Wall clock time and date at job start Sat Apr 11 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47050 * 2 1 4 4 C 1.52999 * 109.47288 * 120.00369 * 2 1 3 5 5 N 1.46501 * 109.47220 * 174.99429 * 4 2 1 6 6 C 1.46495 * 120.00227 * 270.00192 * 5 4 2 7 7 C 1.36940 * 119.99637 * 90.00238 * 5 4 2 8 8 H 1.08003 * 119.99657 * 23.64176 * 7 5 4 9 9 C 1.38810 * 119.99857 * 203.64466 * 7 5 4 10 10 N 1.31618 * 120.00070 * 11.27880 * 9 7 5 11 11 Si 1.86798 * 119.99880 * 191.27630 * 9 7 5 12 12 H 1.48504 * 109.47233 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47199 * 120.00096 * 11 9 7 14 14 H 1.48506 * 109.47178 * 239.99764 * 11 9 7 15 15 N 1.46500 * 109.46913 * 240.00317 * 2 1 3 16 16 C 1.34779 * 120.00015 * 84.99901 * 15 2 1 17 17 O 1.21621 * 119.99884 * 359.97438 * 16 15 2 18 18 C 1.47238 * 119.99726 * 180.02562 * 16 15 2 19 19 C 1.38027 * 126.82247 * 0.15436 * 18 16 15 20 20 N 1.34096 * 107.88661 * 180.25898 * 19 18 16 21 21 C 1.46507 * 125.15801 * 179.71875 * 20 19 18 22 22 N 1.39772 * 109.68699 * 359.74874 * 20 19 18 23 23 C 1.31354 * 109.08800 * 359.97438 * 22 20 19 24 24 C 1.48321 * 126.51255 * 179.97438 * 23 22 20 25 25 C 1.46735 * 127.11966 * 325.02460 * 24 23 22 26 26 C 1.34366 * 106.02647 * 179.97438 * 25 24 23 27 27 O 1.34155 * 108.99954 * 0.02562 * 26 25 24 28 28 C 1.34089 * 110.75558 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46701 * 299.99324 * 1 2 3 31 31 H 1.08994 * 109.47338 * 59.99817 * 1 2 3 32 32 H 1.08999 * 109.47420 * 295.00179 * 4 2 1 33 33 H 1.09007 * 109.47227 * 55.00056 * 4 2 1 34 34 H 1.09006 * 109.47192 * 94.57914 * 6 5 4 35 35 H 1.09003 * 109.47410 * 214.57562 * 6 5 4 36 36 H 1.08998 * 109.47401 * 334.57893 * 6 5 4 37 37 H 0.97000 * 120.00218 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00165 * 265.00036 * 15 2 1 39 39 H 1.08006 * 126.05204 * 0.04324 * 19 18 16 40 40 H 1.08996 * 109.46943 * 270.01030 * 21 20 19 41 41 H 1.09005 * 109.46369 * 30.00568 * 21 20 19 42 42 H 1.08999 * 109.46839 * 150.00520 * 21 20 19 43 43 H 1.08001 * 126.98808 * 359.71743 * 25 24 23 44 44 H 1.08000 * 125.49974 * 180.02562 * 26 25 24 45 45 H 1.08002 * 125.76916 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8266 1.1904 6 6 4.1258 -1.9921 0.5610 7 6 4.2800 0.1646 1.7239 8 1 3.8836 0.8065 2.4968 9 6 5.5798 0.3444 1.2713 10 7 5.9916 -0.2794 0.1879 11 14 6.7446 1.4716 2.1997 12 1 6.0433 2.0492 3.3744 13 1 7.9238 0.6948 2.6594 14 1 7.1927 2.5674 1.3032 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8573 1.1618 -2.4118 18 6 2.6372 -0.7124 -3.5595 19 6 3.0004 -2.0404 -3.6577 20 7 3.3935 -2.2676 -4.9194 21 6 3.8642 -3.5547 -5.4376 22 7 3.2868 -1.0903 -5.6652 23 6 2.8331 -0.1311 -4.8910 24 6 2.5749 1.2748 -5.2869 25 6 3.3382 2.0784 -6.2486 26 6 2.7405 3.2813 -6.2839 27 8 1.6980 3.2759 -5.4395 28 6 1.5828 2.0849 -4.8343 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.7517 -0.1585 2.1370 33 1 1.6055 -1.7199 1.2950 34 1 4.3539 -1.7640 -0.4803 35 1 5.0468 -2.2395 1.0889 36 1 3.4423 -2.8399 0.6058 37 1 6.9001 -0.1541 -0.1282 38 1 2.2490 -1.6317 -1.1527 39 1 2.9759 -2.7668 -2.8588 40 1 4.9445 -3.6242 -5.3106 41 1 3.3812 -4.3648 -4.8911 42 1 3.6170 -3.6324 -6.4963 43 1 4.2066 1.7676 -6.8104 44 1 3.0495 4.1175 -6.8935 45 1 0.8291 1.8155 -4.1092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669856446.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:08:48 Heat of formation + Delta-G solvation = 84.791654 kcal Electronic energy + Delta-G solvation = -29270.010149 eV Core-core repulsion = 25292.263398 eV Total energy + Delta-G solvation = -3977.746751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.07038 -40.83674 -38.74488 -36.23564 -34.10522 -33.74905 -32.03643 -31.43608 -30.57898 -29.46383 -29.33817 -26.61807 -26.17511 -25.57275 -23.36250 -22.04345 -21.63437 -20.96985 -20.33135 -19.58549 -19.13558 -17.74291 -16.87666 -16.74283 -15.75249 -15.68925 -15.44985 -15.26823 -14.84487 -14.75060 -14.09855 -13.85520 -13.57818 -13.31632 -13.20642 -13.00501 -12.86870 -12.68869 -12.56476 -12.32197 -12.12516 -11.99089 -11.83071 -11.41389 -11.08358 -10.84505 -10.77444 -10.72867 -10.53203 -10.19028 -10.04997 -9.92296 -9.83655 -9.27491 -9.05382 -8.60259 -8.50530 -8.26261 -7.96001 -6.72193 -5.70939 -3.16660 1.69989 1.81690 2.28008 2.42676 3.16305 3.35838 3.40026 3.47831 3.49440 3.83100 4.10154 4.41254 4.53174 4.61224 4.87913 5.02759 5.07398 5.27922 5.35509 5.37212 5.49251 5.51694 5.62298 5.63831 5.73118 5.80039 5.93689 6.04088 6.12816 6.13279 6.28595 6.44016 6.49942 6.51137 6.55431 6.64229 6.68856 6.89985 6.95531 7.26195 7.32234 7.38452 7.64462 7.71773 7.82938 8.26047 8.41117 8.97348 9.24956 9.87455 10.35323 11.34269 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.004187 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.042530 B = 6686.487005 C = 7030.574928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 H 0.087 0.913 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.162 3.838 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.695 5.695 16 C 0.599 3.401 17 O -0.554 6.554 18 C -0.271 4.271 19 C 0.106 3.894 20 N -0.368 5.368 21 C 0.099 3.901 22 N -0.292 5.292 23 C 0.203 3.797 24 C -0.136 4.136 25 C -0.186 4.186 26 C -0.054 4.054 27 O -0.183 6.183 28 C 0.050 3.950 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.042 0.958 36 H -0.007 1.007 37 H 0.250 0.750 38 H 0.390 0.610 39 H 0.182 0.818 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.201 0.799 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.957 -5.854 -11.149 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 H 0.105 0.895 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.732 3.268 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.343 5.343 16 C 0.387 3.613 17 O -0.434 6.434 18 C -0.286 4.286 19 C -0.043 4.043 20 N -0.148 5.148 21 C -0.042 4.042 22 N -0.113 5.113 23 C 0.035 3.965 24 C -0.139 4.139 25 C -0.206 4.206 26 C -0.120 4.120 27 O -0.079 6.079 28 C -0.020 4.020 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.060 0.940 38 H 0.224 0.776 39 H 0.199 0.801 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.166 0.834 44 H 0.217 0.783 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -8.694 -5.287 -12.403 16.043 hybrid contribution 1.185 -0.011 1.199 1.686 sum -7.509 -5.298 -11.205 14.492 Atomic orbital electron populations 1.22153 0.96966 1.00956 1.01657 1.21837 0.91532 0.99262 0.86219 0.89513 1.21199 0.85771 0.97121 0.94459 1.43865 0.99063 1.20816 1.68128 1.20838 0.94461 0.85051 0.97915 1.19191 0.94508 1.10580 1.14196 0.91412 1.25009 0.98930 0.99005 0.96301 1.70035 1.17047 1.45640 1.22001 0.86228 0.81057 0.80334 0.79187 1.20313 1.21768 1.21778 1.45597 1.66346 1.13266 1.09115 1.16969 0.76659 0.85835 0.81840 1.90635 1.52437 1.15290 1.85086 1.21366 1.18747 0.93224 0.95264 1.22912 0.95962 0.97221 0.88197 1.48010 1.50340 1.09267 1.07174 1.21934 1.00819 0.79854 1.01586 1.77295 1.24628 0.90962 1.18388 1.20769 0.95038 0.91162 0.89512 1.18831 1.00152 0.91215 1.03701 1.22733 1.02434 0.93651 1.01784 1.23737 0.90507 0.99847 0.97894 1.83913 1.43534 1.34420 1.45999 1.24571 1.00494 0.81169 0.95779 0.93350 0.92205 0.92893 0.92348 0.94170 0.95071 0.93955 0.98884 0.94007 0.77638 0.80055 0.90369 0.89190 0.89233 0.83390 0.78276 0.76592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.19 2.88 -67.93 -0.20 1.99 16 3 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 5 N -0.60 -14.08 2.78 -181.12 -0.50 -14.59 16 6 C 0.16 3.65 7.61 59.84 0.46 4.10 16 7 C -0.26 -6.89 9.66 -15.06 -0.15 -7.03 16 8 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -26.05 10.66 55.49 0.59 -25.46 16 11 Si 0.90 22.26 29.57 -169.99 -5.03 17.24 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 N -0.70 -12.50 4.40 -54.94 -0.24 -12.74 16 16 C 0.60 11.75 7.77 -12.60 -0.10 11.65 16 17 O -0.55 -12.08 12.70 5.26 0.07 -12.01 16 18 C -0.27 -4.84 6.31 -102.95 -0.65 -5.49 16 19 C 0.11 1.51 10.94 -16.64 -0.18 1.33 16 20 N -0.37 -5.05 3.95 -67.64 -0.27 -5.32 16 21 C 0.10 0.82 11.39 59.85 0.68 1.50 16 22 N -0.29 -4.93 12.50 34.58 0.43 -4.50 16 23 C 0.20 3.71 7.34 -80.55 -0.59 3.12 16 24 C -0.14 -2.40 6.07 -103.17 -0.63 -3.03 16 25 C -0.19 -2.85 11.15 -37.52 -0.42 -3.27 16 26 C -0.05 -0.72 12.04 29.37 0.35 -0.36 16 27 O -0.18 -2.84 10.55 6.68 0.07 -2.77 16 28 C 0.05 0.84 10.28 29.88 0.31 1.15 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.66 7.86 -51.93 -0.41 0.26 16 34 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 35 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 36 H -0.01 -0.14 7.84 -51.93 -0.41 -0.54 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.39 6.32 6.13 -40.82 -0.25 6.07 16 39 H 0.18 1.96 7.48 -52.48 -0.39 1.57 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.48 8.13 -51.93 -0.42 0.05 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.22 3.55 6.35 -52.49 -0.33 3.21 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -35.29 378.41 -6.31 -41.60 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.27 Total: 6.39 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.87 Total: 6.47 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.01 Total: -62.61 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.14 Total: -14.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.29 -6.31 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669856446.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.391 kcal (2) G-P(sol) polarization free energy of solvation -35.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds