Wall clock time and date at job start Sat Apr 11 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47053 * 2 1 4 4 C 1.36942 * 119.99710 * 263.76425 * 3 2 1 5 5 H 1.07997 * 119.99366 * 185.85488 * 4 3 2 6 6 C 1.38807 * 120.00072 * 5.85614 * 4 3 2 7 7 N 1.31620 * 120.00103 * 33.06561 * 6 4 3 8 8 Si 1.86797 * 120.00059 * 213.06403 * 6 4 3 9 9 H 1.48493 * 109.47352 * 95.00193 * 8 6 4 10 10 H 1.48501 * 109.47039 * 215.00056 * 8 6 4 11 11 H 1.48502 * 109.47232 * 334.99905 * 8 6 4 12 12 C 1.46498 * 120.00185 * 83.76544 * 3 2 1 13 13 C 1.53001 * 109.46954 * 270.00103 * 12 3 2 14 14 N 1.46498 * 109.46954 * 180.02562 * 13 12 3 15 15 C 1.34772 * 120.00225 * 179.97438 * 14 13 12 16 16 O 1.21802 * 119.99858 * 5.08875 * 15 14 13 17 17 C 1.41651 * 120.00494 * 185.09013 * 15 14 13 18 18 C 1.38502 * 126.78547 * 354.85984 * 17 15 14 19 19 N 1.32326 * 108.25972 * 179.97438 * 18 17 15 20 20 C 1.33329 * 109.85216 * 0.02562 * 19 18 17 21 21 C 1.40334 * 131.73728 * 179.97438 * 20 19 18 22 22 C 1.37975 * 119.21670 * 180.02562 * 21 20 19 23 23 O 1.35642 * 120.33185 * 180.02562 * 22 21 20 24 24 C 1.42896 * 117.00166 * 179.97438 * 23 22 21 25 25 C 1.40762 * 119.33844 * 0.02562 * 22 21 20 26 26 C 1.35010 * 120.04167 * 0.02562 * 25 22 21 27 27 N 1.36034 * 120.85888 * 0.25498 * 26 25 22 28 28 H 1.09006 * 109.47273 * 60.00013 * 1 2 3 29 29 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47075 * 300.00390 * 1 2 3 31 31 H 1.08998 * 109.47075 * 239.99609 * 2 1 3 32 32 H 1.09001 * 109.46763 * 119.99477 * 2 1 3 33 33 H 0.96998 * 120.00374 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.47265 * 149.99861 * 12 3 2 35 35 H 1.09003 * 109.47267 * 29.99737 * 12 3 2 36 36 H 1.08998 * 109.47236 * 60.00169 * 13 12 3 37 37 H 1.09003 * 109.47163 * 299.99463 * 13 12 3 38 38 H 0.97008 * 120.00261 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.87343 * 0.03624 * 18 17 15 40 40 H 1.07997 * 120.39157 * 0.02795 * 21 20 19 41 41 H 1.08997 * 109.47169 * 60.00374 * 24 23 22 42 42 H 1.09001 * 109.47170 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47368 * 299.99605 * 24 23 22 44 44 H 1.08005 * 119.97483 * 180.02562 * 25 22 21 45 45 H 1.07998 * 119.56567 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3680 1.9838 -1.1790 5 1 2.8162 2.9663 -1.1710 6 6 2.1463 1.3318 -2.3841 7 7 1.1067 0.5362 -2.5204 8 14 3.3233 1.5835 -3.8126 9 1 4.3352 0.4967 -3.8176 10 1 2.5649 1.5595 -5.0891 11 1 4.0055 2.8944 -3.6668 12 6 2.1326 2.1178 1.2612 13 6 0.8204 2.8522 1.5436 14 7 0.9349 3.5892 2.8044 15 6 -0.1062 4.3153 3.2575 16 8 -1.1720 4.2851 2.6686 17 6 0.0388 5.1135 4.4187 18 6 1.1456 5.1765 5.2489 19 7 0.8870 6.0373 6.2201 20 6 -0.3379 6.5405 6.0648 21 6 -1.0666 7.4742 6.8175 22 6 -2.3413 7.8161 6.4149 23 8 -3.0656 8.7165 7.1252 24 6 -4.3767 9.0187 6.6441 25 6 -2.8825 7.2212 5.2597 26 6 -2.1567 6.3253 4.5573 27 7 -0.9017 5.9804 4.9531 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9515 0.0808 -3.3627 34 1 2.9449 2.8407 1.1874 35 1 2.3400 1.4197 2.0722 36 1 0.0080 2.1292 1.6174 37 1 0.6130 3.5504 0.7326 38 1 1.7603 3.5553 3.3129 39 1 2.0626 4.6197 5.1244 40 1 -0.6348 7.9199 7.7014 41 1 -4.9763 8.1085 6.6273 42 1 -4.8457 9.7501 7.3023 43 1 -4.3086 9.4276 5.6360 44 1 -3.8792 7.4817 4.9350 45 1 -2.5797 5.8733 3.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663403634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:14:17 Heat of formation + Delta-G solvation = 52.342816 kcal Electronic energy + Delta-G solvation = -27696.505456 eV Core-core repulsion = 23717.351617 eV Total energy + Delta-G solvation = -3979.153839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.11377 -40.08330 -39.14661 -36.79366 -36.44103 -34.36492 -33.39819 -31.56681 -30.78254 -30.12548 -29.33726 -27.92183 -27.00457 -24.56673 -24.02842 -23.40283 -22.28901 -21.73839 -20.66449 -20.20200 -18.49541 -18.32799 -17.30399 -16.84542 -16.65578 -16.54294 -15.99132 -15.52037 -15.17442 -14.86209 -14.82276 -14.54510 -14.24897 -13.80586 -13.70561 -13.53343 -13.40254 -13.02437 -12.69379 -12.49090 -12.16091 -11.96196 -11.89968 -11.85683 -11.46322 -11.17801 -10.77903 -10.58050 -10.55475 -10.37450 -10.34744 -9.95166 -9.90735 -9.69295 -9.38994 -9.28300 -8.71174 -8.34967 -7.88154 -7.02334 -5.87063 -3.07947 0.33871 0.58608 2.07377 2.12124 2.55419 3.14358 3.39309 3.43421 3.47843 3.49153 3.56096 4.01051 4.09304 4.22115 4.50908 4.52451 4.61493 4.63181 4.70127 4.86975 4.96541 5.13057 5.23992 5.28787 5.49669 5.51980 5.57617 5.81329 5.85395 5.96270 6.18910 6.23664 6.47985 6.58315 6.60526 6.66019 6.73372 6.84480 6.86942 7.04939 7.10128 7.45015 7.60702 7.71178 7.73843 8.04895 8.27342 8.37539 9.16966 9.81700 10.26362 11.19341 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.002157 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.452471 B =12977.797468 C =13237.851421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 N -0.589 5.589 4 C -0.262 4.262 5 H 0.077 0.923 6 C 0.006 3.994 7 N -0.882 5.882 8 Si 0.886 3.114 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.280 1.280 12 C 0.143 3.857 13 C 0.092 3.908 14 N -0.712 5.712 15 C 0.590 3.410 16 O -0.560 6.560 17 C -0.144 4.144 18 C 0.113 3.887 19 N -0.501 5.501 20 C 0.277 3.723 21 C -0.147 4.147 22 C 0.157 3.843 23 O -0.305 6.305 24 C 0.023 3.977 25 C -0.217 4.217 26 C 0.124 3.876 27 N -0.340 5.340 28 H 0.090 0.910 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.083 0.917 32 H 0.008 0.992 33 H 0.253 0.747 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.396 0.604 39 H 0.193 0.807 40 H 0.162 0.838 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.161 0.839 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.006 13.362 19.208 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 N -0.310 5.310 4 C -0.391 4.391 5 H 0.094 0.906 6 C -0.193 4.193 7 N -0.526 5.526 8 Si 0.716 3.284 9 H -0.216 1.216 10 H -0.222 1.222 11 H -0.205 1.205 12 C 0.014 3.986 13 C -0.033 4.033 14 N -0.363 5.363 15 C 0.378 3.622 16 O -0.441 6.441 17 C -0.257 4.257 18 C -0.047 4.047 19 N -0.221 5.221 20 C 0.038 3.962 21 C -0.169 4.169 22 C 0.105 3.895 23 O -0.216 6.216 24 C -0.072 4.072 25 C -0.239 4.239 26 C -0.002 4.002 27 N -0.012 5.012 28 H 0.109 0.891 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.209 0.791 40 H 0.179 0.821 41 H 0.079 0.921 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.179 0.821 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.227 13.493 19.341 24.976 hybrid contribution -0.054 -0.118 -1.450 1.456 sum -8.281 13.375 17.891 23.823 Atomic orbital electron populations 1.22414 0.99184 0.98466 1.01502 1.20800 0.92514 0.84397 0.98362 1.44289 1.75217 1.09923 1.01575 1.19232 1.33850 1.02378 0.83605 0.90552 1.24664 0.97385 1.00206 0.97048 1.70250 1.23599 1.33683 1.25049 0.86497 0.82019 0.77839 0.82049 1.21581 1.22153 1.20540 1.20954 0.93634 0.94490 0.89477 1.22797 1.02398 0.95382 0.82704 1.45860 1.15323 1.49470 1.25598 1.15433 0.84725 0.79571 0.82428 1.90812 1.26606 1.66637 1.60003 1.19993 0.92665 1.08009 1.05009 1.23208 0.96971 0.95137 0.89357 1.70567 1.11173 1.14414 1.25913 1.20571 0.90954 0.97272 0.87427 1.19345 0.92247 1.01725 1.03553 1.18868 0.91055 0.89416 0.90179 1.86041 1.28532 1.56470 1.50561 1.23207 0.81114 1.01691 1.01180 1.21107 1.02876 1.02094 0.97778 1.21889 0.82666 0.95621 1.00000 1.42603 1.11126 1.27718 1.19709 0.89145 0.95997 0.96355 0.89930 0.97378 0.93659 0.92966 0.93698 0.91366 0.91405 0.76985 0.79054 0.82066 0.92101 0.87623 0.92079 0.82142 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.63 37.16 0.36 -3.21 16 2 C 0.16 3.83 5.65 -4.04 -0.02 3.81 16 3 N -0.59 -13.90 2.54 -173.24 -0.44 -14.34 16 4 C -0.26 -6.88 9.64 -15.06 -0.15 -7.02 16 5 H 0.08 1.98 8.00 -52.49 -0.42 1.56 16 6 C 0.01 0.15 4.70 -17.43 -0.08 0.07 16 7 N -0.88 -24.32 9.10 55.49 0.51 -23.81 16 8 Si 0.89 21.12 29.66 -169.99 -5.04 16.08 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.14 2.69 5.82 -4.04 -0.02 2.66 16 13 C 0.09 1.72 5.88 -4.04 -0.02 1.69 16 14 N -0.71 -10.54 5.53 -63.21 -0.35 -10.89 16 15 C 0.59 9.57 7.59 -14.96 -0.11 9.46 16 16 O -0.56 -10.93 15.35 5.10 0.08 -10.85 16 17 C -0.14 -2.03 6.83 -83.39 -0.57 -2.60 16 18 C 0.11 1.36 11.32 -17.24 -0.20 1.17 16 19 N -0.50 -6.74 11.25 -12.31 -0.14 -6.88 16 20 C 0.28 3.56 7.76 -156.00 -1.21 2.35 16 21 C -0.15 -1.54 10.09 -38.89 -0.39 -1.93 16 22 C 0.16 1.41 6.72 -38.72 -0.26 1.15 16 23 O -0.30 -2.32 10.49 -18.63 -0.20 -2.52 16 24 C 0.02 0.09 9.82 101.05 0.99 1.08 16 25 C -0.22 -1.78 8.99 -39.78 -0.36 -2.14 16 26 C 0.12 1.37 10.49 -16.84 -0.18 1.20 16 27 N -0.34 -4.51 2.97 -60.20 -0.18 -4.69 16 28 H 0.09 2.37 6.37 -51.93 -0.33 2.04 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.39 5.96 -51.93 -0.31 0.08 16 31 H 0.08 2.14 5.93 -51.93 -0.31 1.83 16 32 H 0.01 0.17 7.98 -51.93 -0.41 -0.25 16 33 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 35 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 36 H 0.07 1.41 5.91 -51.93 -0.31 1.10 16 37 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.40 4.44 7.26 -40.82 -0.30 4.15 16 39 H 0.19 1.57 7.37 -52.48 -0.39 1.19 16 40 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.06 0.17 7.68 -51.93 -0.40 -0.23 16 42 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.17 7.68 -51.93 -0.40 -0.22 16 44 H 0.16 0.78 6.39 -52.48 -0.34 0.44 16 45 H 0.18 2.07 6.79 -52.49 -0.36 1.72 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -33.15 369.24 -8.34 -41.48 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.92 Total: 3.12 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -2.22 Total: 7.73 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.60 Total: -60.62 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.12 Total: -13.37 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.15 -8.34 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663403634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.827 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds