3.620 17 O -0.474 6.474 18 C -0.323 4.323 19 C -0.030 4.030 20 N -0.141 5.141 21 C -0.054 4.054 22 N -0.129 5.129 23 C 0.013 3.987 24 C -0.159 4.159 25 C -0.225 4.225 26 C -0.098 4.098 27 O -0.085 6.085 28 C -0.039 4.039 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.009 0.991 35 H 0.036 0.964 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.239 0.761 39 H 0.229 0.771 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.144 0.856 43 H 0.183 0.817 44 H 0.268 0.732 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.630 -3.426 10.581 14.712 hybrid contribution 1.191 -0.889 -0.540 1.581 sum -8.439 -4.314 10.041 13.808 Atomic orbital electron populations 1.22021 0.94064 1.02540 1.01818 1.21681 0.93846 0.96274 0.86482 0.94109 1.21382 0.83207 0.99443 0.94407 1.44123 1.00818 1.22022 1.66354 1.20473 0.92710 0.90058 0.93328 1.19496 0.96834 0.90257 1.30547 0.89705 1.25648 0.99863 0.97999 1.00699 1.70285 1.12780 1.23650 1.51613 0.85477 0.78904 0.81271 0.76574 1.17146 1.23572 1.22694 1.45508 1.65276 1.14044 1.08197 1.17271 0.76345 0.85744 0.82684 1.90598 1.54294 1.16732 1.85823 1.21412 1.20961 0.94735 0.95165 1.23356 0.93782 0.96874 0.88950 1.48456 1.49150 1.09901 1.06584 1.22423 1.01530 0.78359 1.03055 1.77187 1.24715 0.91799 1.19207 1.21034 0.95607 0.91956 0.90108 1.19189 1.10992 0.89086 0.96609 1.22956 1.07016 0.95315 0.97219 1.24717 1.02784 0.96131 0.86130 1.83920 1.64985 1.35339 1.24305 1.24301 0.99757 0.83308 0.96521 0.90209 0.91102 0.94486 0.91168 0.91017 0.99101 0.96373 0.95595 0.95246 0.76115 0.77111 0.90026 0.87650 0.85641 0.81688 0.73238 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.48 71.98 0.68 -3.41 16 2 C 0.12 4.46 2.88 44.99 0.13 4.59 16 3 H 0.04 1.77 7.58 -2.39 -0.02 1.75 16 4 C 0.14 4.97 5.36 86.38 0.46 5.43 16 5 N -0.61 -27.53 2.82 -726.93 -2.05 -29.58 16 6 C 0.18 8.71 9.01 127.77 1.15 9.86 16 7 C -0.24 -11.36 8.02 84.03 0.67 -10.69 16 8 H 0.09 3.64 7.84 -2.91 -0.02 3.61 16 9 C -0.05 -2.41 5.13 84.86 0.44 -1.97 16 10 N -0.94 -53.75 10.59 21.65 0.23 -53.52 16 11 Si 0.95 40.79 29.57 68.60 2.03 42.82 16 12 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 13 H -0.31 -14.10 7.11 99.48 0.71 -13.40 16 14 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 15 N -0.68 -25.63 4.48 -445.97 -2.00 -27.63 16 16 C 0.59 24.73 7.77 86.61 0.67 25.40 16 17 O -0.59 -27.38 12.71 -4.13 -0.05 -27.43 16 18 C -0.31 -11.94 6.31 -18.78 -0.12 -12.06 16 19 C 0.12 3.79 10.94 84.29 0.92 4.71 16 20 N -0.36 -10.60 3.95 -367.93 -1.45 -12.05 16 21 C 0.09 1.48 11.39 127.77 1.46 2.94 16 22 N -0.31 -11.00 12.50 -44.51 -0.56 -11.55 16 23 C 0.18 7.07 7.34 44.08 0.32 7.39 16 24 C -0.16 -5.83 6.07 -18.93 -0.11 -5.95 16 25 C -0.21 -6.01 11.15 23.61 0.26 -5.74 16 26 C -0.03 -0.80 12.04 66.93 0.81 0.01 16 27 O -0.19 -6.13 10.55 0.95 0.01 -6.12 16 28 C 0.03 1.21 10.28 67.26 0.69 1.90 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 33 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 34 H -0.01 -0.52 7.42 -2.39 -0.02 -0.54 16 35 H 0.02 0.94 7.19 -2.38 -0.02 0.92 16 36 H 0.03 1.07 7.84 -2.39 -0.02 1.05 16 37 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.40 14.11 6.35 -92.71 -0.59 13.52 16 39 H 0.21 5.18 7.48 -2.91 -0.02 5.16 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.13 1.31 8.13 -2.39 -0.02 1.29 16 43 H 0.17 4.08 8.06 -2.91 -0.02 4.05 16 44 H 0.25 3.22 8.06 -2.91 -0.02 3.20 16 45 H 0.20 8.30 6.37 -2.91 -0.02 8.28 16 Total: -1.00 -74.90 378.89 5.02 -69.88 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.42 Total: 32.77 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 8.44 Total: 22.42 kcal Atomic # 7 Polarization: -128.50 SS G_CDS: -5.83 Total: -134.33 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.04 Total: -33.55 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -74.90 5.02 -69.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669856445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.957 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds