Wall clock time and date at job start Sat Apr 11 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99722 * 2 1 4 4 C 1.38185 * 120.21462 * 359.71737 * 3 2 1 5 5 C 1.38824 * 120.67804 * 179.70168 * 4 3 2 6 6 C 1.36716 * 120.58365 * 0.61980 * 5 4 3 7 7 C 1.39244 * 119.75819 * 359.67532 * 6 5 4 8 8 C 1.46909 * 135.43999 * 180.02562 * 7 6 5 9 9 C 1.47361 * 126.81686 * 359.96807 * 8 7 6 10 10 O 1.21608 * 120.00097 * 359.97078 * 9 8 7 11 11 N 1.34770 * 119.99948 * 179.97438 * 9 8 7 12 12 C 1.46504 * 120.00147 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47293 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.46890 * 54.99507 * 13 12 11 15 15 C 1.52996 * 109.47104 * 295.00029 * 13 12 11 16 16 C 1.52993 * 109.47204 * 174.99922 * 13 12 11 17 17 N 1.46500 * 109.47386 * 184.99975 * 16 13 12 18 18 C 1.36938 * 120.00090 * 180.02562 * 17 16 13 19 19 H 1.07994 * 120.00221 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99719 * 179.97438 * 18 17 16 21 21 N 1.31616 * 119.99876 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99860 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47140 * 90.00116 * 22 20 18 24 24 H 1.48504 * 109.46804 * 209.99914 * 22 20 18 25 25 H 1.48492 * 109.47484 * 329.99857 * 22 20 18 26 26 N 1.31601 * 106.36689 * 179.97438 * 8 7 6 27 27 N 1.28388 * 111.94094 * 0.02562 * 26 8 7 28 28 H 0.97002 * 124.38979 * 180.02562 * 27 26 8 29 29 C 1.37105 * 111.22862 * 359.97438 * 27 26 8 30 30 H 1.09002 * 109.47382 * 60.00054 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00041 * 1 2 3 32 32 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.66034 * 0.03537 * 4 3 2 34 34 H 1.08001 * 119.71203 * 180.27597 * 5 4 3 35 35 H 1.08005 * 120.12359 * 179.65743 * 6 5 4 36 36 H 0.97005 * 120.00066 * 359.97438 * 11 9 8 37 37 H 1.08999 * 109.46994 * 299.99512 * 12 11 9 38 38 H 1.08994 * 109.47035 * 59.99815 * 12 11 9 39 39 H 1.09000 * 109.47639 * 179.97438 * 15 13 12 40 40 H 1.09003 * 109.46999 * 300.00010 * 15 13 12 41 41 H 1.09006 * 109.47651 * 59.99610 * 15 13 12 42 42 H 1.09000 * 109.46921 * 304.99936 * 16 13 12 43 43 H 1.09003 * 109.47284 * 64.99952 * 16 13 12 44 44 H 0.97006 * 119.99607 * 0.02562 * 17 16 13 45 45 H 0.96992 * 119.99944 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2978 2.3728 -0.0059 5 6 1.9179 3.6148 0.0003 6 6 3.2816 3.7114 -0.0004 7 6 4.0564 2.5545 -0.0006 8 6 5.4954 2.2583 -0.0008 9 6 6.5981 3.2358 -0.0015 10 8 6.3546 4.4273 -0.0027 11 7 7.8766 2.8094 -0.0011 12 6 8.9730 3.7811 -0.0025 13 6 10.3115 3.0399 -0.0010 14 1 10.3439 2.3468 -0.8417 15 6 10.4620 2.2617 1.3076 16 6 11.4538 4.0497 -0.1281 17 7 12.7269 3.3346 -0.2468 18 6 13.8967 4.0353 -0.3723 19 1 13.8808 5.1150 -0.3842 20 6 15.1030 3.3576 -0.4842 21 7 16.2273 4.0310 -0.6053 22 14 15.1304 1.4899 -0.4642 23 1 14.9990 0.9781 -1.8521 24 1 16.4135 1.0199 0.1173 25 1 14.0007 0.9870 0.3579 26 7 5.6040 0.9468 -0.0002 27 7 4.4568 0.3704 -0.0002 28 1 4.3267 -0.5908 0.0005 29 6 3.4394 1.2895 -0.0003 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2194 2.3139 -0.0099 34 1 1.3178 4.5128 0.0000 35 1 3.7563 4.6816 -0.0012 36 1 8.0709 1.8590 0.0001 37 1 8.9040 4.4054 -0.8933 38 1 8.9041 4.4078 0.8866 39 1 11.4154 1.7332 1.3086 40 1 10.4295 2.9547 2.1483 41 1 9.6482 1.5422 1.3983 42 1 11.2983 4.6643 -1.0148 43 1 11.4759 4.6866 0.7562 44 1 12.7411 2.3647 -0.2364 45 1 17.0702 3.5575 -0.6838 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753616873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:50 Heat of formation + Delta-G solvation = 24.622500 kcal Electronic energy + Delta-G solvation = -27089.206835 eV Core-core repulsion = 23108.850953 eV Total energy + Delta-G solvation = -3980.355882 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.89036 -40.00349 -39.45541 -37.23234 -36.89748 -34.47477 -32.82836 -32.17284 -30.86924 -30.52887 -29.68512 -27.88322 -26.80583 -25.83280 -23.98537 -23.24302 -22.67466 -21.79688 -20.55550 -19.97180 -19.15131 -18.19705 -17.67494 -17.18522 -16.62945 -16.43291 -16.08754 -15.87547 -15.50707 -15.25501 -15.22374 -14.57828 -14.27351 -14.08311 -13.91194 -13.61962 -13.15750 -12.98654 -12.78888 -12.57039 -12.42198 -12.18085 -12.06833 -11.84209 -11.66622 -11.43021 -11.39487 -11.01760 -10.73238 -10.60815 -10.57891 -10.22334 -10.18190 -10.05114 -9.55865 -9.28362 -9.09233 -8.87616 -8.10772 -7.20526 -5.74432 -3.09762 0.44289 0.88468 1.56355 2.26244 2.57274 3.03675 3.04530 3.38068 3.40617 3.40687 3.46310 3.95169 4.08131 4.35410 4.49478 4.58854 4.58945 4.60818 4.74763 4.88988 4.94519 4.98024 5.10426 5.13927 5.29266 5.31547 5.56466 5.61321 5.70749 5.78170 5.89311 5.92622 5.98817 6.12180 6.14037 6.21801 6.27473 6.38400 6.48415 6.50876 6.69430 6.75021 6.78952 7.27340 7.53151 8.02323 8.08672 8.44610 9.23733 9.95910 10.15759 11.44071 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.001913 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.161040 B =14636.351979 C =15430.828014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.129 3.871 4 C -0.182 4.182 5 C -0.100 4.100 6 C -0.079 4.079 7 C -0.072 4.072 8 C 0.001 3.999 9 C 0.604 3.396 10 O -0.529 6.529 11 N -0.711 5.711 12 C 0.127 3.873 13 C -0.115 4.115 14 H 0.077 0.923 15 C -0.145 4.145 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 N -0.197 5.197 27 N -0.402 5.402 28 H 0.451 0.549 29 C 0.044 3.956 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.406 0.594 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.045 0.955 42 H 0.031 0.969 43 H 0.031 0.969 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.978 -9.018 2.176 38.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.081 3.919 4 C -0.204 4.204 5 C -0.119 4.119 6 C -0.099 4.099 7 C -0.079 4.079 8 C -0.170 4.170 9 C 0.388 3.612 10 O -0.403 6.403 11 N -0.362 5.362 12 C 0.004 3.996 13 C -0.134 4.134 14 H 0.095 0.905 15 C -0.202 4.202 16 C 0.037 3.963 17 N -0.400 5.400 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.582 5.582 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.204 1.204 26 N -0.029 5.029 27 N -0.122 5.122 28 H 0.296 0.704 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.242 0.758 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.049 0.951 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -36.086 -8.973 2.160 37.247 hybrid contribution -0.656 -1.809 -0.006 1.924 sum -36.742 -10.782 2.154 38.352 Atomic orbital electron populations 1.23093 0.77563 1.04229 1.01715 1.86011 1.22095 1.26429 1.89116 1.17737 0.87590 0.85422 1.01129 1.21031 0.99964 0.91404 1.07968 1.20614 0.94208 0.97067 1.00009 1.20336 0.92778 0.97723 0.99082 1.19216 0.91180 0.92493 1.05036 1.22770 0.92933 0.89518 1.11762 1.16552 0.81249 0.86396 0.77009 1.90812 1.83847 1.15358 1.50265 1.45894 1.05027 1.11302 1.74006 1.21473 0.84204 0.90982 1.02989 1.21611 0.93916 0.98780 0.99116 0.90492 1.21828 1.01589 0.99882 0.96911 1.20555 0.84027 0.92788 0.98918 1.42687 1.02595 1.04443 1.90295 1.19076 0.83243 0.92813 1.42155 0.89145 1.24672 0.95250 0.97225 1.02081 1.69699 0.97286 1.34183 1.57078 0.86548 0.76787 0.87398 0.77771 1.21117 1.21764 1.20363 1.72930 1.08383 1.09108 1.12444 1.42967 1.00402 1.09575 1.59305 0.70386 1.18327 0.88518 0.90270 1.09843 0.92294 0.92304 0.88025 0.84552 0.84802 0.83934 0.75849 0.90737 0.90762 0.91787 0.92333 0.93547 0.95140 0.95080 0.80631 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.32 -2.26 10.51 -19.51 -0.20 -2.46 16 3 C 0.13 1.08 6.70 -39.11 -0.26 0.82 16 4 C -0.18 -1.26 9.03 -39.38 -0.36 -1.61 16 5 C -0.10 -0.75 9.97 -39.91 -0.40 -1.15 16 6 C -0.08 -0.80 9.86 -39.76 -0.39 -1.19 16 7 C -0.07 -0.83 6.33 -105.07 -0.67 -1.50 16 8 C 0.00 0.01 7.32 -80.75 -0.59 -0.58 16 9 C 0.60 8.29 7.81 -12.55 -0.10 8.19 16 10 O -0.53 -8.55 16.37 5.27 0.09 -8.46 16 11 N -0.71 -8.75 5.28 -61.40 -0.32 -9.07 16 12 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 13 C -0.12 -1.68 2.46 -90.62 -0.22 -1.90 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.14 -2.03 8.94 37.16 0.33 -1.70 16 16 C 0.16 3.13 5.65 -4.05 -0.02 3.10 16 17 N -0.75 -17.83 5.13 -59.91 -0.31 -18.13 16 18 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 19 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 20 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 22 Si 0.88 22.17 27.74 -169.99 -4.71 17.45 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 26 N -0.20 -2.14 11.80 34.47 0.41 -1.73 16 27 N -0.40 -3.61 6.85 32.41 0.22 -3.39 16 28 H 0.45 2.64 8.96 -190.49 -1.71 0.93 16 29 C 0.04 0.44 7.32 -84.07 -0.62 -0.18 16 30 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 31 H 0.06 0.13 7.68 -51.93 -0.40 -0.26 16 32 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.14 0.55 6.27 -52.49 -0.33 0.22 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.14 1.47 7.63 -52.48 -0.40 1.07 16 36 H 0.41 4.41 7.39 -40.82 -0.30 4.11 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.02 7.18 -51.93 -0.37 0.65 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.54 7.18 -51.93 -0.37 0.17 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.36 8.27 4.71 -40.82 -0.19 8.07 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -35.29 376.72 -8.40 -43.70 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.45 Total: 7.28 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.57 Total: -2.04 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.77 Total: -61.14 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -0.12 Total: -10.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.29 -8.40 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753616873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.318 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds