Wall clock time and date at job start Sat Apr 11 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47478 * 2 1 4 4 C 1.37106 * 119.99937 * 264.76708 * 3 2 1 5 5 H 1.08002 * 119.99521 * 138.85027 * 4 3 2 6 6 C 1.38945 * 119.99888 * 318.85638 * 4 3 2 7 7 N 1.31409 * 120.00323 * 341.82149 * 6 4 3 8 8 Si 1.86800 * 120.00053 * 161.82673 * 6 4 3 9 9 H 1.48504 * 109.47129 * 89.99278 * 8 6 4 10 10 H 1.48499 * 109.47419 * 209.99511 * 8 6 4 11 11 H 1.48507 * 109.47137 * 329.99885 * 8 6 4 12 12 C 1.34776 * 120.00198 * 84.76594 * 3 2 1 13 13 O 1.21290 * 119.99833 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99805 * 0.02562 * 12 3 2 15 15 S 1.81399 * 109.46848 * 179.97438 * 14 12 3 16 16 O 1.42097 * 110.54221 * 68.37736 * 15 14 12 17 17 O 1.42100 * 110.54492 * 291.62125 * 15 14 12 18 18 N 1.65603 * 104.44649 * 179.97438 * 15 14 12 19 19 C 1.46506 * 120.00048 * 65.28230 * 18 15 14 20 20 C 1.52996 * 109.46507 * 264.72175 * 19 18 15 21 21 C 1.53001 * 109.47302 * 299.99501 * 20 19 18 22 22 C 1.52993 * 109.47154 * 300.00360 * 21 20 19 23 23 C 1.53001 * 109.47154 * 180.02562 * 22 21 20 24 24 C 1.53003 * 109.47285 * 60.00134 * 22 21 20 25 25 C 1.53001 * 109.47295 * 144.72100 * 19 18 15 26 26 H 1.08991 * 109.47387 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47034 * 300.00304 * 1 2 3 28 28 H 1.09001 * 109.46696 * 59.99657 * 1 2 3 29 29 H 1.09006 * 109.47055 * 239.99714 * 2 1 3 30 30 H 1.09002 * 109.47143 * 120.00054 * 2 1 3 31 31 H 0.97003 * 120.00402 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47110 * 60.00026 * 14 12 3 33 33 H 1.08997 * 109.47284 * 299.99483 * 14 12 3 34 34 H 0.96997 * 120.00500 * 244.99816 * 18 15 14 35 35 H 1.09005 * 109.46878 * 24.71593 * 19 18 15 36 36 H 1.09001 * 109.47452 * 60.00304 * 20 19 18 37 37 H 1.09007 * 109.47119 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47093 * 179.97438 * 21 20 19 39 39 H 1.09004 * 109.46652 * 60.00447 * 21 20 19 40 40 H 1.09004 * 109.47412 * 299.99622 * 22 21 20 41 41 H 1.09007 * 109.46932 * 299.99650 * 23 22 21 42 42 H 1.09000 * 109.47525 * 59.99765 * 23 22 21 43 43 H 1.09001 * 109.47523 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47071 * 180.02562 * 24 22 21 45 45 H 1.08994 * 109.47381 * 59.99593 * 24 22 21 46 46 H 1.08997 * 109.46516 * 179.97438 * 25 19 18 47 47 H 1.08992 * 109.47303 * 299.99655 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0745 3.0218 -1.3535 6 6 3.0372 1.2840 -2.1605 7 7 3.6792 0.1817 -1.8451 8 14 3.0500 1.9002 -3.9239 9 1 4.2056 2.8117 -4.1214 10 1 3.1660 0.7459 -4.8509 11 1 1.7886 2.6331 -4.2014 12 6 2.1427 2.0520 1.1623 13 8 2.5475 3.1954 1.1623 14 6 1.7798 1.3811 2.4620 15 16 2.0548 2.5343 3.8350 16 8 1.1205 3.6036 3.7828 17 8 3.4433 2.7823 4.0075 18 7 1.6212 1.6796 5.1855 19 6 2.3925 0.4996 5.5847 20 6 1.7243 -0.7588 5.0272 21 6 0.3019 -0.8684 5.5800 22 6 0.3530 -0.9519 7.1068 23 6 -1.0694 -1.0622 7.6595 24 6 1.0212 0.3067 7.6642 25 6 2.4437 0.4163 7.1115 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.1593 -0.3124 -2.5281 32 1 2.4018 0.4969 2.6005 33 1 0.7305 1.0872 2.4386 34 1 0.8591 1.9624 5.7147 35 1 3.4059 0.5778 5.1908 36 1 1.6880 -0.6994 3.9394 37 1 2.2984 -1.6367 5.3238 38 1 -0.1743 -1.7648 5.1824 39 1 -0.2719 0.0095 5.2830 40 1 0.9269 -1.8298 7.4037 41 1 -1.6436 -0.1845 7.3626 42 1 -1.5450 -1.9589 7.2623 43 1 -1.0330 -1.1211 8.7473 44 1 1.0580 0.2470 8.7520 45 1 0.4474 1.1845 7.3673 46 1 3.0171 -0.4618 7.4084 47 1 2.9196 1.3127 7.5086 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068306624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:38 Heat of formation + Delta-G solvation = -152.237815 kcal Electronic energy + Delta-G solvation = -28520.931799 eV Core-core repulsion = 24636.057879 eV Total energy + Delta-G solvation = -3884.873920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61854 -40.19124 -38.20138 -37.19677 -36.98594 -35.35420 -34.21886 -31.84551 -31.43884 -31.30586 -31.02583 -26.90470 -26.81764 -24.07839 -23.48696 -22.20294 -21.68179 -20.82327 -19.78531 -19.17830 -18.73932 -17.79837 -17.34563 -17.26629 -17.03006 -16.36807 -15.96862 -15.85494 -15.70384 -15.17842 -14.91971 -14.69070 -14.59890 -14.36215 -14.12812 -14.01122 -13.63354 -13.38166 -13.24718 -13.18151 -13.07330 -12.92724 -12.90819 -12.79032 -12.71938 -12.43123 -12.41030 -12.14351 -12.10564 -12.01702 -11.98418 -11.86043 -11.30545 -11.12579 -10.96650 -10.91207 -10.80761 -10.31018 -9.54327 -8.43420 -6.21186 -0.84684 1.33932 1.39939 1.52331 1.77756 1.83372 2.23276 2.62410 2.91814 2.99740 3.18917 3.63523 3.77205 3.86140 3.87149 3.96931 4.12650 4.22197 4.28512 4.38723 4.40604 4.57880 4.59590 4.65701 4.69324 4.76644 4.80445 4.86638 4.99228 4.99485 5.08676 5.22656 5.24006 5.26717 5.27077 5.34228 5.39970 5.44193 5.50741 5.51072 5.55417 5.70742 6.12093 6.13457 6.35175 7.01302 7.26757 7.83039 8.60578 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019153 B = 0.003545 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.576428 B = 7895.729698 C = 8585.563300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 N -0.430 5.430 4 C -0.354 4.354 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.883 5.883 8 Si 0.983 3.017 9 H -0.280 1.280 10 H -0.262 1.262 11 H -0.265 1.265 12 C 0.457 3.543 13 O -0.635 6.635 14 C -0.641 4.641 15 S 2.654 3.346 16 O -0.992 6.992 17 O -0.990 6.990 18 N -1.095 6.095 19 C 0.134 3.866 20 C -0.147 4.147 21 C -0.116 4.116 22 C -0.090 4.090 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.277 0.723 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.424 0.576 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.094 0.906 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 -11.765 17.437 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 N -0.147 5.147 4 C -0.482 4.482 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.519 5.519 8 Si 0.806 3.194 9 H -0.206 1.206 10 H -0.186 1.186 11 H -0.190 1.190 12 C 0.245 3.755 13 O -0.525 6.525 14 C -0.772 4.772 15 S 2.745 3.255 16 O -0.982 6.982 17 O -0.980 6.980 18 N -0.860 5.860 19 C 0.027 3.973 20 C -0.186 4.186 21 C -0.154 4.154 22 C -0.108 4.108 23 C -0.205 4.205 24 C -0.154 4.154 25 C -0.157 4.157 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.194 0.806 33 H 0.200 0.800 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.943 -10.588 17.179 21.687 hybrid contribution -0.167 0.092 -1.106 1.122 sum -8.110 -10.496 16.074 20.840 Atomic orbital electron populations 1.22158 0.94835 1.03075 1.01613 1.21763 0.94402 0.82750 1.03968 1.43642 1.54012 1.13191 1.03842 1.19469 1.37659 0.98638 0.92467 0.91707 1.26181 0.92678 0.96408 1.04050 1.69960 1.28524 1.17775 1.35656 0.85108 0.78861 0.78362 0.77049 1.20562 1.18629 1.18974 1.19984 0.82468 0.87409 0.85660 1.90618 1.53624 1.20753 1.87461 1.30932 1.14843 1.19252 1.12134 1.03404 0.73224 0.74238 0.74646 1.93481 1.65134 1.52754 1.86829 1.93493 1.35442 1.83904 1.85140 1.55478 1.44836 1.43433 1.42229 1.21164 0.94396 0.83871 0.97860 1.22239 0.97836 0.97624 1.00931 1.21593 0.95971 1.02447 0.95369 1.21137 0.96603 0.98250 0.94820 1.21832 0.96030 1.01735 1.00937 1.21621 0.95069 0.98037 1.00672 1.21761 0.98399 1.03440 0.92137 0.88902 0.92389 0.93948 0.89711 0.90398 0.91286 0.80627 0.80048 0.73714 0.89793 0.91307 0.88650 0.90917 0.92020 0.90360 0.93076 0.92462 0.92384 0.90739 0.92276 0.88749 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 10.15 71.98 0.73 -4.20 16 2 C 0.09 3.73 5.41 86.38 0.47 4.19 16 3 N -0.43 -21.77 2.50 -635.54 -1.59 -23.37 16 4 C -0.35 -20.14 8.84 84.04 0.74 -19.40 16 5 H 0.07 3.95 7.82 -2.91 -0.02 3.93 16 6 C 0.01 0.57 4.95 84.93 0.42 0.99 16 7 N -0.88 -46.41 11.61 21.66 0.25 -46.16 16 8 Si 0.98 41.88 29.59 68.60 2.03 43.91 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 C 0.46 22.98 7.61 87.66 0.67 23.65 16 13 O -0.64 -38.41 15.78 -3.06 -0.05 -38.46 16 14 C -0.64 -21.81 4.34 71.24 0.31 -21.50 16 15 S 2.65 95.48 4.58 -56.49 -0.26 95.22 16 16 O -0.99 -42.60 18.08 -127.64 -2.31 -44.91 16 17 O -0.99 -43.72 17.38 -127.64 -2.22 -45.94 16 18 N -1.10 -24.69 4.63 -169.38 -0.78 -25.48 16 19 C 0.13 2.43 3.03 44.99 0.14 2.57 16 20 C -0.15 -2.07 5.61 30.59 0.17 -1.90 16 21 C -0.12 -1.44 5.05 30.59 0.15 -1.28 16 22 C -0.09 -0.96 2.72 -10.79 -0.03 -0.99 16 23 C -0.15 -1.51 9.19 71.98 0.66 -0.85 16 24 C -0.12 -1.37 5.02 30.60 0.15 -1.22 16 25 C -0.12 -1.65 5.63 30.60 0.17 -1.48 16 26 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 1.61 6.60 -2.39 -0.02 1.59 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.08 3.77 5.76 -2.38 -0.01 3.76 16 30 H 0.08 2.60 6.66 -2.39 -0.02 2.58 16 31 H 0.28 13.51 8.31 -92.71 -0.77 12.74 16 32 H 0.18 4.81 6.06 -2.39 -0.01 4.79 16 33 H 0.18 4.65 6.54 -2.39 -0.02 4.63 16 34 H 0.42 7.89 6.78 -96.74 -0.66 7.24 16 35 H 0.08 1.74 7.47 -2.38 -0.02 1.73 16 36 H 0.07 1.00 5.82 -2.39 -0.01 0.98 16 37 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 0.82 7.45 -2.39 -0.02 0.80 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.75 6.50 -2.39 -0.02 0.73 16 46 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.18 374.33 0.15 -82.03 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.32 Total: 24.56 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.76 Total: -21.42 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -2.12 Total: -95.00 kcal Atomic # 8 Polarization: -124.73 SS G_CDS: -4.57 Total: -129.30 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 95.48 SS G_CDS: -0.26 Total: 95.22 kcal Total: -82.18 0.15 -82.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068306624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.205 kcal (2) G-P(sol) polarization free energy of solvation -82.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds