Wall clock time and date at job start Sat Apr 11 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46949 * 2 1 4 4 C 1.46502 * 119.99965 * 264.55036 * 3 2 1 5 5 C 1.50699 * 109.47407 * 264.77763 * 4 3 2 6 6 H 1.08000 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99987 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99794 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47034 * 90.00507 * 9 7 5 11 11 H 1.48499 * 109.47138 * 209.99973 * 9 7 5 12 12 H 1.48490 * 109.47513 * 330.00100 * 9 7 5 13 13 C 1.34770 * 120.00205 * 84.55683 * 3 2 1 14 14 O 1.21288 * 119.99698 * 6.16413 * 13 3 2 15 15 C 1.50702 * 120.00427 * 186.16394 * 13 3 2 16 16 C 1.53039 * 109.46323 * 192.20277 * 15 13 3 17 17 C 1.53186 * 109.31149 * 178.62691 * 16 15 13 18 18 N 1.46925 * 108.77726 * 54.63945 * 17 16 15 19 19 S 1.65598 * 120.63445 * 126.36334 * 18 17 16 20 20 O 1.42097 * 104.27810 * 333.93320 * 19 18 17 21 21 O 1.42099 * 104.27977 * 206.07347 * 19 18 17 22 22 C 1.81408 * 104.44784 * 90.00118 * 19 18 17 23 23 C 1.52995 * 109.46939 * 180.02562 * 22 19 18 24 24 C 1.46927 * 118.73779 * 306.64168 * 18 17 16 25 25 C 1.52763 * 109.00713 * 53.30604 * 24 18 17 26 26 H 1.09008 * 109.46631 * 300.00025 * 1 2 3 27 27 H 1.08999 * 109.47307 * 59.99649 * 1 2 3 28 28 H 1.08996 * 109.47076 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46626 * 240.00429 * 2 1 3 30 30 H 1.08994 * 109.47283 * 119.99862 * 2 1 3 31 31 H 1.09004 * 109.46882 * 24.77889 * 4 3 2 32 32 H 1.09006 * 109.46826 * 144.77504 * 4 3 2 33 33 H 0.97004 * 119.99953 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.45536 * 312.17986 * 15 13 3 35 35 H 1.09005 * 109.49397 * 58.67893 * 16 15 13 36 36 H 1.09004 * 109.52332 * 298.60138 * 16 15 13 37 37 H 1.08994 * 109.59159 * 294.85044 * 17 16 15 38 38 H 1.08998 * 109.70086 * 174.49289 * 17 16 15 39 39 H 1.08997 * 109.46868 * 299.99773 * 22 19 18 40 40 H 1.08995 * 109.46582 * 60.00065 * 22 19 18 41 41 H 1.09001 * 109.47268 * 180.02562 * 23 22 19 42 42 H 1.09005 * 109.47013 * 300.00064 * 23 22 19 43 43 H 1.08993 * 109.47774 * 59.99895 * 23 22 19 44 44 H 1.08995 * 109.59308 * 173.14343 * 24 18 17 45 45 H 1.09009 * 109.58415 * 293.56847 * 24 18 17 46 46 H 1.09007 * 109.56456 * 185.55942 * 25 24 18 47 47 H 1.09000 * 109.36007 * 65.50243 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3761 2.0317 -1.2630 5 6 3.8582 1.8930 -1.4974 6 1 4.4724 1.3727 -0.7774 7 6 4.4304 2.4312 -2.6306 8 7 5.7238 2.3096 -2.8354 9 14 3.3681 3.3317 -3.8756 10 1 3.3066 4.7730 -3.5233 11 1 3.9556 3.1780 -5.2307 12 1 1.9977 2.7600 -3.8626 13 6 2.1385 2.0535 1.1619 14 8 1.9504 1.4824 2.2152 15 6 2.5068 3.5148 1.1524 16 6 2.8732 3.9576 2.5708 17 6 3.2799 5.4343 2.5513 18 7 2.1976 6.2149 1.9363 19 16 1.5436 7.5167 2.7235 20 8 1.7658 7.2419 4.0998 21 8 0.2265 7.6175 2.1999 22 6 2.5523 8.9250 2.1847 23 6 2.0413 10.2033 2.8521 24 6 1.7024 5.8146 0.6122 25 6 1.3173 4.3368 0.6509 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.8329 1.5593 -2.0816 32 1 2.1132 3.0885 -1.2146 33 1 6.1262 2.6879 -3.6328 34 1 3.3598 3.6700 0.4917 35 1 3.7055 3.3558 2.9361 36 1 2.0131 3.8256 3.2272 37 1 4.1933 5.5543 1.9689 38 1 3.4479 5.7826 3.5704 39 1 3.5912 8.7575 2.4687 40 1 2.4837 9.0277 1.1017 41 1 2.6471 11.0495 2.5281 42 1 1.0022 10.3709 2.5685 43 1 2.1101 10.1003 3.9350 44 1 0.8283 6.4119 0.3530 45 1 2.4847 5.9661 -0.1317 46 1 1.0420 4.0050 -0.3503 47 1 0.4714 4.2014 1.3250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:11 Heat of formation + Delta-G solvation = -136.199447 kcal Electronic energy + Delta-G solvation = -28526.425072 eV Core-core repulsion = 24642.246627 eV Total energy + Delta-G solvation = -3884.178444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.29512 -38.88559 -38.24332 -37.01301 -36.97978 -34.70875 -34.00420 -33.85796 -32.18979 -31.78733 -29.41913 -26.61548 -24.85272 -24.66504 -24.27694 -23.80911 -21.65197 -20.03874 -19.61867 -19.03655 -18.72024 -17.95376 -17.41217 -17.21366 -17.06724 -16.26925 -15.99355 -15.84066 -15.48417 -15.09741 -14.98957 -14.82440 -14.62520 -14.44671 -14.18986 -14.05433 -13.65985 -13.64393 -13.39901 -13.37639 -13.23828 -13.20403 -13.14971 -12.93018 -12.62887 -12.46537 -12.38873 -12.38355 -12.07881 -12.01677 -11.86530 -11.70743 -11.65519 -11.53913 -11.39778 -10.75577 -10.58519 -9.93727 -9.41618 -8.25635 -6.33678 -0.75342 1.43713 1.47469 1.56175 1.61729 1.75314 2.31602 2.38870 2.90070 3.08028 3.12751 3.49977 3.68019 3.78797 3.81780 3.92982 4.06676 4.14791 4.18919 4.36961 4.38204 4.41486 4.43760 4.51482 4.64297 4.70646 4.72354 4.76869 4.78405 4.83100 4.87386 4.89857 4.90500 4.96842 5.04117 5.10271 5.17218 5.24300 5.29081 5.36805 5.49067 5.59906 5.76900 6.23421 6.63524 6.73358 7.27056 7.38416 8.90608 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.004234 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.353042 B = 6611.252623 C = 7827.498473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.212 3.788 5 C -0.542 4.542 6 H 0.024 0.976 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.936 3.064 10 H -0.247 1.247 11 H -0.291 1.291 12 H -0.240 1.240 13 C 0.516 3.484 14 O -0.598 6.598 15 C -0.103 4.103 16 C -0.107 4.107 17 C 0.122 3.878 18 N -1.002 6.002 19 S 2.603 3.397 20 O -0.991 6.991 21 O -0.989 6.989 22 C -0.606 4.606 23 C -0.161 4.161 24 C 0.118 3.882 25 C -0.122 4.122 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.268 0.732 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.109 0.891 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.817 14.652 4.479 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.091 3.909 5 C -0.580 4.580 6 H 0.042 0.958 7 C -0.177 4.177 8 N -0.582 5.582 9 Si 0.758 3.242 10 H -0.171 1.171 11 H -0.217 1.217 12 H -0.163 1.163 13 C 0.306 3.694 14 O -0.480 6.480 15 C -0.124 4.124 16 C -0.146 4.146 17 C -0.003 4.003 18 N -0.839 5.839 19 S 2.702 3.298 20 O -0.981 6.981 21 O -0.979 6.979 22 C -0.740 4.740 23 C -0.220 4.220 24 C -0.007 4.007 25 C -0.161 4.161 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.172 0.828 40 H 0.173 0.827 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.530 14.329 5.472 17.551 hybrid contribution 0.812 -0.253 -0.917 1.251 sum -7.718 14.076 4.555 16.686 Atomic orbital electron populations 1.22014 0.94215 1.03089 1.01575 1.21427 0.95370 0.82800 1.02111 1.48057 1.63139 1.13989 1.07588 1.19832 0.94089 0.94932 0.82082 1.21498 0.92944 1.36701 1.06853 0.95762 1.25773 0.95938 0.96361 0.99583 1.70067 1.12756 1.46705 1.28679 0.85885 0.80085 0.80578 0.77639 1.17135 1.21744 1.16290 1.21006 0.75426 0.90187 0.82763 1.90565 1.54020 1.71368 1.32067 1.21267 1.01140 0.90219 0.99822 1.21600 1.01723 0.96626 0.94698 1.21535 0.89515 0.89598 0.99636 1.57591 1.50911 1.44960 1.30440 1.05105 0.75174 0.76057 0.73478 1.93535 1.86799 1.84049 1.33754 1.93532 1.36788 1.86983 1.80615 1.30344 1.16071 1.14069 1.13479 1.21701 1.03050 0.95999 1.01201 1.21506 1.01091 0.94605 0.83500 1.21834 0.96222 0.95627 1.02414 0.94076 0.91770 0.89654 0.90130 0.92547 0.93743 0.92366 0.92312 0.87808 0.91335 0.92598 0.88921 0.87785 0.82763 0.82660 0.87761 0.90894 0.90976 0.87267 0.88839 0.89112 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 10.20 71.98 0.73 -3.60 16 2 C 0.11 3.78 6.10 86.38 0.53 4.31 16 3 N -0.60 -24.00 2.48 -826.13 -2.05 -26.05 16 4 C 0.21 8.66 3.76 85.63 0.32 8.98 16 5 C -0.54 -27.73 9.32 25.60 0.24 -27.49 16 6 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 7 C 0.02 1.15 5.47 84.65 0.46 1.61 16 8 N -0.94 -53.83 13.96 21.45 0.30 -53.53 16 9 Si 0.94 36.90 27.47 68.60 1.88 38.79 16 10 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 11 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.24 -8.48 6.54 99.48 0.65 -7.83 16 13 C 0.52 21.25 6.82 87.66 0.60 21.85 16 14 O -0.60 -27.60 15.65 -3.05 -0.05 -27.65 16 15 C -0.10 -3.55 1.65 -11.51 -0.02 -3.57 16 16 C -0.11 -3.37 4.71 30.67 0.14 -3.23 16 17 C 0.12 2.88 6.43 86.36 0.56 3.43 16 18 N -1.00 -22.44 3.23 -513.86 -1.66 -24.10 16 19 S 2.60 55.69 5.45 -56.49 -0.31 55.38 16 20 O -0.99 -27.74 16.59 -127.65 -2.12 -29.85 16 21 O -0.99 -26.96 16.58 -127.65 -2.12 -29.08 16 22 C -0.61 -6.94 6.90 71.98 0.50 -6.44 16 23 C -0.16 -1.72 9.92 71.98 0.71 -1.01 16 24 C 0.12 2.65 6.40 86.22 0.55 3.20 16 25 C -0.12 -3.48 5.02 30.53 0.15 -3.33 16 26 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 2.79 8.03 -2.39 -0.02 2.77 16 30 H 0.06 2.16 7.51 -2.39 -0.02 2.14 16 31 H 0.04 1.74 7.09 -2.38 -0.02 1.72 16 32 H 0.06 2.14 4.02 -2.38 -0.01 2.13 16 33 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.10 3.83 6.99 -2.39 -0.02 3.81 16 35 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.06 1.93 8.01 -2.38 -0.02 1.91 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 2.23 6.86 -2.39 -0.02 2.22 16 39 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.11 2.15 6.85 -2.39 -0.02 2.13 16 45 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.09 2.48 5.86 -2.38 -0.01 2.46 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -75.34 380.17 0.26 -75.08 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.89 Total: 26.29 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.48 Total: -5.27 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.41 Total: -103.69 kcal Atomic # 8 Polarization: -82.29 SS G_CDS: -4.28 Total: -86.58 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 1.88 Total: 38.79 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.31 Total: 55.38 kcal Total: -75.34 0.26 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.120 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds