Wall clock time and date at job start Sat Apr 11 2020 03:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47478 * 2 1 4 4 C 1.37106 * 119.99937 * 264.76708 * 3 2 1 5 5 H 1.08002 * 119.99521 * 138.85027 * 4 3 2 6 6 C 1.38945 * 119.99888 * 318.85638 * 4 3 2 7 7 N 1.31409 * 120.00323 * 341.82149 * 6 4 3 8 8 Si 1.86800 * 120.00053 * 161.82673 * 6 4 3 9 9 H 1.48504 * 109.47129 * 89.99278 * 8 6 4 10 10 H 1.48499 * 109.47419 * 209.99511 * 8 6 4 11 11 H 1.48507 * 109.47137 * 329.99885 * 8 6 4 12 12 C 1.34776 * 120.00198 * 84.76594 * 3 2 1 13 13 O 1.21290 * 119.99833 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99805 * 0.02562 * 12 3 2 15 15 S 1.81399 * 109.46848 * 179.97438 * 14 12 3 16 16 O 1.42097 * 110.54221 * 68.37736 * 15 14 12 17 17 O 1.42100 * 110.54492 * 291.62125 * 15 14 12 18 18 N 1.65603 * 104.44649 * 179.97438 * 15 14 12 19 19 C 1.46506 * 120.00048 * 65.28230 * 18 15 14 20 20 C 1.52996 * 109.46507 * 264.72175 * 19 18 15 21 21 C 1.53001 * 109.47302 * 299.99501 * 20 19 18 22 22 C 1.52993 * 109.47154 * 300.00360 * 21 20 19 23 23 C 1.53001 * 109.47154 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.47285 * 60.00134 * 22 21 20 25 25 C 1.53001 * 109.47295 * 144.72100 * 19 18 15 26 26 H 1.08991 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47034 * 300.00304 * 1 2 3 28 28 H 1.09001 * 109.46696 * 59.99657 * 1 2 3 29 29 H 1.09006 * 109.47055 * 239.99714 * 2 1 3 30 30 H 1.09002 * 109.47143 * 120.00054 * 2 1 3 31 31 H 0.97003 * 120.00402 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47110 * 60.00026 * 14 12 3 33 33 H 1.08997 * 109.47284 * 299.99483 * 14 12 3 34 34 H 0.96997 * 120.00500 * 244.99816 * 18 15 14 35 35 H 1.09005 * 109.46878 * 24.71593 * 19 18 15 36 36 H 1.09001 * 109.47452 * 60.00304 * 20 19 18 37 37 H 1.09007 * 109.47119 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47093 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.46652 * 60.00447 * 21 20 19 40 40 H 1.09004 * 109.47412 * 299.99622 * 22 21 20 41 41 H 1.09007 * 109.46932 * 299.99650 * 23 22 21 42 42 H 1.09000 * 109.47525 * 59.99765 * 23 22 21 43 43 H 1.09001 * 109.47523 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47071 * 180.02562 * 24 22 21 45 45 H 1.08994 * 109.47381 * 59.99593 * 24 22 21 46 46 H 1.08997 * 109.46516 * 179.97438 * 25 19 18 47 47 H 1.08992 * 109.47303 * 299.99655 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0745 3.0218 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8451 8 14 3.0500 1.9002 -3.9239 9 1 4.2056 2.8117 -4.1214 10 1 3.1660 0.7459 -4.8509 11 1 1.7886 2.6331 -4.2014 12 6 2.1427 2.0520 1.1623 13 8 2.5475 3.1954 1.1623 14 6 1.7798 1.3811 2.4620 15 16 2.0548 2.5343 3.8350 16 8 1.1205 3.6036 3.7828 17 8 3.4433 2.7823 4.0075 18 7 1.6212 1.6796 5.1855 19 6 2.3925 0.4996 5.5847 20 6 1.7243 -0.7588 5.0272 21 6 0.3019 -0.8684 5.5800 22 6 0.3530 -0.9519 7.1068 23 6 -1.0694 -1.0622 7.6595 24 6 1.0212 0.3067 7.6642 25 6 2.4437 0.4163 7.1115 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.1593 -0.3124 -2.5281 32 1 2.4018 0.4969 2.6005 33 1 0.7305 1.0872 2.4386 34 1 0.8591 1.9624 5.7147 35 1 3.4059 0.5778 5.1908 36 1 1.6880 -0.6994 3.9394 37 1 2.2984 -1.6367 5.3238 38 1 -0.1743 -1.7648 5.1824 39 1 -0.2719 0.0095 5.2830 40 1 0.9269 -1.8298 7.4037 41 1 -1.6436 -0.1845 7.3626 42 1 -1.5450 -1.9589 7.2623 43 1 -1.0330 -1.1211 8.7473 44 1 1.0580 0.2470 8.7520 45 1 0.4474 1.1845 7.3673 46 1 3.0171 -0.4618 7.4084 47 1 2.9196 1.3127 7.5086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068306624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:39 Heat of formation + Delta-G solvation = -126.066269 kcal Electronic energy + Delta-G solvation = -28519.796916 eV Core-core repulsion = 24636.057879 eV Total energy + Delta-G solvation = -3883.739037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.50057 -38.73716 -36.64992 -35.51135 -35.22022 -34.55201 -32.30291 -31.09722 -30.63526 -29.69672 -29.51116 -26.27815 -24.88044 -22.89680 -22.45103 -21.53232 -20.27655 -19.58376 -18.62110 -17.71459 -16.93560 -16.35973 -15.91087 -15.75378 -15.41564 -15.12309 -14.87509 -14.55089 -14.31240 -14.06406 -14.03630 -13.72715 -13.40497 -13.08956 -12.91392 -12.45981 -12.36953 -12.20298 -11.99436 -11.91124 -11.85403 -11.64300 -11.56252 -11.54300 -11.41255 -11.24443 -11.17758 -11.07465 -10.77843 -10.62772 -10.52844 -10.44383 -10.37641 -10.26114 -10.23415 -9.45071 -9.04836 -8.83649 -7.60163 -6.44711 -4.13799 0.58223 3.09327 3.12013 3.21592 3.26686 3.60338 3.97681 4.18965 4.40625 4.46093 4.49766 4.61940 4.63018 4.85293 4.89347 4.92724 5.08220 5.18295 5.25474 5.26183 5.29160 5.34495 5.42453 5.47024 5.53507 5.59650 5.64117 5.78832 5.82853 5.83615 5.89700 5.92199 6.02044 6.06463 6.12299 6.15052 6.16925 6.27756 6.35328 6.73976 7.04178 7.06903 7.48676 8.09558 8.31210 8.98618 9.20121 9.76706 10.60527 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.003545 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.576428 B = 7895.729698 C = 8585.563300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.420 5.420 4 C -0.315 4.315 5 H 0.094 0.906 6 C 0.042 3.958 7 N -0.867 5.867 8 Si 0.923 3.077 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.479 3.521 13 O -0.578 6.578 14 C -0.655 4.655 15 S 2.643 3.357 16 O -0.954 6.954 17 O -0.947 6.947 18 N -1.120 6.120 19 C 0.145 3.855 20 C -0.147 4.147 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.050 0.950 31 H 0.270 0.730 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 -9.010 16.487 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.138 5.138 4 C -0.443 4.443 5 H 0.112 0.888 6 C -0.164 4.164 7 N -0.504 5.504 8 Si 0.749 3.251 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.265 3.735 13 O -0.463 6.463 14 C -0.785 4.785 15 S 2.733 3.267 16 O -0.944 6.944 17 O -0.937 6.937 18 N -0.879 5.879 19 C 0.037 3.963 20 C -0.186 4.186 21 C -0.152 4.152 22 C -0.111 4.111 23 C -0.206 4.206 24 C -0.154 4.154 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.248 0.752 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.774 -7.794 16.220 19.229 hybrid contribution -0.552 -0.691 -0.876 1.245 sum -7.327 -8.485 15.344 19.004 Atomic orbital electron populations 1.22230 0.97907 1.00609 1.01758 1.21545 0.91854 0.85256 1.03741 1.43324 1.54406 1.11738 1.04318 1.19497 1.35530 0.98983 0.90281 0.88839 1.25477 0.93664 0.96374 1.00867 1.69916 1.28813 1.17336 1.34340 0.86001 0.79239 0.78429 0.81479 1.20009 1.20709 1.19189 1.19060 0.83116 0.87752 0.83577 1.90663 1.51263 1.18153 1.86195 1.31063 1.11889 1.19136 1.16418 1.04106 0.74529 0.74176 0.73854 1.93542 1.64624 1.50210 1.85989 1.93548 1.32996 1.82850 1.84276 1.56013 1.44294 1.43116 1.44504 1.20846 0.94988 0.84212 0.96237 1.22211 0.97151 0.98109 1.01129 1.21555 0.96658 1.02206 0.94744 1.21157 0.96289 0.98253 0.95434 1.21841 0.96374 1.01787 1.00582 1.21601 0.95861 0.97927 0.99986 1.21747 0.97417 1.02883 0.93920 0.92782 0.93904 0.92062 0.87485 0.93149 0.91982 0.83693 0.83870 0.75208 0.88714 0.91072 0.90441 0.91797 0.91552 0.91168 0.92645 0.92760 0.92882 0.91797 0.91812 0.90622 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 10.15 37.16 0.38 -2.42 16 2 C 0.10 2.06 5.41 -4.04 -0.02 2.04 16 3 N -0.42 -10.52 2.50 -114.81 -0.29 -10.81 16 4 C -0.32 -8.67 8.84 -14.93 -0.13 -8.81 16 5 H 0.09 2.68 7.82 -52.49 -0.41 2.27 16 6 C 0.04 1.08 4.95 -17.47 -0.09 1.00 16 7 N -0.87 -22.86 11.61 55.50 0.64 -22.22 16 8 Si 0.92 20.30 29.59 -169.99 -5.03 15.27 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 12 C 0.48 11.85 7.61 -10.99 -0.08 11.77 16 13 O -0.58 -16.68 15.78 5.55 0.09 -16.59 16 14 C -0.65 -11.53 4.34 36.00 0.16 -11.37 16 15 S 2.64 47.40 4.58 -107.50 -0.49 46.91 16 16 O -0.95 -20.06 18.08 -57.55 -1.04 -21.10 16 17 O -0.95 -20.36 17.38 -57.55 -1.00 -21.36 16 18 N -1.12 -13.36 4.63 -4.89 -0.02 -13.38 16 19 C 0.14 1.46 3.03 -67.93 -0.21 1.26 16 20 C -0.15 -1.27 5.61 -26.73 -0.15 -1.42 16 21 C -0.11 -0.90 5.05 -26.73 -0.13 -1.03 16 22 C -0.09 -0.65 2.72 -90.62 -0.25 -0.89 16 23 C -0.15 -0.97 9.19 37.16 0.34 -0.62 16 24 C -0.12 -0.84 5.02 -26.73 -0.13 -0.98 16 25 C -0.12 -0.99 5.63 -26.73 -0.15 -1.14 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.66 6.60 -51.93 -0.34 0.32 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.11 2.43 5.76 -51.93 -0.30 2.13 16 30 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.15 2.15 6.06 -51.92 -0.31 1.84 16 33 H 0.14 2.04 6.54 -51.93 -0.34 1.70 16 34 H 0.41 4.15 6.78 -34.48 -0.23 3.91 16 35 H 0.09 1.04 7.47 -51.93 -0.39 0.66 16 36 H 0.07 0.65 5.82 -51.93 -0.30 0.35 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.48 6.50 -51.93 -0.34 0.14 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 374.33 15.07 5.64 5.64 Total: -1.00 -35.86 374.33 -9.46 -45.32 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.49 Total: 4.94 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.47 Total: -12.63 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.33 Total: -46.40 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -1.95 Total: -59.05 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 16 Polarization: 47.40 SS G_CDS: -0.49 Total: 46.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.86 -9.46 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068306624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.749 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds