Wall clock time and date at job start Sat Apr 11 2020 03:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47125 * 2 1 4 4 N 1.46500 * 109.46750 * 240.00654 * 2 1 3 5 5 C 1.39909 * 119.99818 * 84.99862 * 4 2 1 6 6 C 1.39050 * 119.93863 * 0.02562 * 5 4 2 7 7 C 1.38043 * 120.20314 * 180.25475 * 6 5 4 8 8 C 1.38660 * 119.94621 * 359.48383 * 7 6 5 9 9 N 1.39541 * 133.24832 * 180.19489 * 8 7 6 10 10 H 0.97004 * 125.83694 * 0.32476 * 9 8 7 11 11 C 1.34624 * 108.32352 * 180.30539 * 9 8 7 12 12 O 1.21697 * 125.15522 * 179.97438 * 11 9 8 13 13 N 1.34624 * 109.69284 * 359.97438 * 11 9 8 14 14 C 1.46504 * 125.79346 * 179.97438 * 13 11 9 15 15 C 1.39285 * 108.41448 * 0.02562 * 13 11 9 16 16 C 1.38630 * 133.25602 * 180.02562 * 15 13 11 17 17 C 1.50693 * 109.47060 * 120.00999 * 2 1 3 18 18 O 1.21278 * 120.00230 * 120.00124 * 17 2 1 19 19 N 1.34776 * 120.00060 * 299.99560 * 17 2 1 20 20 C 1.46507 * 119.99815 * 0.02562 * 19 17 2 21 21 C 1.46500 * 120.00365 * 180.02562 * 19 17 2 22 22 C 1.50700 * 109.47368 * 89.99491 * 21 19 17 23 23 H 1.08002 * 119.99938 * 0.02562 * 22 21 19 24 24 C 1.37878 * 119.99951 * 179.97438 * 22 21 19 25 25 N 1.31519 * 120.00004 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99858 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47505 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47286 * 120.00520 * 26 24 22 29 29 H 1.48510 * 109.46872 * 240.00301 * 26 24 22 30 30 H 1.08999 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46858 * 299.99371 * 1 2 3 32 32 H 1.09008 * 109.47369 * 59.98916 * 1 2 3 33 33 H 0.97003 * 120.00238 * 264.99897 * 4 2 1 34 34 H 1.08002 * 119.89321 * 359.96714 * 6 5 4 35 35 H 1.08005 * 120.02434 * 179.74477 * 7 6 5 36 36 H 1.08999 * 109.46848 * 270.00249 * 14 13 11 37 37 H 1.08990 * 109.47065 * 30.00078 * 14 13 11 38 38 H 1.08997 * 109.46967 * 150.00475 * 14 13 11 39 39 H 1.08001 * 120.10202 * 359.94867 * 16 15 13 40 40 H 1.08995 * 109.46654 * 90.00237 * 20 19 17 41 41 H 1.09005 * 109.46867 * 210.00087 * 20 19 17 42 42 H 1.09001 * 109.46946 * 329.99736 * 20 19 17 43 43 H 1.08999 * 109.47301 * 210.00000 * 21 19 17 44 44 H 1.09004 * 109.46384 * 329.99756 * 21 19 17 45 45 H 0.96998 * 119.99750 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1518 0.0076 -2.4014 6 6 1.8212 1.3569 -2.4620 7 6 1.9459 2.0497 -3.6495 8 6 2.4122 1.4018 -4.7832 9 7 2.6460 1.8182 -6.0944 10 1 2.5062 2.7141 -6.4392 11 6 3.0992 0.7643 -6.7988 12 8 3.3993 0.7863 -7.9779 13 7 3.1700 -0.3179 -6.0010 14 6 3.6171 -1.6530 -6.4058 15 6 2.7450 0.0470 -4.7258 16 6 2.6141 -0.6474 -3.5331 17 6 2.0323 -0.7106 1.2303 18 8 2.7296 -1.6966 1.1189 19 7 1.7068 -0.2503 2.4545 20 6 0.8641 0.9406 2.5891 21 6 2.1955 -0.9407 3.6506 22 6 3.5230 -0.3569 4.0605 23 1 3.9588 0.4483 3.4876 24 6 4.1806 -0.8500 5.1675 25 7 3.6496 -1.8301 5.8654 26 14 5.8256 -0.1258 5.6760 27 1 6.2027 0.9572 4.7325 28 1 5.7192 0.4285 7.0496 29 1 6.8633 -1.1879 5.6499 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5140 -0.8899 33 1 2.2489 -1.6317 -1.1529 34 1 1.4614 1.8632 -1.5785 35 1 1.6844 3.0967 -3.6943 36 1 2.7624 -2.2316 -6.7563 37 1 4.3488 -1.5632 -7.2086 38 1 4.0725 -2.1575 -5.5537 39 1 2.8707 -1.6954 -3.4856 40 1 -0.1837 0.6422 2.6226 41 1 1.1219 1.4660 3.5086 42 1 1.0273 1.5994 1.7362 43 1 1.4776 -0.8156 4.4612 44 1 2.3169 -2.0020 3.4332 45 1 4.1124 -2.1772 6.6440 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282226063.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:40 Heat of formation + Delta-G solvation = 7.360396 kcal Electronic energy + Delta-G solvation = -28002.851319 eV Core-core repulsion = 24021.746896 eV Total energy + Delta-G solvation = -3981.104423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.51037 -39.83601 -38.60811 -36.78990 -35.26556 -35.06691 -34.47446 -32.74149 -31.29138 -30.06062 -28.01468 -27.59198 -27.30965 -26.21470 -24.19198 -23.02774 -22.57066 -21.84175 -21.09596 -18.91420 -18.17476 -18.05939 -17.18690 -16.67098 -16.60576 -16.09413 -15.77629 -15.67904 -15.13983 -14.79614 -14.57120 -14.29397 -14.13389 -13.83814 -13.75784 -13.61245 -13.22140 -13.08029 -12.89184 -12.69024 -12.39489 -12.26602 -12.13224 -11.85113 -11.48808 -11.34406 -11.18809 -11.17222 -10.93439 -10.76261 -10.73231 -10.66449 -10.23517 -9.70044 -9.50493 -9.04231 -8.51100 -8.34564 -7.80155 -7.21459 -6.12008 -4.17061 1.09011 1.41340 2.12803 2.75763 3.02532 3.19271 3.25101 3.33357 3.35921 3.39251 3.62996 3.89868 4.38402 4.38813 4.58198 4.78925 4.93571 5.03120 5.04573 5.06738 5.11700 5.19344 5.23222 5.26778 5.34282 5.40197 5.47173 5.61331 5.66690 5.78666 5.85359 5.97444 6.04442 6.18437 6.20320 6.27303 6.34087 6.73798 6.88154 7.07565 7.23881 7.32493 7.40559 7.73330 7.83813 8.06750 8.13703 8.24406 8.76684 8.92074 9.48444 10.96149 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018487 B = 0.002391 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.230252 B =11709.259120 C =12190.485380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.130 3.870 3 H 0.101 0.899 4 N -0.720 5.720 5 C 0.245 3.755 6 C -0.189 4.189 7 C -0.051 4.051 8 C 0.019 3.981 9 N -0.642 5.642 10 H 0.431 0.569 11 C 0.680 3.320 12 O -0.568 6.568 13 N -0.542 5.542 14 C 0.100 3.900 15 C 0.142 3.858 16 C -0.191 4.191 17 C 0.501 3.499 18 O -0.537 6.537 19 N -0.595 5.595 20 C 0.078 3.922 21 C 0.245 3.755 22 C -0.527 4.527 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.034 0.966 44 H 0.044 0.956 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 7.026 -18.188 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.118 0.882 4 N -0.349 5.349 5 C 0.138 3.862 6 C -0.212 4.212 7 C -0.073 4.073 8 C -0.082 4.082 9 N -0.288 5.288 10 H 0.272 0.728 11 C 0.382 3.618 12 O -0.445 6.445 13 N -0.265 5.265 14 C -0.042 4.042 15 C 0.040 3.960 16 C -0.218 4.218 17 C 0.287 3.713 18 O -0.414 6.414 19 N -0.327 5.327 20 C -0.066 4.066 21 C 0.126 3.874 22 C -0.566 4.566 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.463 6.304 -18.742 21.135 hybrid contribution 0.977 0.443 0.356 1.131 sum -6.486 6.746 -18.385 20.630 Atomic orbital electron populations 1.22482 0.93838 1.03573 1.03508 1.20786 0.94982 0.97378 0.84849 0.88186 1.44512 1.71804 1.13095 1.05512 1.17313 0.92516 0.90968 0.85357 1.20444 1.09738 0.92888 0.98179 1.19771 0.98753 0.99435 0.89301 1.17760 1.10935 0.92877 0.86666 1.42785 1.64428 1.12745 1.08840 0.72805 1.15905 0.80838 0.80410 0.84663 1.91047 1.57959 1.83380 1.12143 1.44957 1.62116 1.11014 1.08400 1.21735 1.00709 0.79695 1.02016 1.17625 0.99846 0.92330 0.86183 1.19220 1.12710 1.00468 0.89361 1.20237 0.81248 0.85344 0.84520 1.90671 1.37911 1.26855 1.85965 1.48096 1.49329 1.28178 1.07116 1.21863 0.93911 0.88045 1.02787 1.19340 0.94364 0.93710 0.79981 1.21440 1.04799 1.19133 1.11256 0.92390 1.24940 0.98002 0.94931 0.96238 1.69938 1.38969 1.26027 1.18348 0.86436 0.83638 0.79086 0.78230 1.19774 1.20910 1.20852 0.91822 0.89951 0.91440 0.75156 0.84852 0.85219 0.91334 0.89597 0.89734 0.85326 0.93051 0.90540 0.92198 0.94763 0.93779 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.06 37.16 0.34 -1.43 16 2 C 0.13 1.66 1.87 -69.09 -0.13 1.54 16 3 H 0.10 1.15 5.74 -51.93 -0.30 0.85 16 4 N -0.72 -9.04 5.13 -53.25 -0.27 -9.31 16 5 C 0.25 2.74 6.64 -83.70 -0.56 2.18 16 6 C -0.19 -1.81 8.84 -39.35 -0.35 -2.16 16 7 C -0.05 -0.44 10.06 -39.50 -0.40 -0.84 16 8 C 0.02 0.20 7.26 -83.68 -0.61 -0.41 16 9 N -0.64 -6.47 6.16 -14.24 -0.09 -6.56 16 10 H 0.43 3.13 8.96 -40.82 -0.37 2.76 16 11 C 0.68 8.72 8.82 -87.19 -0.77 7.95 16 12 O -0.57 -8.94 17.76 5.19 0.09 -8.85 16 13 N -0.54 -6.11 3.18 -126.34 -0.40 -6.51 16 14 C 0.10 0.81 11.00 59.85 0.66 1.47 16 15 C 0.14 1.59 6.83 -83.81 -0.57 1.02 16 16 C -0.19 -2.06 9.86 -39.27 -0.39 -2.45 16 17 C 0.50 9.34 7.14 -10.99 -0.08 9.26 16 18 O -0.54 -12.36 15.42 5.56 0.09 -12.27 16 19 N -0.60 -11.43 2.86 -182.95 -0.52 -11.95 16 20 C 0.08 1.05 8.80 59.85 0.53 1.58 16 21 C 0.25 6.06 5.16 -5.19 -0.03 6.03 16 22 C -0.53 -14.38 9.39 -34.44 -0.32 -14.70 16 23 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 26 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.75 4.53 -51.93 -0.24 0.51 16 32 H 0.07 0.57 7.70 -51.92 -0.40 0.17 16 33 H 0.41 5.57 7.80 -40.82 -0.32 5.25 16 34 H 0.13 1.09 6.09 -52.49 -0.32 0.77 16 35 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.05 0.58 6.95 -51.93 -0.36 0.21 16 41 H 0.08 1.09 8.07 -51.93 -0.42 0.68 16 42 H 0.06 0.62 6.01 -51.93 -0.31 0.31 16 43 H 0.03 0.85 8.07 -51.93 -0.42 0.44 16 44 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -35.29 372.88 -8.45 -43.75 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.91 Total: 4.24 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: -2.77 Total: 10.64 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.55 Total: -59.43 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.18 Total: -21.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.29 -8.45 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282226063.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.107 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds