Wall clock time and date at job start Sat Apr 11 2020 03:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47558 * 2 1 4 4 C 1.46501 * 120.00059 * 275.00502 * 3 2 1 5 5 C 1.53000 * 109.46971 * 274.99674 * 4 3 2 6 6 S 1.65603 * 120.00127 * 94.99730 * 3 2 1 7 7 O 1.42107 * 104.27330 * 333.93287 * 6 3 2 8 8 O 1.42089 * 104.27936 * 206.07623 * 6 3 2 9 9 C 1.81402 * 104.44454 * 90.00191 * 6 3 2 10 10 C 1.50704 * 109.46760 * 180.02562 * 9 6 3 11 11 O 1.21292 * 120.00152 * 353.19641 * 10 9 6 12 12 N 1.34774 * 120.00102 * 173.19706 * 10 9 6 13 13 C 1.37097 * 119.99748 * 356.29439 * 12 10 9 14 14 H 1.08003 * 120.00364 * 232.05324 * 13 12 10 15 15 C 1.38959 * 120.00275 * 52.04820 * 13 12 10 16 16 N 1.31405 * 119.99680 * 26.89556 * 15 13 12 17 17 Si 1.86798 * 120.00152 * 206.89289 * 15 13 12 18 18 H 1.48503 * 109.46862 * 59.99989 * 17 15 13 19 19 H 1.48493 * 109.47153 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47358 * 300.00212 * 17 15 13 21 21 C 1.46501 * 120.00306 * 176.01431 * 12 10 9 22 22 C 1.54262 * 110.03310 * 237.90891 * 21 12 10 23 23 C 1.54962 * 104.16178 * 217.13537 * 22 21 12 24 24 C 1.54895 * 102.77535 * 37.88699 * 23 22 21 25 25 C 1.53870 * 110.02842 * 120.69191 * 21 12 10 26 26 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46855 * 300.00211 * 1 2 3 28 28 H 1.08998 * 109.47064 * 59.99944 * 1 2 3 29 29 H 1.09002 * 109.46973 * 240.00318 * 2 1 3 30 30 H 1.08999 * 109.47377 * 120.00502 * 2 1 3 31 31 H 1.09001 * 109.47236 * 34.99396 * 4 3 2 32 32 H 1.09003 * 109.47238 * 154.99817 * 4 3 2 33 33 H 1.09003 * 109.47023 * 60.00011 * 5 4 3 34 34 H 1.08998 * 109.47128 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.46914 * 299.99919 * 5 4 3 36 36 H 1.08996 * 109.47155 * 60.00487 * 9 6 3 37 37 H 1.08998 * 109.47382 * 299.99828 * 9 6 3 38 38 H 0.97001 * 120.00189 * 184.85872 * 16 15 13 39 39 H 1.08998 * 110.01205 * 359.30232 * 21 12 10 40 40 H 1.09001 * 110.48984 * 335.78209 * 22 21 12 41 41 H 1.09000 * 110.48608 * 98.42515 * 22 21 12 42 42 H 1.08998 * 110.72020 * 279.57871 * 23 22 21 43 43 H 1.08996 * 110.92514 * 156.29948 * 23 22 21 44 44 H 1.08999 * 110.48770 * 203.40474 * 24 23 22 45 45 H 1.09000 * 110.59112 * 80.82052 * 24 23 22 46 46 H 1.09003 * 110.03085 * 238.57024 * 25 21 12 47 47 H 1.08995 * 110.03895 * 0.02562 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1584 2.1087 -1.2639 5 6 3.5152 1.7839 -1.8918 6 16 2.4123 2.1202 1.4287 7 8 1.6209 1.4495 2.3999 8 8 2.2335 3.5054 1.1677 9 6 4.1698 1.7387 1.6660 10 6 4.6507 2.3643 2.9500 11 8 3.9208 3.1052 3.5742 12 7 5.8916 2.1006 3.4048 13 6 6.6890 1.2046 2.7406 14 1 7.1530 0.3917 3.2794 15 6 6.9002 1.3423 1.3741 16 7 6.8181 2.5276 0.8128 17 14 7.3010 -0.1574 0.3351 18 1 6.1883 -1.1364 0.4293 19 1 7.4788 0.2543 -1.0805 20 1 8.5536 -0.7825 0.8305 21 6 6.3908 2.7758 4.6052 22 6 7.6859 3.5472 4.2777 23 6 8.5621 3.3720 5.5437 24 6 8.2615 1.9132 5.9691 25 6 6.7564 1.7375 5.6803 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1803 -1.0756 33 1 3.5813 0.7123 -2.0801 34 1 3.6195 2.3255 -2.8319 35 1 4.3118 2.0828 -1.2104 36 1 4.7443 2.1373 0.8299 37 1 4.3035 0.6581 1.7165 38 1 6.8955 2.6147 -0.1502 39 1 5.6351 3.4609 4.9893 40 1 8.1799 3.1120 3.4089 41 1 7.4689 4.6015 4.1059 42 1 8.2588 4.0716 6.3225 43 1 9.6187 3.4952 5.3060 44 1 8.4649 1.7759 7.0311 45 1 8.8483 1.2122 5.3754 46 1 6.1787 1.9193 6.5867 47 1 6.5628 0.7312 5.3089 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074680245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:47 Heat of formation + Delta-G solvation = -111.623300 kcal Electronic energy + Delta-G solvation = -29253.258054 eV Core-core repulsion = 25370.145312 eV Total energy + Delta-G solvation = -3883.112743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.17321 -37.01492 -36.82099 -36.53620 -35.24368 -34.40016 -31.86065 -31.70736 -29.38759 -28.61166 -28.01451 -26.83547 -24.85125 -23.58426 -22.00014 -20.33574 -20.03456 -19.47719 -18.27515 -17.47407 -16.66139 -16.25817 -16.08928 -15.45130 -15.31679 -14.86471 -14.50458 -14.43275 -13.91566 -13.89091 -13.68589 -13.44849 -13.25095 -12.77272 -12.70379 -12.55501 -12.13008 -11.97511 -11.73324 -11.65755 -11.49424 -11.45664 -11.41373 -11.35725 -11.17109 -11.00940 -10.80863 -10.75846 -10.57702 -10.55715 -10.54133 -10.41492 -10.20740 -10.03672 -9.75869 -9.13427 -8.78191 -8.73931 -7.57497 -6.62884 -4.42655 0.81894 2.95088 3.05479 3.06846 3.18063 3.70404 3.91343 4.30571 4.58161 4.62980 4.77282 4.86291 5.21556 5.26174 5.29562 5.30087 5.42065 5.46301 5.48542 5.50235 5.63948 5.72313 5.83500 5.88678 5.94525 6.02735 6.04066 6.18512 6.24049 6.26212 6.28125 6.33771 6.34623 6.37814 6.44958 6.48707 6.55883 6.66515 6.83974 6.84895 7.02214 7.19473 7.27293 7.77874 8.38617 8.65165 9.24074 9.72517 10.38273 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.005150 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.613978 B = 5435.767391 C = 6390.047277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -1.007 6.007 4 C 0.111 3.889 5 C -0.181 4.181 6 S 2.627 3.373 7 O -0.958 6.958 8 O -0.952 6.952 9 C -0.634 4.634 10 C 0.532 3.468 11 O -0.609 6.609 12 N -0.427 5.427 13 C -0.340 4.340 14 H 0.089 0.911 15 C 0.056 3.944 16 N -0.842 5.842 17 Si 0.889 3.111 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.268 1.268 21 C 0.129 3.871 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.169 0.831 37 H 0.143 0.857 38 H 0.273 0.727 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 -5.182 -3.911 6.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.844 5.844 4 C -0.014 4.014 5 C -0.240 4.240 6 S 2.721 3.279 7 O -0.948 6.948 8 O -0.942 6.942 9 C -0.765 4.765 10 C 0.320 3.680 11 O -0.496 6.496 12 N -0.145 5.145 13 C -0.467 4.467 14 H 0.107 0.893 15 C -0.152 4.152 16 N -0.477 5.477 17 Si 0.714 3.286 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.193 1.193 21 C 0.025 3.975 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.154 4.154 25 C -0.166 4.166 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.106 -4.223 -3.234 6.159 hybrid contribution 1.128 -1.117 -1.116 1.940 sum -1.978 -5.340 -4.349 7.165 Atomic orbital electron populations 1.22199 0.96085 1.02011 1.02719 1.21169 0.94621 0.81808 1.02914 1.57897 1.80142 1.23635 1.22748 1.21309 0.97506 0.97596 0.84987 1.22331 0.97964 1.02151 1.01543 1.04587 0.77191 0.73914 0.72243 1.93504 1.66239 1.75933 1.59128 1.93497 1.85437 1.31546 1.83706 1.30927 1.24976 1.12136 1.08462 1.18858 0.82593 0.82308 0.84268 1.90650 1.56074 1.42398 1.60518 1.43286 1.10177 1.37524 1.23496 1.19212 1.30320 1.06086 0.91094 0.89339 1.25533 0.94686 0.96328 0.98682 1.70161 1.43956 1.21483 1.12114 0.86598 0.80006 0.82739 0.79286 1.19191 1.20421 1.19252 1.21726 0.95830 0.93464 0.86493 1.22604 0.95622 0.99341 0.98369 1.22452 0.99222 0.96434 0.97939 1.22260 0.96584 0.97027 0.99530 1.22407 0.95544 1.00677 0.97985 0.91793 0.91585 0.92584 0.90709 0.90139 0.90437 0.88815 0.92273 0.91375 0.91900 0.81455 0.83933 0.91660 0.89934 0.88870 0.92830 0.92438 0.92317 0.92838 0.91672 0.92574 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 37.16 0.38 -1.66 16 2 C 0.12 1.57 5.98 -4.04 -0.02 1.54 16 3 N -1.01 -15.85 2.71 -114.38 -0.31 -16.16 16 4 C 0.11 1.50 6.38 -4.04 -0.03 1.48 16 5 C -0.18 -2.32 10.24 37.16 0.38 -1.94 16 6 S 2.63 55.05 4.55 -107.50 -0.49 54.56 16 7 O -0.96 -21.78 16.75 -57.54 -0.96 -22.74 16 8 O -0.95 -22.61 16.45 -58.22 -0.96 -23.57 16 9 C -0.63 -13.84 4.81 36.01 0.17 -13.67 16 10 C 0.53 13.54 7.28 -10.98 -0.08 13.46 16 11 O -0.61 -16.96 15.18 5.55 0.08 -16.88 16 12 N -0.43 -10.25 2.37 -106.54 -0.25 -10.50 16 13 C -0.34 -7.89 6.79 -14.93 -0.10 -7.99 16 14 H 0.09 2.00 7.29 -52.48 -0.38 1.62 16 15 C 0.06 1.26 3.34 -17.47 -0.06 1.20 16 16 N -0.84 -20.13 11.57 55.50 0.64 -19.49 16 17 Si 0.89 17.32 29.63 -169.99 -5.04 12.29 16 18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 19 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 C 0.13 2.79 3.29 -66.82 -0.22 2.57 16 22 C -0.12 -2.42 6.42 -25.03 -0.16 -2.58 16 23 C -0.12 -1.96 6.91 -24.70 -0.17 -2.13 16 24 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 25 C -0.13 -2.34 6.26 -25.62 -0.16 -2.50 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.08 1.06 7.61 -51.93 -0.40 0.67 16 31 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.09 1.38 6.82 -51.93 -0.35 1.03 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.94 6.96 -51.93 -0.36 0.58 16 36 H 0.17 3.67 4.30 -51.93 -0.22 3.45 16 37 H 0.14 2.81 7.73 -51.93 -0.40 2.41 16 38 H 0.27 6.12 8.32 -40.82 -0.34 5.78 16 39 H 0.08 1.91 6.95 -51.93 -0.36 1.55 16 40 H 0.09 2.09 7.02 -51.93 -0.36 1.73 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -30.86 380.77 -9.60 -40.46 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.82 Total: 10.51 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -0.24 Total: -14.22 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.08 Total: -46.15 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -1.84 Total: -63.19 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.04 Total: 12.29 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.49 Total: 54.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.86 -9.60 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074680245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.162 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds