Wall clock time and date at job start Sat Apr 11 2020 03:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47052 * 2 1 4 4 C 1.53006 * 109.47330 * 119.99504 * 2 1 3 5 5 N 1.46494 * 109.47290 * 175.00084 * 4 2 1 6 6 C 1.46498 * 120.00041 * 89.99968 * 5 4 2 7 7 C 1.36939 * 119.99692 * 270.00416 * 5 4 2 8 8 H 1.07995 * 120.00720 * 22.01386 * 7 5 4 9 9 C 1.38818 * 119.99823 * 202.01141 * 7 5 4 10 10 N 1.31618 * 119.99752 * 14.21364 * 9 7 5 11 11 Si 1.86792 * 120.00073 * 194.21379 * 9 7 5 12 12 H 1.48503 * 109.47378 * 90.00151 * 11 9 7 13 13 H 1.48503 * 109.46970 * 210.00042 * 11 9 7 14 14 H 1.48501 * 109.47212 * 329.99969 * 11 9 7 15 15 N 1.46492 * 109.47030 * 239.99701 * 2 1 3 16 16 C 1.34780 * 120.00128 * 84.72594 * 15 2 1 17 17 O 1.21283 * 119.99547 * 0.27133 * 16 15 2 18 18 C 1.50702 * 120.00371 * 180.27297 * 16 15 2 19 19 C 1.52995 * 109.47406 * 179.97438 * 18 16 15 20 20 H 1.08996 * 109.38483 * 305.00334 * 19 18 16 21 21 C 1.52582 * 109.38802 * 185.21219 * 19 18 16 22 22 C 1.52584 * 110.64716 * 169.85507 * 21 19 18 23 23 C 1.53046 * 109.98333 * 69.98548 * 22 21 19 24 24 S 1.81665 * 108.99825 * 296.35456 * 23 22 21 25 25 O 1.42098 * 108.66200 * 168.62908 * 24 23 22 26 26 O 1.42101 * 108.66330 * 299.97008 * 24 23 22 27 27 C 1.53039 * 109.38351 * 64.79218 * 19 18 16 28 28 H 1.09003 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47312 * 300.00437 * 1 2 3 30 30 H 1.08992 * 109.47379 * 60.00301 * 1 2 3 31 31 H 1.09000 * 109.47180 * 295.00355 * 4 2 1 32 32 H 1.09005 * 109.46475 * 55.00002 * 4 2 1 33 33 H 1.08999 * 109.46989 * 95.14828 * 6 5 4 34 34 H 1.09006 * 109.46995 * 215.14081 * 6 5 4 35 35 H 1.08998 * 109.47276 * 335.14660 * 6 5 4 36 36 H 0.97001 * 119.99914 * 179.97438 * 10 9 7 37 37 H 0.97005 * 120.00475 * 264.99791 * 15 2 1 38 38 H 1.08997 * 109.47088 * 300.00161 * 18 16 15 39 39 H 1.09005 * 109.46697 * 59.99738 * 18 16 15 40 40 H 1.08999 * 109.24064 * 290.15970 * 21 19 18 41 41 H 1.09002 * 109.24288 * 49.55186 * 21 19 18 42 42 H 1.08992 * 109.38884 * 190.14309 * 22 21 19 43 43 H 1.09001 * 109.38452 * 309.83426 * 22 21 19 44 44 H 1.09000 * 109.54815 * 56.20736 * 23 22 21 45 45 H 1.08998 * 109.54701 * 176.40183 * 23 22 21 46 46 H 1.09001 * 109.54587 * 303.66010 * 27 19 18 47 47 H 1.08994 * 109.55423 * 63.94601 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1907 6 6 4.3343 0.2342 1.7613 7 6 4.0849 -1.9158 0.6024 8 1 3.5313 -2.5055 -0.1131 9 6 5.3897 -2.2623 0.9257 10 7 5.9684 -1.7332 1.9829 11 14 6.3242 -3.4792 -0.1396 12 1 7.0474 -2.7468 -1.2101 13 1 7.2999 -4.2226 0.6976 14 1 5.3684 -4.4359 -0.7532 15 7 2.0183 -0.6906 -1.1961 16 6 2.1418 -0.0197 -2.3585 17 8 1.8533 1.1570 -2.4130 18 6 2.6382 -0.7317 -3.5905 19 6 2.6839 0.2498 -4.7632 20 1 1.7028 0.7075 -4.8903 21 6 3.0618 -0.5002 -6.0371 22 6 2.8737 0.3903 -7.2617 23 6 3.9296 1.4982 -7.2699 24 16 3.6826 2.5614 -5.8177 25 8 4.8089 3.4173 -5.6840 26 8 2.3810 3.1275 -5.8848 27 6 3.7189 1.3393 -4.4737 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.7517 -0.1582 2.1370 32 1 1.6054 -1.7197 1.2952 33 1 4.6182 -0.0347 2.7787 34 1 5.2313 0.3571 1.1542 35 1 3.7742 1.1692 1.7754 36 1 6.8800 -1.9756 2.2090 37 1 2.2490 -1.6318 -1.1525 38 1 3.6382 -1.1238 -3.4053 39 1 1.9643 -1.5539 -3.8312 40 1 4.1048 -0.8105 -5.9752 41 1 2.4303 -1.3833 -6.1347 42 1 2.9733 -0.2111 -8.1652 43 1 1.8801 0.8378 -7.2344 44 1 4.9243 1.0542 -7.2319 45 1 3.8292 2.0909 -8.1791 46 1 3.4785 1.8293 -3.5302 47 1 4.7112 0.8926 -4.4118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329989.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:16 Heat of formation + Delta-G solvation = -125.293458 kcal Electronic energy + Delta-G solvation = -28178.415816 eV Core-core repulsion = 24294.710290 eV Total energy + Delta-G solvation = -3883.705525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93683 -38.73511 -38.04899 -37.55955 -37.05362 -35.69189 -33.76244 -33.14059 -31.76660 -29.08786 -28.27332 -28.06175 -27.37815 -24.18974 -23.42268 -22.02221 -21.30359 -21.03374 -19.81327 -18.76272 -17.78077 -17.68875 -17.47369 -17.01284 -16.91822 -16.64154 -16.15091 -15.77195 -15.52987 -15.37374 -14.95580 -14.62558 -14.58682 -14.33218 -13.89845 -13.68664 -13.60969 -13.51887 -13.19346 -13.14304 -13.08382 -13.05751 -12.81818 -12.63670 -12.53780 -12.31553 -12.24718 -12.20633 -12.18619 -11.99841 -11.86130 -11.74448 -11.64740 -11.45530 -11.02864 -10.58639 -10.53179 -9.80309 -8.74590 -7.76752 -5.25008 -0.89126 1.50639 1.51513 1.60296 1.79350 1.85860 2.48401 2.55396 2.75861 3.00546 3.37599 3.61333 3.65471 3.71434 3.79736 3.82917 3.96876 4.08666 4.19483 4.25667 4.42287 4.51399 4.54135 4.66648 4.70964 4.71572 4.75627 4.82287 4.83192 4.89411 4.94698 5.00551 5.07027 5.14641 5.19084 5.27375 5.29718 5.42995 5.43913 5.63167 5.68506 5.81544 6.34499 6.81962 7.16481 7.49672 7.88965 8.36979 9.27411 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003807 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.429847 B = 7352.492835 C = 8227.696691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.045 0.955 4 C 0.142 3.858 5 N -0.613 5.613 6 C 0.179 3.821 7 C -0.244 4.244 8 H 0.088 0.912 9 C -0.060 4.060 10 N -0.944 5.944 11 Si 0.962 3.038 12 H -0.290 1.290 13 H -0.308 1.308 14 H -0.252 1.252 15 N -0.698 5.698 16 C 0.500 3.500 17 O -0.594 6.594 18 C -0.130 4.130 19 C -0.058 4.058 20 H 0.082 0.918 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.575 4.575 24 S 2.404 3.596 25 O -0.998 6.998 26 O -0.983 6.983 27 C -0.602 4.602 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.006 0.994 34 H 0.009 0.991 35 H 0.017 0.983 36 H 0.243 0.757 37 H 0.407 0.593 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.117 0.883 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 -2.653 -19.043 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.063 0.937 4 C 0.016 3.984 5 N -0.336 5.336 6 C 0.034 3.966 7 C -0.374 4.374 8 H 0.106 0.894 9 C -0.255 4.255 10 N -0.592 5.592 11 Si 0.791 3.209 12 H -0.217 1.217 13 H -0.235 1.235 14 H -0.176 1.176 15 N -0.348 5.348 16 C 0.288 3.712 17 O -0.476 6.476 18 C -0.171 4.171 19 C -0.078 4.078 20 H 0.100 0.900 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.709 4.709 24 S 2.593 3.407 25 O -0.995 6.995 26 O -0.980 6.980 27 C -0.733 4.733 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.024 0.976 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.052 0.948 37 H 0.244 0.756 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.180 0.820 45 H 0.169 0.831 46 H 0.135 0.865 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.324 -0.892 -18.914 20.684 hybrid contribution 1.317 -1.027 0.473 1.736 sum -7.006 -1.919 -18.442 19.821 Atomic orbital electron populations 1.21997 0.93923 1.02638 1.01935 1.21601 0.94111 0.96266 0.86488 0.93704 1.21215 0.83420 0.99273 0.94513 1.44066 1.00737 1.20542 1.68211 1.20459 0.92296 0.87596 0.96279 1.19517 0.96729 1.04511 1.16652 0.89412 1.25818 1.00206 1.01350 0.98101 1.70261 1.13429 1.48556 1.26911 0.85328 0.78719 0.78922 0.77942 1.21719 1.23530 1.17592 1.46015 1.65425 1.14552 1.08832 1.21351 0.76747 0.87152 0.85975 1.90614 1.52909 1.17927 1.86133 1.21802 1.05012 0.99493 0.90745 1.20701 0.97695 0.93624 0.95811 0.89958 1.21871 1.05390 0.99635 0.90394 1.21394 0.96953 0.95437 1.01223 1.30043 1.10866 1.12770 1.17212 1.08064 0.73502 0.78405 0.80718 1.93513 1.53948 1.65216 1.86833 1.93514 1.40809 1.76909 1.86769 1.30362 1.09338 1.15054 1.18508 0.91054 0.90796 0.93766 0.92274 0.91730 0.97584 0.97180 0.96429 0.94763 0.75585 0.87361 0.85024 0.88501 0.87047 0.86195 0.90345 0.81993 0.83056 0.86516 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 2 C 0.12 4.10 2.88 44.99 0.13 4.23 16 3 H 0.04 1.79 7.58 -2.39 -0.02 1.77 16 4 C 0.14 5.17 5.30 86.38 0.46 5.62 16 5 N -0.61 -28.37 2.82 -726.93 -2.05 -30.42 16 6 C 0.18 8.89 8.98 127.77 1.15 10.04 16 7 C -0.24 -11.76 8.85 84.03 0.74 -11.02 16 8 H 0.09 3.75 6.22 -2.91 -0.02 3.73 16 9 C -0.06 -3.14 5.08 84.86 0.43 -2.71 16 10 N -0.94 -54.35 10.72 21.65 0.23 -54.12 16 11 Si 0.96 41.14 29.58 68.60 2.03 43.17 16 12 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.31 -13.92 7.11 99.48 0.71 -13.22 16 14 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 15 N -0.70 -21.82 4.49 -442.53 -1.99 -23.81 16 16 C 0.50 15.53 7.48 87.66 0.66 16.19 16 17 O -0.59 -23.01 13.62 -3.04 -0.04 -23.05 16 18 C -0.13 -2.63 5.15 29.85 0.15 -2.48 16 19 C -0.06 -1.10 1.67 -10.92 -0.02 -1.12 16 20 H 0.08 1.82 7.82 -2.39 -0.02 1.80 16 21 C -0.14 -1.25 4.92 30.32 0.15 -1.11 16 22 C -0.11 -0.95 5.73 30.47 0.17 -0.78 16 23 C -0.58 -6.14 6.35 72.00 0.46 -5.68 16 24 S 2.40 56.44 5.31 -56.49 -0.30 56.14 16 25 O -1.00 -31.74 18.10 -127.40 -2.31 -34.05 16 26 O -0.98 -31.08 17.94 -127.40 -2.28 -33.36 16 27 C -0.60 -14.09 5.39 72.00 0.39 -13.70 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 32 H 0.06 2.19 8.04 -2.38 -0.02 2.17 16 33 H 0.01 0.32 7.36 -2.39 -0.02 0.30 16 34 H 0.01 0.52 7.31 -2.38 -0.02 0.50 16 35 H 0.02 0.77 8.03 -2.39 -0.02 0.75 16 36 H 0.24 13.83 8.31 -92.71 -0.77 13.06 16 37 H 0.41 11.83 6.51 -92.70 -0.60 11.23 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.13 1.73 8.09 -2.38 -0.02 1.71 16 40 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 41 H 0.11 0.57 8.06 -2.39 -0.02 0.55 16 42 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 0.83 8.01 -2.39 -0.02 0.81 16 44 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.15 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.12 3.72 5.87 -2.39 -0.01 3.71 16 47 H 0.15 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -81.71 379.66 -0.80 -82.51 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.35 Total: 22.69 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 5.55 Total: -5.70 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -3.80 Total: -108.34 kcal Atomic # 8 Polarization: -85.83 SS G_CDS: -4.63 Total: -90.46 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 56.44 SS G_CDS: -0.30 Total: 56.14 kcal Total: -81.71 -0.80 -82.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329989.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.785 kcal (2) G-P(sol) polarization free energy of solvation -81.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds