Wall clock time and date at job start Sat Apr 11 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47616 * 2 1 4 4 C 1.53004 * 109.46658 * 240.00560 * 2 1 3 5 5 N 1.46500 * 109.46862 * 184.99837 * 4 2 1 6 6 C 1.46493 * 120.00179 * 269.99598 * 5 4 2 7 7 C 1.36934 * 119.99874 * 90.00235 * 5 4 2 8 8 H 1.08003 * 120.00335 * 341.43200 * 7 5 4 9 9 C 1.38813 * 119.99971 * 161.43494 * 7 5 4 10 10 N 1.31616 * 120.00141 * 346.77861 * 9 7 5 11 11 Si 1.86803 * 120.00007 * 166.77217 * 9 7 5 12 12 H 1.48499 * 109.47230 * 180.02562 * 11 9 7 13 13 H 1.48505 * 109.47427 * 300.00379 * 11 9 7 14 14 H 1.48498 * 109.47175 * 60.00015 * 11 9 7 15 15 N 1.46496 * 109.47300 * 120.00825 * 2 1 3 16 16 C 1.34777 * 119.99542 * 274.99486 * 15 2 1 17 17 O 1.21279 * 120.00149 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99843 * 180.02562 * 16 15 2 19 19 C 1.53008 * 109.47249 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.38495 * 55.21035 * 19 18 16 21 21 C 1.52583 * 109.38579 * 174.99668 * 19 18 16 22 22 C 1.52584 * 110.64378 * 190.14563 * 21 19 18 23 23 C 1.53038 * 109.98470 * 290.01160 * 22 21 19 24 24 S 1.81680 * 108.99521 * 63.65060 * 23 22 21 25 25 O 1.42098 * 108.66506 * 60.02894 * 24 23 22 26 26 O 1.42100 * 108.66088 * 191.27431 * 24 23 22 27 27 C 1.53034 * 109.38365 * 295.52606 * 19 18 16 28 28 H 1.09000 * 109.47349 * 59.99294 * 1 2 3 29 29 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46911 * 299.99519 * 1 2 3 31 31 H 1.08999 * 109.47191 * 65.00343 * 4 2 1 32 32 H 1.08998 * 109.46949 * 304.99592 * 4 2 1 33 33 H 1.09000 * 109.47591 * 264.86529 * 6 5 4 34 34 H 1.09002 * 109.47462 * 24.86818 * 6 5 4 35 35 H 1.09000 * 109.47327 * 144.86571 * 6 5 4 36 36 H 0.97007 * 119.99768 * 180.02562 * 10 9 7 37 37 H 0.96996 * 120.00342 * 94.99763 * 15 2 1 38 38 H 1.09003 * 109.47013 * 299.99526 * 18 16 15 39 39 H 1.09001 * 109.47745 * 60.00040 * 18 16 15 40 40 H 1.09002 * 109.24910 * 310.44440 * 21 19 18 41 41 H 1.09001 * 109.24220 * 69.88187 * 21 19 18 42 42 H 1.08999 * 109.38819 * 50.16989 * 22 21 19 43 43 H 1.09003 * 109.38569 * 169.96067 * 22 21 19 44 44 H 1.09003 * 109.54943 * 183.50049 * 23 22 21 45 45 H 1.08991 * 109.55431 * 303.79469 * 23 22 21 46 46 H 1.09004 * 109.54423 * 296.04613 * 27 19 18 47 47 H 1.08997 * 109.55404 * 56.33706 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.4999 -0.8263 -1.1908 6 6 4.3341 0.2341 -1.7615 7 6 4.0848 -1.9158 -0.6027 8 1 3.5135 -2.5380 0.0703 9 6 5.4121 -2.2206 -0.8714 10 7 6.0319 -1.6349 -1.8739 11 14 6.3188 -3.4621 0.1899 12 1 7.7127 -3.6084 -0.3007 13 1 6.3370 -2.9901 1.5978 14 1 5.6274 -4.7743 0.1168 15 7 2.0183 -0.6908 1.1960 16 6 2.1471 -0.0185 2.3570 17 8 1.8583 1.1582 2.4117 18 6 2.6500 -0.7288 3.5872 19 6 2.7009 0.2541 4.7588 20 1 1.7192 0.7085 4.8927 21 6 3.0905 -0.4936 6.0305 22 6 2.9084 0.3976 7.2556 23 6 3.9606 1.5089 7.2552 24 16 3.6994 2.5700 5.8038 25 8 2.3964 3.1318 5.8797 26 8 4.8209 3.4311 5.6624 27 6 3.7282 1.3482 4.4596 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7515 -0.1581 -2.1370 32 1 1.6052 -1.7197 -1.2953 33 1 4.6179 -0.0347 -2.7790 34 1 3.7742 1.1692 -1.7754 35 1 5.2312 0.3569 -1.1546 36 1 6.9594 -1.8482 -2.0619 37 1 2.2490 -1.6319 1.1524 38 1 1.9777 -1.5511 3.8323 39 1 3.6493 -1.1207 3.3977 40 1 2.4628 -1.3787 6.1337 41 1 4.1344 -0.7997 5.9617 42 1 1.9131 0.8417 7.2353 43 1 3.0184 -0.2024 8.1590 44 1 3.8637 2.1033 8.1637 45 1 4.9565 1.0683 7.2104 46 1 4.7220 0.9060 4.3898 47 1 3.4775 1.8362 3.5177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754329995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:12:20 Heat of formation + Delta-G solvation = -123.712323 kcal Electronic energy + Delta-G solvation = -28204.171191 eV Core-core repulsion = 24320.534229 eV Total energy + Delta-G solvation = -3883.636962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93939 -38.73732 -38.05003 -37.56068 -37.05629 -35.70436 -33.76449 -33.13189 -31.75554 -29.09058 -28.27589 -28.06567 -27.36951 -24.18774 -23.41466 -22.02055 -21.30432 -21.03502 -19.81270 -18.76695 -17.78695 -17.68986 -17.47458 -17.00875 -16.92285 -16.64162 -16.15442 -15.77139 -15.52310 -15.37575 -14.94372 -14.62525 -14.58199 -14.33303 -13.90127 -13.69482 -13.60572 -13.51411 -13.19311 -13.12673 -13.08303 -13.05412 -12.78256 -12.59526 -12.56716 -12.31666 -12.24883 -12.20653 -12.16850 -12.04378 -11.84795 -11.76144 -11.64923 -11.45825 -11.03102 -10.55767 -10.52962 -9.80359 -8.77940 -7.75933 -5.21258 -0.89422 1.51057 1.53261 1.59734 1.79306 1.85662 2.48538 2.56129 2.76045 3.00299 3.38692 3.61130 3.65216 3.71537 3.79724 3.82619 3.96664 4.08709 4.19358 4.25481 4.42122 4.51223 4.53953 4.66251 4.70668 4.71159 4.75530 4.82667 4.83111 4.89216 4.94730 5.00610 5.06830 5.14341 5.19138 5.28383 5.31938 5.42862 5.44990 5.61734 5.71030 5.81399 6.33595 6.81922 7.17130 7.49606 7.90064 8.36674 9.28596 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003846 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.726081 B = 7277.640518 C = 8155.814318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.044 0.956 4 C 0.143 3.857 5 N -0.615 5.615 6 C 0.182 3.818 7 C -0.243 4.243 8 H 0.089 0.911 9 C -0.063 4.063 10 N -0.947 5.947 11 Si 0.964 3.036 12 H -0.310 1.310 13 H -0.269 1.269 14 H -0.271 1.271 15 N -0.697 5.697 16 C 0.500 3.500 17 O -0.593 6.593 18 C -0.130 4.130 19 C -0.058 4.058 20 H 0.082 0.918 21 C -0.136 4.136 22 C -0.112 4.112 23 C -0.575 4.575 24 S 2.404 3.596 25 O -0.983 6.983 26 O -0.998 6.998 27 C -0.603 4.603 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.003 0.997 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.243 0.757 37 H 0.407 0.593 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.149 0.851 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -2.845 18.803 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.062 0.938 4 C 0.016 3.984 5 N -0.337 5.337 6 C 0.037 3.963 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.257 4.257 10 N -0.595 5.595 11 Si 0.792 3.208 12 H -0.237 1.237 13 H -0.195 1.195 14 H -0.196 1.196 15 N -0.348 5.348 16 C 0.288 3.712 17 O -0.476 6.476 18 C -0.170 4.170 19 C -0.078 4.078 20 H 0.101 0.899 21 C -0.173 4.173 22 C -0.150 4.150 23 C -0.709 4.709 24 S 2.593 3.407 25 O -0.980 6.980 26 O -0.995 6.995 27 C -0.733 4.733 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.244 0.756 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.170 0.830 45 H 0.180 0.820 46 H 0.167 0.833 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.352 -1.073 18.683 20.493 hybrid contribution 1.287 -1.058 -0.475 1.732 sum -7.065 -2.131 18.208 19.647 Atomic orbital electron populations 1.21994 0.93894 1.02651 1.01932 1.21606 0.94128 0.96259 0.86512 0.93751 1.21215 0.83343 0.99309 0.94552 1.44092 1.00769 1.20698 1.68183 1.20460 0.92384 0.87362 0.96139 1.19500 0.94826 1.03819 1.19134 0.89317 1.25768 0.99564 1.01523 0.98812 1.70284 1.11093 1.47736 1.30344 0.85382 0.76975 0.79421 0.78988 1.23679 1.19456 1.19622 1.45998 1.65366 1.14495 1.08902 1.21335 0.76769 0.87129 0.85965 1.90610 1.52984 1.17926 1.86061 1.21799 1.04888 0.99519 0.90837 1.20701 0.97780 0.93552 0.95781 0.89924 1.21871 1.05304 0.99679 0.90437 1.21398 0.97028 0.95373 1.01199 1.30042 1.10895 1.12724 1.17200 1.08073 0.73532 0.78388 0.80696 1.93511 1.40716 1.77049 1.86728 1.93512 1.54298 1.64908 1.86784 1.30364 1.09338 1.15056 1.18548 0.90787 0.91026 0.93783 0.92221 0.91673 0.97892 0.96747 0.96614 0.94817 0.75600 0.85008 0.87505 0.87023 0.88571 0.90301 0.86174 0.83028 0.82005 0.83311 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.48 71.98 0.68 -3.18 16 2 C 0.12 4.10 2.88 44.99 0.13 4.23 16 3 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 4 C 0.14 5.16 5.30 86.38 0.46 5.61 16 5 N -0.61 -28.48 2.82 -726.95 -2.05 -30.53 16 6 C 0.18 9.08 8.96 127.77 1.15 10.22 16 7 C -0.24 -11.70 8.82 84.03 0.74 -10.96 16 8 H 0.09 3.78 6.34 -2.91 -0.02 3.76 16 9 C -0.06 -3.27 5.11 84.86 0.43 -2.83 16 10 N -0.95 -54.48 10.46 21.65 0.23 -54.26 16 11 Si 0.96 41.08 29.57 68.60 2.03 43.11 16 12 H -0.31 -14.08 7.11 99.48 0.71 -13.38 16 13 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 14 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 15 N -0.70 -21.92 4.49 -442.55 -1.99 -23.90 16 16 C 0.50 15.67 7.48 87.66 0.66 16.33 16 17 O -0.59 -23.15 13.60 -3.03 -0.04 -23.19 16 18 C -0.13 -2.68 5.16 29.85 0.15 -2.53 16 19 C -0.06 -1.11 1.67 -10.92 -0.02 -1.13 16 20 H 0.08 1.84 7.82 -2.39 -0.02 1.82 16 21 C -0.14 -1.29 4.93 30.32 0.15 -1.14 16 22 C -0.11 -0.97 5.73 30.47 0.17 -0.79 16 23 C -0.58 -6.23 6.35 71.99 0.46 -5.77 16 24 S 2.40 56.90 5.31 -56.49 -0.30 56.60 16 25 O -0.98 -31.21 17.93 -127.38 -2.28 -33.50 16 26 O -1.00 -31.92 18.11 -127.38 -2.31 -34.23 16 27 C -0.60 -14.30 5.39 71.99 0.39 -13.92 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.06 2.19 8.04 -2.39 -0.02 2.18 16 33 H 0.00 0.15 7.46 -2.39 -0.02 0.13 16 34 H 0.01 0.63 8.03 -2.39 -0.02 0.61 16 35 H 0.02 0.84 7.04 -2.39 -0.02 0.83 16 36 H 0.24 13.85 8.31 -92.70 -0.77 13.08 16 37 H 0.41 11.87 6.56 -92.71 -0.61 11.26 16 38 H 0.13 1.76 8.10 -2.39 -0.02 1.75 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.11 0.60 8.06 -2.39 -0.02 0.58 16 41 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 42 H 0.08 0.84 8.01 -2.39 -0.02 0.82 16 43 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 47 H 0.12 3.78 5.85 -2.39 -0.01 3.77 16 Total: -1.00 -81.55 379.38 -0.82 -82.36 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.35 Total: 23.39 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.55 Total: -5.86 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -3.81 Total: -108.69 kcal Atomic # 8 Polarization: -86.28 SS G_CDS: -4.63 Total: -90.91 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 56.90 SS G_CDS: -0.30 Total: 56.60 kcal Total: -81.55 -0.82 -82.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754329995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.348 kcal (2) G-P(sol) polarization free energy of solvation -81.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds