Wall clock time and date at job start Sat Apr 11 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.53004 * 109.46658 * 240.00560 * 2 1 3 5 5 N 1.46500 * 109.46862 * 184.99837 * 4 2 1 6 6 C 1.46493 * 120.00179 * 269.99598 * 5 4 2 7 7 C 1.36934 * 119.99874 * 90.00235 * 5 4 2 8 8 H 1.08003 * 120.00335 * 341.43200 * 7 5 4 9 9 C 1.38813 * 119.99971 * 161.43494 * 7 5 4 10 10 N 1.31616 * 120.00141 * 346.77861 * 9 7 5 11 11 Si 1.86803 * 120.00007 * 166.77217 * 9 7 5 12 12 H 1.48499 * 109.47230 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47427 * 300.00379 * 11 9 7 14 14 H 1.48498 * 109.47175 * 60.00015 * 11 9 7 15 15 N 1.46496 * 109.47300 * 120.00825 * 2 1 3 16 16 C 1.34777 * 119.99542 * 274.99486 * 15 2 1 17 17 O 1.21279 * 120.00149 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99843 * 180.02562 * 16 15 2 19 19 C 1.53008 * 109.47249 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.38495 * 55.21035 * 19 18 16 21 21 C 1.52583 * 109.38579 * 174.99668 * 19 18 16 22 22 C 1.52584 * 110.64378 * 190.14563 * 21 19 18 23 23 C 1.53038 * 109.98470 * 290.01160 * 22 21 19 24 24 S 1.81680 * 108.99521 * 63.65060 * 23 22 21 25 25 O 1.42098 * 108.66506 * 60.02894 * 24 23 22 26 26 O 1.42100 * 108.66088 * 191.27431 * 24 23 22 27 27 C 1.53034 * 109.38365 * 295.52606 * 19 18 16 28 28 H 1.09000 * 109.47349 * 59.99294 * 1 2 3 29 29 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46911 * 299.99519 * 1 2 3 31 31 H 1.08999 * 109.47191 * 65.00343 * 4 2 1 32 32 H 1.08998 * 109.46949 * 304.99592 * 4 2 1 33 33 H 1.09000 * 109.47591 * 264.86529 * 6 5 4 34 34 H 1.09002 * 109.47462 * 24.86818 * 6 5 4 35 35 H 1.09000 * 109.47327 * 144.86571 * 6 5 4 36 36 H 0.97007 * 119.99768 * 180.02562 * 10 9 7 37 37 H 0.96996 * 120.00342 * 94.99763 * 15 2 1 38 38 H 1.09003 * 109.47013 * 299.99526 * 18 16 15 39 39 H 1.09001 * 109.47745 * 60.00040 * 18 16 15 40 40 H 1.09002 * 109.24910 * 310.44440 * 21 19 18 41 41 H 1.09001 * 109.24220 * 69.88187 * 21 19 18 42 42 H 1.08999 * 109.38819 * 50.16989 * 22 21 19 43 43 H 1.09003 * 109.38569 * 169.96067 * 22 21 19 44 44 H 1.09003 * 109.54943 * 183.50049 * 23 22 21 45 45 H 1.08991 * 109.55431 * 303.79469 * 23 22 21 46 46 H 1.09004 * 109.54423 * 296.04613 * 27 19 18 47 47 H 1.08997 * 109.55404 * 56.33706 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.4999 -0.8263 -1.1908 6 6 4.3341 0.2341 -1.7615 7 6 4.0848 -1.9158 -0.6027 8 1 3.5135 -2.5380 0.0703 9 6 5.4121 -2.2206 -0.8714 10 7 6.0319 -1.6349 -1.8739 11 14 6.3188 -3.4621 0.1899 12 1 7.7127 -3.6084 -0.3007 13 1 6.3370 -2.9901 1.5978 14 1 5.6274 -4.7743 0.1168 15 7 2.0183 -0.6908 1.1960 16 6 2.1471 -0.0185 2.3570 17 8 1.8583 1.1582 2.4117 18 6 2.6500 -0.7288 3.5872 19 6 2.7009 0.2541 4.7588 20 1 1.7192 0.7085 4.8927 21 6 3.0905 -0.4936 6.0305 22 6 2.9084 0.3976 7.2556 23 6 3.9606 1.5089 7.2552 24 16 3.6994 2.5700 5.8038 25 8 2.3964 3.1318 5.8797 26 8 4.8209 3.4311 5.6624 27 6 3.7282 1.3482 4.4596 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7515 -0.1581 -2.1370 32 1 1.6052 -1.7197 -1.2953 33 1 4.6179 -0.0347 -2.7790 34 1 3.7742 1.1692 -1.7754 35 1 5.2312 0.3569 -1.1546 36 1 6.9594 -1.8482 -2.0619 37 1 2.2490 -1.6319 1.1524 38 1 1.9777 -1.5511 3.8323 39 1 3.6493 -1.1207 3.3977 40 1 2.4628 -1.3787 6.1337 41 1 4.1344 -0.7997 5.9617 42 1 1.9131 0.8417 7.2353 43 1 3.0184 -0.2024 8.1590 44 1 3.8637 2.1033 8.1637 45 1 4.9565 1.0683 7.2104 46 1 4.7220 0.9060 4.3898 47 1 3.4775 1.8362 3.5177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754329995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:20 Heat of formation + Delta-G solvation = -97.523397 kcal Electronic energy + Delta-G solvation = -28203.035554 eV Core-core repulsion = 24320.534229 eV Total energy + Delta-G solvation = -3882.501325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.73808 -37.76102 -36.86617 -36.27394 -36.01115 -34.10726 -32.95015 -31.49370 -30.27893 -28.16532 -27.54015 -26.21869 -25.67442 -23.28328 -21.92212 -20.93444 -20.10810 -19.81518 -18.89895 -17.09277 -16.82138 -16.60181 -16.33547 -15.82275 -15.55709 -15.40772 -15.10037 -14.58141 -14.40468 -13.93530 -13.81730 -13.43144 -13.23199 -13.11710 -12.98322 -12.62277 -12.32750 -12.17902 -12.11131 -12.01551 -11.98398 -11.65494 -11.58907 -11.54952 -11.40608 -11.07936 -10.97313 -10.91462 -10.89834 -10.66815 -10.45505 -10.33982 -10.20219 -10.08535 -9.93312 -9.30640 -8.62333 -8.45352 -6.86022 -5.80111 -3.23682 -0.01225 2.64678 3.07103 3.27366 3.31661 3.36145 3.61534 3.66185 3.81666 4.31434 4.33972 4.39045 4.53785 4.55026 4.69861 4.94578 5.05564 5.23122 5.27082 5.28870 5.34159 5.41291 5.50162 5.53661 5.58309 5.62966 5.64249 5.73016 5.80951 5.91180 6.00742 6.09026 6.11602 6.17560 6.43328 6.43636 6.73352 6.79332 7.10326 7.38162 7.58654 7.74855 8.08715 8.28544 8.72913 9.14288 9.78660 10.27589 11.24501 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003846 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.726081 B = 7277.640518 C = 8155.814318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.002 3.998 10 N -0.905 5.905 11 Si 0.901 3.099 12 H -0.290 1.290 13 H -0.285 1.285 14 H -0.283 1.283 15 N -0.694 5.694 16 C 0.511 3.489 17 O -0.557 6.557 18 C -0.135 4.135 19 C -0.057 4.057 20 H 0.099 0.901 21 C -0.139 4.139 22 C -0.107 4.107 23 C -0.610 4.610 24 S 2.415 3.585 25 O -0.936 6.936 26 O -0.949 6.949 27 C -0.599 4.599 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.027 0.973 34 H -0.005 1.005 35 H 0.046 0.954 36 H 0.253 0.747 37 H 0.403 0.597 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.130 0.870 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 0.122 15.725 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.323 5.323 6 C 0.021 3.979 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.731 3.269 12 H -0.216 1.216 13 H -0.212 1.212 14 H -0.210 1.210 15 N -0.344 5.344 16 C 0.297 3.703 17 O -0.437 6.437 18 C -0.176 4.176 19 C -0.077 4.077 20 H 0.117 0.883 21 C -0.177 4.177 22 C -0.146 4.146 23 C -0.738 4.738 24 S 2.598 3.402 25 O -0.933 6.933 26 O -0.946 6.946 27 C -0.729 4.729 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.239 0.761 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.396 1.871 15.623 17.386 hybrid contribution 1.092 -1.996 0.487 2.327 sum -6.304 -0.125 16.110 17.299 Atomic orbital electron populations 1.22117 0.96535 1.01352 1.01706 1.21872 0.92201 0.98335 0.86779 0.90477 1.21049 0.86014 0.98205 0.93405 1.43855 0.98900 1.21250 1.68295 1.20791 0.92938 0.86054 0.98131 1.18978 0.94790 1.04322 1.20012 0.91658 1.24938 0.98296 0.99042 0.97404 1.70079 1.11513 1.45329 1.28073 0.86405 0.79348 0.81122 0.80042 1.21619 1.21203 1.20976 1.45960 1.65176 1.14381 1.08917 1.20450 0.77572 0.87371 0.84907 1.90610 1.51581 1.16120 1.85419 1.21699 1.04095 0.98853 0.92923 1.20607 0.98972 0.94029 0.94090 0.88317 1.21828 1.03646 0.99451 0.92729 1.21245 0.97790 0.95570 0.99949 1.30297 1.08706 1.13741 1.21095 1.08090 0.75275 0.77766 0.79104 1.93579 1.38978 1.75075 1.85643 1.93583 1.53413 1.62144 1.85459 1.30399 1.07708 1.14603 1.20207 0.92157 0.92962 0.92828 0.93045 0.93094 0.95430 0.98618 0.93572 0.93641 0.76106 0.88590 0.88171 0.89482 0.90433 0.89695 0.89663 0.85216 0.85035 0.85194 0.82540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 2 C 0.12 1.97 2.88 -67.93 -0.20 1.77 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 4 C 0.14 2.65 5.30 -4.04 -0.02 2.62 16 5 N -0.60 -13.95 2.82 -181.12 -0.51 -14.46 16 6 C 0.17 4.00 8.96 59.84 0.54 4.54 16 7 C -0.25 -6.18 8.82 -15.06 -0.13 -6.32 16 8 H 0.07 1.48 6.34 -52.48 -0.33 1.15 16 9 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 10 N -0.90 -25.32 10.46 55.49 0.58 -24.74 16 11 Si 0.90 20.27 29.57 -169.99 -5.03 15.24 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 N -0.69 -11.33 4.49 -53.81 -0.24 -11.57 16 16 C 0.51 8.15 7.48 -10.99 -0.08 8.07 16 17 O -0.56 -10.49 13.60 5.56 0.08 -10.42 16 18 C -0.13 -1.56 5.16 -27.88 -0.14 -1.70 16 19 C -0.06 -0.60 1.67 -90.81 -0.15 -0.75 16 20 H 0.10 1.12 7.82 -51.93 -0.41 0.71 16 21 C -0.14 -0.99 4.93 -27.16 -0.13 -1.12 16 22 C -0.11 -0.71 5.73 -26.92 -0.15 -0.87 16 23 C -0.61 -4.44 6.35 37.18 0.24 -4.20 16 24 S 2.41 28.26 5.31 -107.50 -0.57 27.69 16 25 O -0.94 -14.14 17.93 -57.82 -1.04 -15.18 16 26 O -0.95 -14.57 18.11 -57.82 -1.05 -15.62 16 27 C -0.60 -7.09 5.39 37.17 0.20 -6.89 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 33 H 0.03 0.72 7.46 -51.93 -0.39 0.33 16 34 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 35 H 0.05 1.22 7.04 -51.93 -0.37 0.85 16 36 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.40 6.35 6.56 -40.82 -0.27 6.08 16 38 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.08 0.59 8.01 -51.93 -0.42 0.17 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.16 2.33 5.85 -51.93 -0.30 2.03 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.13 379.38 -9.74 -44.88 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.90 Total: 5.23 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.22 Total: -6.77 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.17 Total: -50.77 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.01 Total: -41.21 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: 28.26 SS G_CDS: -0.57 Total: 27.69 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.13 -9.74 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.648 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds