Wall clock time and date at job start Sat Apr 11 2020 03:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.47395 * 2 1 4 4 C 1.46896 * 110.99866 * 70.63940 * 3 2 1 5 5 C 1.52999 * 109.47254 * 62.84474 * 4 3 2 6 6 C 1.50697 * 109.47292 * 174.76861 * 5 4 3 7 7 O 1.21289 * 119.99665 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00445 * 180.02562 * 6 5 4 9 9 C 1.46504 * 119.99504 * 359.97438 * 8 6 5 10 10 C 1.46494 * 120.00487 * 179.97438 * 8 6 5 11 11 C 1.50700 * 109.47339 * 89.99921 * 10 8 6 12 12 H 1.07999 * 119.99555 * 359.97438 * 11 10 8 13 13 C 1.37873 * 120.00088 * 180.02562 * 11 10 8 14 14 N 1.31517 * 120.00280 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46936 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46938 * 119.99813 * 15 13 11 18 18 H 1.48491 * 109.47499 * 239.99841 * 15 13 11 19 19 C 1.46896 * 111.00041 * 194.59409 * 3 2 1 20 20 H 1.09001 * 110.01398 * 294.66665 * 19 3 2 21 21 C 1.53875 * 110.02733 * 56.04826 * 19 3 2 22 22 C 1.54165 * 108.70657 * 166.47036 * 21 19 3 23 23 S 1.82918 * 105.08472 * 332.09006 * 22 21 19 24 24 O 1.42105 * 109.35323 * 115.52090 * 23 22 21 25 25 O 1.42102 * 109.35344 * 248.72587 * 23 22 21 26 26 C 1.55051 * 110.02802 * 173.23460 * 19 3 2 27 27 H 1.09001 * 109.47335 * 176.88486 * 1 2 3 28 28 H 1.09005 * 109.46833 * 296.88470 * 1 2 3 29 29 H 1.08995 * 109.47091 * 56.88493 * 1 2 3 30 30 H 1.09003 * 109.47397 * 240.00155 * 2 1 3 31 31 H 1.08997 * 109.47530 * 119.99933 * 2 1 3 32 32 H 1.08999 * 109.47004 * 182.84884 * 4 3 2 33 33 H 1.09001 * 109.47343 * 302.84609 * 4 3 2 34 34 H 1.09006 * 109.47124 * 294.76542 * 5 4 3 35 35 H 1.08995 * 109.47119 * 54.76717 * 5 4 3 36 36 H 1.09002 * 109.47228 * 90.00313 * 9 8 6 37 37 H 1.09001 * 109.46829 * 209.99839 * 9 8 6 38 38 H 1.09002 * 109.46925 * 329.99894 * 9 8 6 39 39 H 1.08997 * 109.47226 * 210.00242 * 10 8 6 40 40 H 1.08998 * 109.47095 * 329.99679 * 10 8 6 41 41 H 0.96992 * 120.00479 * 180.02562 * 14 13 11 42 42 H 1.09007 * 109.64892 * 286.32214 * 21 19 3 43 43 H 1.08997 * 109.65040 * 46.74426 * 21 19 3 44 44 H 1.09008 * 110.31997 * 90.98818 * 22 21 19 45 45 H 1.08997 * 110.31995 * 213.08485 * 22 21 19 46 46 H 1.09003 * 110.78716 * 316.54786 * 26 19 3 47 47 H 1.09001 * 110.78463 * 80.00124 * 26 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7666 2.0329 1.2939 5 6 2.5417 1.3007 2.3912 6 6 2.3855 2.0399 3.6951 7 8 1.7201 3.0529 3.7420 8 7 2.9860 1.5759 4.8089 9 6 3.7902 0.3526 4.7520 10 6 2.8347 2.2947 6.0764 11 6 1.6288 1.7687 6.8114 12 1 1.0344 0.9783 6.3775 13 6 1.2838 2.2972 8.0372 14 7 2.0074 3.2601 8.5653 15 14 -0.2113 1.6457 8.9479 16 1 -0.8497 0.5709 8.1462 17 1 0.2096 1.0983 10.2626 18 1 -1.1821 2.7493 9.1591 19 6 3.4465 1.4389 -0.3455 20 1 4.0366 0.9488 0.4288 21 6 3.6861 0.7550 -1.7029 22 6 5.1003 1.1188 -2.1971 23 16 5.4591 2.7511 -1.4535 24 8 6.5485 2.6275 -0.5494 25 8 5.4937 3.7371 -2.4762 26 6 3.8987 2.9133 -0.5059 27 1 -0.3634 -1.0261 -0.0558 28 1 -0.3633 0.4647 0.9166 29 1 -0.3633 0.5614 -0.8607 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0930 3.0719 1.2499 33 1 0.7001 1.9962 1.5161 34 1 2.1513 0.2886 2.4982 35 1 3.5972 1.2565 2.1227 36 1 4.8243 0.6080 4.5208 37 1 3.7481 -0.1549 5.7158 38 1 3.3964 -0.3054 3.9774 39 1 3.7255 2.1465 6.6868 40 1 2.7035 3.3583 5.8774 41 1 1.7650 3.6317 9.4278 42 1 3.6049 -0.3260 -1.5881 43 1 2.9470 1.1032 -2.4244 44 1 5.8235 0.3791 -1.8533 45 1 5.1158 1.1851 -3.2849 46 1 3.1613 3.4850 -1.0696 47 1 4.0823 3.3696 0.4668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092802609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:04 Heat of formation + Delta-G solvation = -94.462893 kcal Electronic energy + Delta-G solvation = -27713.646120 eV Core-core repulsion = 23831.277509 eV Total energy + Delta-G solvation = -3882.368612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.87656 -38.54003 -37.30888 -36.29574 -35.12463 -34.78670 -32.69481 -31.85846 -30.40089 -28.70789 -27.72193 -26.11340 -25.41710 -23.70510 -22.71148 -22.12113 -19.93002 -19.11607 -18.40851 -17.45915 -17.25699 -16.61429 -16.51390 -15.96133 -15.63485 -15.35686 -15.14970 -15.01443 -14.70932 -14.44374 -14.23805 -14.12127 -13.26691 -13.06153 -12.94141 -12.58530 -12.45682 -12.35605 -12.33654 -12.28116 -12.23578 -12.11346 -11.90370 -11.88883 -11.74961 -11.56369 -11.27815 -11.22385 -10.94277 -10.82828 -10.63187 -10.62079 -10.55361 -10.19416 -9.64804 -9.00254 -8.60862 -8.46742 -7.69204 -6.07394 -4.12493 -0.28257 2.18821 3.25873 3.27039 3.32043 3.35573 3.39776 3.41482 3.71632 3.93070 3.99171 4.17036 4.32382 4.41791 4.44661 4.51530 4.75643 4.97019 5.02498 5.07653 5.09751 5.14343 5.16512 5.23354 5.27334 5.32746 5.42373 5.43757 5.50207 5.61394 5.70022 5.79904 5.84116 5.90646 6.02651 6.14838 6.25705 6.71589 6.77846 7.01551 7.40750 7.49287 7.88601 8.19801 8.36467 8.86164 9.03742 9.52765 11.00743 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017200 B = 0.002897 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.480689 B = 9661.906166 C =10567.601065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.035 3.965 3 N -0.517 5.517 4 C 0.065 3.935 5 C -0.183 4.183 6 C 0.507 3.493 7 O -0.541 6.541 8 N -0.602 5.602 9 C 0.083 3.917 10 C 0.244 3.756 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.077 3.923 20 H 0.072 0.928 21 C -0.111 4.111 22 C -0.593 4.593 23 S 2.389 3.611 24 O -0.935 6.935 25 O -0.938 6.938 26 C -0.582 4.582 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.150 0.850 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.344 -9.616 -22.936 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 N -0.241 5.241 4 C -0.062 4.062 5 C -0.225 4.225 6 C 0.292 3.708 7 O -0.419 6.419 8 N -0.334 5.334 9 C -0.061 4.061 10 C 0.125 3.875 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.726 3.274 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.033 4.033 20 H 0.090 0.910 21 C -0.149 4.149 22 C -0.722 4.722 23 S 2.572 3.428 24 O -0.932 6.932 25 O -0.935 6.935 26 C -0.712 4.712 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.169 0.831 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.551 -8.098 -23.190 24.981 hybrid contribution -0.946 -1.478 1.457 2.281 sum 3.604 -9.576 -21.734 24.022 Atomic orbital electron populations 1.21776 0.94371 1.01591 1.02956 1.22306 0.96821 0.88797 1.01294 1.62451 1.13263 1.17340 1.30996 1.22101 1.01507 0.98674 0.83957 1.22399 1.02573 1.01676 0.95843 1.20136 0.80238 0.85552 0.84827 1.90679 1.39914 1.25593 1.85752 1.48182 1.48696 1.25767 1.10794 1.21635 0.94319 0.87409 1.02723 1.19300 0.96851 0.93298 0.78053 1.21449 1.11637 1.20172 1.03266 0.92498 1.24947 0.96968 0.94909 0.97336 1.69939 1.39113 1.26041 1.18193 0.86436 0.82701 0.78831 0.79397 1.19852 1.20949 1.20824 1.22292 0.92064 0.91822 0.97129 0.91045 1.22013 0.93489 1.02986 0.96428 1.30486 1.05991 1.22752 1.13014 1.09059 0.78178 0.78430 0.77177 1.93646 1.49211 1.86414 1.63886 1.93621 1.86872 1.56221 1.56823 1.30817 1.20844 1.03939 1.15625 0.92319 0.92198 0.91790 0.90443 0.93840 0.89148 0.89079 0.89225 0.89627 0.93679 0.90716 0.92713 0.95027 0.93804 0.92723 0.88955 0.88519 0.84554 0.84245 0.83142 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.87 37.16 0.37 -0.85 16 2 C 0.04 0.27 5.37 -3.82 -0.02 0.25 16 3 N -0.52 -4.62 4.56 -224.81 -1.03 -5.65 16 4 C 0.07 0.80 4.33 -3.83 -0.02 0.78 16 5 C -0.18 -2.42 3.60 -27.88 -0.10 -2.52 16 6 C 0.51 10.03 7.67 -10.99 -0.08 9.95 16 7 O -0.54 -13.07 15.49 5.55 0.09 -12.98 16 8 N -0.60 -12.52 2.86 -182.95 -0.52 -13.04 16 9 C 0.08 1.28 10.24 59.85 0.61 1.90 16 10 C 0.24 6.37 5.16 -5.20 -0.03 6.34 16 11 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.08 0.57 1.99 -66.18 -0.13 0.44 16 20 H 0.07 0.51 6.19 -51.93 -0.32 0.19 16 21 C -0.11 -0.54 4.91 -25.67 -0.13 -0.67 16 22 C -0.59 -2.67 7.26 37.77 0.27 -2.40 16 23 S 2.39 19.29 6.11 -107.50 -0.66 18.63 16 24 O -0.93 -11.22 18.15 -57.71 -1.05 -12.27 16 25 O -0.94 -10.86 18.15 -57.71 -1.05 -11.90 16 26 C -0.58 -4.48 5.84 38.24 0.22 -4.26 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.44 5.87 -51.93 -0.30 0.14 16 31 H 0.04 0.35 6.02 -51.93 -0.31 0.03 16 32 H 0.09 1.21 6.68 -51.93 -0.35 0.86 16 33 H 0.09 1.24 6.60 -51.93 -0.34 0.89 16 34 H 0.09 1.06 5.78 -51.93 -0.30 0.76 16 35 H 0.09 0.96 6.11 -51.93 -0.32 0.65 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 39 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 0.34 6.92 -51.92 -0.36 -0.02 16 43 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.14 0.46 8.14 -51.92 -0.42 0.03 16 45 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.15 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.14 1.18 7.67 -51.93 -0.40 0.78 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -38.30 378.29 -9.66 -47.96 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -7.42 Total: -2.76 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 0.55 Total: -4.59 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.81 Total: -44.51 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -2.01 Total: -37.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 19.29 SS G_CDS: -0.66 Total: 18.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.30 -9.66 -47.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092802609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.499 kcal (2) G-P(sol) polarization free energy of solvation -38.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds