Wall clock time and date at job start Sat Apr 11 2020 03:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46949 * 2 1 4 4 C 1.46502 * 119.99965 * 264.55036 * 3 2 1 5 5 C 1.50699 * 109.47407 * 264.77763 * 4 3 2 6 6 H 1.08000 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99987 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99794 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47034 * 90.00507 * 9 7 5 11 11 H 1.48499 * 109.47138 * 209.99973 * 9 7 5 12 12 H 1.48490 * 109.47513 * 330.00100 * 9 7 5 13 13 C 1.34770 * 120.00205 * 84.55683 * 3 2 1 14 14 O 1.21288 * 119.99698 * 6.16413 * 13 3 2 15 15 C 1.50702 * 120.00427 * 186.16394 * 13 3 2 16 16 C 1.53039 * 109.46323 * 192.20277 * 15 13 3 17 17 C 1.53186 * 109.31149 * 178.62691 * 16 15 13 18 18 N 1.46925 * 108.77726 * 54.63945 * 17 16 15 19 19 S 1.65598 * 120.63445 * 126.36334 * 18 17 16 20 20 O 1.42097 * 104.27810 * 333.93320 * 19 18 17 21 21 O 1.42099 * 104.27977 * 206.07347 * 19 18 17 22 22 C 1.81408 * 104.44784 * 90.00118 * 19 18 17 23 23 C 1.52995 * 109.46939 * 180.02562 * 22 19 18 24 24 C 1.46927 * 118.73779 * 306.64168 * 18 17 16 25 25 C 1.52763 * 109.00713 * 53.30604 * 24 18 17 26 26 H 1.09008 * 109.46631 * 300.00025 * 1 2 3 27 27 H 1.08999 * 109.47307 * 59.99649 * 1 2 3 28 28 H 1.08996 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46626 * 240.00429 * 2 1 3 30 30 H 1.08994 * 109.47283 * 119.99862 * 2 1 3 31 31 H 1.09004 * 109.46882 * 24.77889 * 4 3 2 32 32 H 1.09006 * 109.46826 * 144.77504 * 4 3 2 33 33 H 0.97004 * 119.99953 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45536 * 312.17986 * 15 13 3 35 35 H 1.09005 * 109.49397 * 58.67893 * 16 15 13 36 36 H 1.09004 * 109.52332 * 298.60138 * 16 15 13 37 37 H 1.08994 * 109.59159 * 294.85044 * 17 16 15 38 38 H 1.08998 * 109.70086 * 174.49289 * 17 16 15 39 39 H 1.08997 * 109.46868 * 299.99773 * 22 19 18 40 40 H 1.08995 * 109.46582 * 60.00065 * 22 19 18 41 41 H 1.09001 * 109.47268 * 180.02562 * 23 22 19 42 42 H 1.09005 * 109.47013 * 300.00064 * 23 22 19 43 43 H 1.08993 * 109.47774 * 59.99895 * 23 22 19 44 44 H 1.08995 * 109.59308 * 173.14343 * 24 18 17 45 45 H 1.09009 * 109.58415 * 293.56847 * 24 18 17 46 46 H 1.09007 * 109.56456 * 185.55942 * 25 24 18 47 47 H 1.09000 * 109.36007 * 65.50243 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3761 2.0317 -1.2630 5 6 3.8582 1.8930 -1.4974 6 1 4.4724 1.3727 -0.7774 7 6 4.4304 2.4312 -2.6306 8 7 5.7238 2.3096 -2.8354 9 14 3.3681 3.3317 -3.8756 10 1 3.3066 4.7730 -3.5233 11 1 3.9556 3.1780 -5.2307 12 1 1.9977 2.7600 -3.8626 13 6 2.1385 2.0535 1.1619 14 8 1.9504 1.4824 2.2152 15 6 2.5068 3.5148 1.1524 16 6 2.8732 3.9576 2.5708 17 6 3.2799 5.4343 2.5513 18 7 2.1976 6.2149 1.9363 19 16 1.5436 7.5167 2.7235 20 8 1.7658 7.2419 4.0998 21 8 0.2265 7.6175 2.1999 22 6 2.5523 8.9250 2.1847 23 6 2.0413 10.2033 2.8521 24 6 1.7024 5.8146 0.6122 25 6 1.3173 4.3368 0.6509 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.8329 1.5593 -2.0816 32 1 2.1132 3.0885 -1.2146 33 1 6.1262 2.6879 -3.6328 34 1 3.3598 3.6700 0.4917 35 1 3.7055 3.3558 2.9361 36 1 2.0131 3.8256 3.2272 37 1 4.1933 5.5543 1.9689 38 1 3.4479 5.7826 3.5704 39 1 3.5912 8.7575 2.4687 40 1 2.4837 9.0277 1.1017 41 1 2.6471 11.0495 2.5281 42 1 1.0022 10.3709 2.5685 43 1 2.1101 10.1003 3.9350 44 1 0.8283 6.4119 0.3530 45 1 2.4847 5.9661 -0.1317 46 1 1.0420 4.0050 -0.3503 47 1 0.4714 4.2014 1.3250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:12 Heat of formation + Delta-G solvation = -112.788881 kcal Electronic energy + Delta-G solvation = -28525.409913 eV Core-core repulsion = 24642.246627 eV Total energy + Delta-G solvation = -3883.163286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.81468 -37.67825 -37.26377 -36.02986 -35.32217 -33.42342 -32.96865 -32.45258 -31.04175 -30.38476 -27.64046 -25.42813 -24.19222 -23.39571 -22.62114 -22.51924 -20.45220 -18.89334 -18.41947 -17.57386 -17.10528 -16.58917 -16.40720 -16.26522 -15.51441 -15.03145 -14.68080 -14.42694 -14.28657 -14.20920 -13.84146 -13.59647 -13.31437 -13.24911 -12.96934 -12.79825 -12.57548 -12.46245 -12.36387 -12.19324 -12.04497 -11.90033 -11.87837 -11.72049 -11.67729 -11.25758 -11.07935 -10.95533 -10.82825 -10.74934 -10.44822 -10.37146 -10.32277 -10.23424 -9.66671 -9.17766 -8.86653 -8.74873 -7.75560 -6.27208 -4.28730 0.09592 2.51399 3.09776 3.19613 3.21099 3.34675 3.70559 3.83566 3.95611 4.20159 4.29119 4.50693 4.63272 4.86557 4.98562 5.03973 5.07497 5.21652 5.26933 5.28794 5.38910 5.49245 5.50646 5.56014 5.59481 5.72226 5.76302 5.79804 5.88531 5.92558 6.02767 6.07706 6.18128 6.24114 6.36648 6.37451 6.47370 6.52980 6.61030 6.68000 6.72021 7.36267 7.39222 8.12923 8.37413 8.78532 8.94841 9.32160 10.85351 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004234 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.353042 B = 6611.252623 C = 7827.498473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.592 5.592 4 C 0.203 3.797 5 C -0.541 4.541 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.527 3.473 14 O -0.569 6.569 15 C -0.107 4.107 16 C -0.107 4.107 17 C 0.117 3.883 18 N -0.998 5.998 19 S 2.607 3.393 20 O -0.954 6.954 21 O -0.955 6.955 22 C -0.635 4.635 23 C -0.147 4.147 24 C 0.118 3.882 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 11.943 6.056 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.323 5.323 4 C 0.082 3.918 5 C -0.579 4.579 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.528 5.528 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.315 3.685 14 O -0.449 6.449 15 C -0.129 4.129 16 C -0.146 4.146 17 C -0.007 4.007 18 N -0.837 5.837 19 S 2.700 3.300 20 O -0.944 6.944 21 O -0.946 6.946 22 C -0.764 4.764 23 C -0.205 4.205 24 C -0.006 4.006 25 C -0.162 4.162 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.310 11.670 7.021 15.457 hybrid contribution 0.356 0.656 -1.488 1.665 sum -6.954 12.326 5.533 15.195 Atomic orbital electron populations 1.22130 0.96901 1.01375 1.01819 1.21250 0.93173 0.83758 1.02712 1.47929 1.63305 1.13213 1.07820 1.19949 0.97005 0.93384 0.81440 1.21409 0.91112 1.37502 1.07881 0.90419 1.24875 0.94777 0.95579 0.97443 1.69896 1.10281 1.44908 1.27665 0.86969 0.81301 0.80735 0.81511 1.19743 1.20917 1.18812 1.20368 0.76071 0.88866 0.83173 1.90592 1.52703 1.70464 1.31187 1.21266 1.00688 0.91857 0.99050 1.21616 1.02837 0.94128 0.96045 1.21562 0.88834 0.91963 0.98387 1.57665 1.51160 1.44120 1.30706 1.05130 0.75281 0.75188 0.74385 1.93585 1.86385 1.82996 1.31482 1.93580 1.34168 1.86331 1.80491 1.30595 1.16476 1.17251 1.12092 1.21499 1.02349 0.95723 1.00966 1.21430 0.99795 0.96477 0.82944 1.21818 0.97682 0.93982 1.02702 0.92715 0.92829 0.92290 0.90411 0.91030 0.94913 0.94716 0.92365 0.86601 0.90202 0.90866 0.90854 0.88852 0.85004 0.85020 0.90120 0.91045 0.91020 0.88790 0.90599 0.89520 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 10.20 37.16 0.38 -2.08 16 2 C 0.11 2.04 6.10 -4.04 -0.02 2.01 16 3 N -0.59 -11.81 2.48 -175.05 -0.43 -12.24 16 4 C 0.20 4.26 3.76 -5.19 -0.02 4.24 16 5 C -0.54 -13.64 9.32 -34.44 -0.32 -13.96 16 6 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.08 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.89 -24.93 13.96 55.43 0.77 -24.16 16 9 Si 0.87 18.76 27.47 -169.99 -4.67 14.09 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 13 C 0.53 10.56 6.82 -10.99 -0.07 10.49 16 14 O -0.57 -12.62 15.65 5.55 0.09 -12.53 16 15 C -0.11 -1.83 1.65 -91.73 -0.15 -1.99 16 16 C -0.11 -1.64 4.71 -26.61 -0.13 -1.77 16 17 C 0.12 1.45 6.43 -3.71 -0.02 1.42 16 18 N -1.00 -12.10 3.23 -113.77 -0.37 -12.46 16 19 S 2.61 30.13 5.45 -107.50 -0.59 29.55 16 20 O -0.95 -13.65 16.59 -57.54 -0.95 -14.61 16 21 O -0.96 -13.64 16.58 -57.54 -0.95 -14.59 16 22 C -0.64 -4.89 6.90 37.15 0.26 -4.63 16 23 C -0.15 -1.04 9.92 37.15 0.37 -0.67 16 24 C 0.12 1.48 6.40 -3.93 -0.03 1.45 16 25 C -0.12 -1.83 5.02 -26.83 -0.13 -1.96 16 26 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.35 8.03 -51.93 -0.42 0.93 16 30 H 0.07 1.32 7.51 -51.93 -0.39 0.93 16 31 H 0.03 0.68 7.09 -51.93 -0.37 0.32 16 32 H 0.04 0.68 4.02 -51.93 -0.21 0.47 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.12 2.13 6.99 -51.93 -0.36 1.77 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.04 6.86 -51.93 -0.36 0.69 16 39 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.09 1.06 6.85 -51.93 -0.36 0.70 16 45 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.09 1.28 5.86 -51.93 -0.30 0.98 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -33.25 380.17 -9.21 -42.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.84 Total: 4.31 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 0.01 Total: -5.55 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.03 Total: -48.86 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.82 Total: -41.73 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.67 Total: 14.09 kcal Atomic # 16 Polarization: 30.13 SS G_CDS: -0.59 Total: 29.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.25 -9.21 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.328 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds