Wall clock time and date at job start Sat Apr 11 2020 03:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47053 * 2 1 4 4 C 1.36942 * 119.99710 * 263.76425 * 3 2 1 5 5 H 1.07997 * 119.99366 * 185.85488 * 4 3 2 6 6 C 1.38807 * 120.00072 * 5.85614 * 4 3 2 7 7 N 1.31620 * 120.00103 * 33.06561 * 6 4 3 8 8 Si 1.86797 * 120.00059 * 213.06403 * 6 4 3 9 9 H 1.48493 * 109.47352 * 95.00193 * 8 6 4 10 10 H 1.48501 * 109.47039 * 215.00056 * 8 6 4 11 11 H 1.48502 * 109.47232 * 334.99905 * 8 6 4 12 12 C 1.46498 * 120.00185 * 83.76544 * 3 2 1 13 13 C 1.53001 * 109.46954 * 270.00103 * 12 3 2 14 14 N 1.46498 * 109.46954 * 180.02562 * 13 12 3 15 15 C 1.34772 * 120.00225 * 179.97438 * 14 13 12 16 16 O 1.21802 * 119.99858 * 5.08875 * 15 14 13 17 17 C 1.41651 * 120.00494 * 185.09013 * 15 14 13 18 18 C 1.38502 * 126.78547 * 354.85984 * 17 15 14 19 19 N 1.32326 * 108.25972 * 179.97438 * 18 17 15 20 20 C 1.33329 * 109.85216 * 0.02562 * 19 18 17 21 21 C 1.40334 * 131.73728 * 179.97438 * 20 19 18 22 22 C 1.37975 * 119.21670 * 180.02562 * 21 20 19 23 23 O 1.35642 * 120.33185 * 180.02562 * 22 21 20 24 24 C 1.42896 * 117.00166 * 179.97438 * 23 22 21 25 25 C 1.40762 * 119.33844 * 0.02562 * 22 21 20 26 26 C 1.35010 * 120.04167 * 0.02562 * 25 22 21 27 27 N 1.36034 * 120.85888 * 0.25498 * 26 25 22 28 28 H 1.09006 * 109.47273 * 60.00013 * 1 2 3 29 29 H 1.08998 * 109.47211 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47075 * 300.00390 * 1 2 3 31 31 H 1.08998 * 109.47075 * 239.99609 * 2 1 3 32 32 H 1.09001 * 109.46763 * 119.99477 * 2 1 3 33 33 H 0.96998 * 120.00374 * 179.97438 * 7 6 4 34 34 H 1.08991 * 109.47265 * 149.99861 * 12 3 2 35 35 H 1.09003 * 109.47267 * 29.99737 * 12 3 2 36 36 H 1.08998 * 109.47236 * 60.00169 * 13 12 3 37 37 H 1.09003 * 109.47163 * 299.99463 * 13 12 3 38 38 H 0.97008 * 120.00261 * 0.02562 * 14 13 12 39 39 H 1.08004 * 125.87343 * 0.03624 * 18 17 15 40 40 H 1.07997 * 120.39157 * 0.02795 * 21 20 19 41 41 H 1.08997 * 109.47169 * 60.00374 * 24 23 22 42 42 H 1.09001 * 109.47170 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.47368 * 299.99605 * 24 23 22 44 44 H 1.08005 * 119.97483 * 180.02562 * 25 22 21 45 45 H 1.07998 * 119.56567 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3680 1.9838 -1.1790 5 1 2.8162 2.9663 -1.1710 6 6 2.1463 1.3318 -2.3841 7 7 1.1067 0.5362 -2.5204 8 14 3.3233 1.5835 -3.8126 9 1 4.3352 0.4967 -3.8176 10 1 2.5649 1.5595 -5.0891 11 1 4.0055 2.8944 -3.6668 12 6 2.1326 2.1178 1.2612 13 6 0.8204 2.8522 1.5436 14 7 0.9349 3.5892 2.8044 15 6 -0.1062 4.3153 3.2575 16 8 -1.1720 4.2851 2.6686 17 6 0.0388 5.1135 4.4187 18 6 1.1456 5.1765 5.2489 19 7 0.8870 6.0373 6.2201 20 6 -0.3379 6.5405 6.0648 21 6 -1.0666 7.4742 6.8175 22 6 -2.3413 7.8161 6.4149 23 8 -3.0656 8.7165 7.1252 24 6 -4.3767 9.0187 6.6441 25 6 -2.8825 7.2212 5.2597 26 6 -2.1567 6.3253 4.5573 27 7 -0.9017 5.9804 4.9531 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9515 0.0808 -3.3627 34 1 2.9449 2.8407 1.1874 35 1 2.3400 1.4197 2.0722 36 1 0.0080 2.1292 1.6174 37 1 0.6130 3.5504 0.7326 38 1 1.7603 3.5553 3.3129 39 1 2.0626 4.6197 5.1244 40 1 -0.6348 7.9199 7.7014 41 1 -4.9763 8.1085 6.6273 42 1 -4.8457 9.7501 7.3023 43 1 -4.3086 9.4276 5.6360 44 1 -3.8792 7.4817 4.9350 45 1 -2.5797 5.8733 3.6724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663403634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:14:16 Heat of formation + Delta-G solvation = 30.822021 kcal Electronic energy + Delta-G solvation = -27697.438668 eV Core-core repulsion = 23717.351617 eV Total energy + Delta-G solvation = -3980.087050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.01762 -40.86174 -40.30832 -38.18083 -37.59656 -35.82690 -34.26366 -33.38398 -31.80097 -31.48258 -30.65674 -29.03358 -27.90694 -26.04003 -25.13745 -24.56485 -23.32421 -23.09310 -22.20408 -21.60048 -19.49998 -19.06287 -18.68063 -18.08783 -17.64216 -17.48324 -16.86520 -16.70069 -16.55243 -16.22448 -15.97873 -15.52864 -15.37765 -15.32038 -15.18007 -14.65806 -14.35598 -14.29141 -13.91772 -13.72533 -13.54327 -13.30355 -13.13421 -12.92018 -12.72050 -12.67932 -12.41030 -12.27022 -12.20122 -11.80912 -11.63949 -11.54405 -11.28610 -11.10024 -11.04612 -10.33253 -10.16344 -10.06448 -8.93571 -8.78469 -7.87469 -5.08835 -0.48877 -0.29702 1.14681 1.20224 1.49164 1.54041 1.60338 1.97085 2.26730 2.29948 2.33214 2.59501 3.20776 3.22460 3.33529 3.42405 3.72447 3.83113 3.85740 3.93613 4.24818 4.26742 4.31919 4.36570 4.41075 4.49335 4.68389 4.71748 4.74401 4.79415 4.84690 4.94845 5.07951 5.12295 5.14280 5.19982 5.28190 5.31925 5.48095 5.65886 5.74941 5.76546 6.10431 6.10825 6.32526 6.45677 6.60367 7.16764 7.19856 7.91946 8.31776 9.17393 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.002157 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.452471 B =12977.797468 C =13237.851421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.166 3.834 3 N -0.604 5.604 4 C -0.266 4.266 5 H 0.075 0.925 6 C -0.044 4.044 7 N -0.907 5.907 8 Si 0.945 3.055 9 H -0.289 1.289 10 H -0.303 1.303 11 H -0.273 1.273 12 C 0.144 3.856 13 C 0.116 3.884 14 N -0.698 5.698 15 C 0.592 3.408 16 O -0.602 6.602 17 C -0.181 4.181 18 C 0.131 3.869 19 N -0.525 5.525 20 C 0.271 3.729 21 C -0.163 4.163 22 C 0.173 3.827 23 O -0.312 6.312 24 C 0.009 3.991 25 C -0.192 4.192 26 C 0.097 3.903 27 N -0.348 5.348 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.247 0.753 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.031 0.969 38 H 0.416 0.584 39 H 0.227 0.773 40 H 0.174 0.826 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.073 0.927 44 H 0.198 0.802 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 14.730 21.336 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.041 3.959 3 N -0.325 5.325 4 C -0.395 4.395 5 H 0.093 0.907 6 C -0.240 4.240 7 N -0.552 5.552 8 Si 0.774 3.226 9 H -0.217 1.217 10 H -0.231 1.231 11 H -0.198 1.198 12 C 0.017 3.983 13 C -0.011 4.011 14 N -0.350 5.350 15 C 0.383 3.617 16 O -0.487 6.487 17 C -0.293 4.293 18 C -0.030 4.030 19 N -0.245 5.245 20 C 0.032 3.968 21 C -0.184 4.184 22 C 0.120 3.880 23 O -0.223 6.223 24 C -0.085 4.085 25 C -0.213 4.213 26 C -0.029 4.029 27 N -0.019 5.019 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.254 0.746 39 H 0.243 0.757 40 H 0.191 0.809 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.092 0.908 44 H 0.215 0.785 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.160 14.893 21.519 27.413 hybrid contribution -0.237 -0.354 -1.930 1.977 sum -8.396 14.540 19.589 25.799 Atomic orbital electron populations 1.22217 0.99135 0.98902 0.99966 1.20721 0.92495 0.84512 0.98211 1.44463 1.75313 1.10389 1.02379 1.19466 1.33059 1.02264 0.84748 0.90692 1.25282 0.98483 1.01005 0.99221 1.70387 1.24651 1.35005 1.25158 0.85583 0.79996 0.77774 0.79207 1.21661 1.23089 1.19830 1.21108 0.93634 0.95138 0.88398 1.22201 1.01511 0.94157 0.83235 1.45499 1.16151 1.48895 1.24496 1.15673 0.84074 0.79299 0.82669 1.90782 1.28284 1.68101 1.61501 1.19737 0.94207 1.09831 1.05476 1.23776 0.97266 0.94029 0.87881 1.70595 1.11778 1.15442 1.26716 1.20956 0.91098 0.97340 0.87386 1.19578 0.93024 1.01783 1.04021 1.18930 0.90634 0.88710 0.89771 1.86065 1.30122 1.55512 1.50569 1.23598 0.79351 1.03045 1.02492 1.21488 1.03691 0.99712 0.96378 1.22055 0.82712 0.97248 1.00841 1.42709 1.11655 1.27732 1.19846 0.92833 0.94550 0.95568 0.92845 0.94529 0.94320 0.91542 0.90632 0.93595 0.95038 0.74593 0.75684 0.80896 0.90768 0.85574 0.90809 0.78531 0.80840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.56 9.63 71.98 0.69 -5.87 16 2 C 0.17 7.67 5.65 86.38 0.49 8.16 16 3 N -0.60 -28.26 2.54 -702.01 -1.78 -30.04 16 4 C -0.27 -13.99 9.64 84.03 0.81 -13.18 16 5 H 0.08 3.89 8.00 -2.91 -0.02 3.86 16 6 C -0.04 -2.36 4.70 84.86 0.40 -1.96 16 7 N -0.91 -51.27 9.10 21.65 0.20 -51.07 16 8 Si 0.94 44.09 29.66 68.60 2.03 46.12 16 9 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 C 0.14 5.21 5.82 86.38 0.50 5.71 16 13 C 0.12 4.30 5.88 86.38 0.51 4.81 16 14 N -0.70 -20.25 5.53 -472.07 -2.61 -22.86 16 15 C 0.59 19.43 7.59 85.08 0.65 20.07 16 16 O -0.60 -24.44 15.35 -4.67 -0.07 -24.51 16 17 C -0.18 -5.05 6.83 38.97 0.27 -4.78 16 18 C 0.13 3.00 11.32 84.68 0.96 3.96 16 19 N -0.52 -13.60 11.25 -192.86 -2.17 -15.77 16 20 C 0.27 6.75 7.76 133.86 1.04 7.79 16 21 C -0.16 -3.17 10.09 22.72 0.23 -2.94 16 22 C 0.17 2.71 6.72 22.82 0.15 2.86 16 23 O -0.31 -3.83 10.49 -89.56 -0.94 -4.77 16 24 C 0.01 0.03 9.82 113.37 1.11 1.15 16 25 C -0.19 -2.75 8.99 22.14 0.20 -2.55 16 26 C 0.10 2.12 10.49 83.30 0.87 2.99 16 27 N -0.35 -9.17 2.97 -344.36 -1.02 -10.19 16 28 H 0.05 2.87 6.37 -2.38 -0.02 2.86 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.03 1.12 5.96 -2.39 -0.01 1.11 16 31 H 0.05 2.79 5.93 -2.39 -0.01 2.78 16 32 H 0.04 1.47 7.98 -2.39 -0.02 1.45 16 33 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 35 H 0.08 2.29 7.95 -2.39 -0.02 2.27 16 36 H 0.05 1.92 5.91 -2.39 -0.01 1.91 16 37 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 8.51 7.26 -92.70 -0.67 7.83 16 39 H 0.23 3.12 7.37 -2.91 -0.02 3.10 16 40 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 41 H 0.07 0.13 7.68 -2.39 -0.02 0.11 16 42 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.07 0.14 7.68 -2.39 -0.02 0.12 16 44 H 0.20 1.23 6.39 -2.91 -0.02 1.21 16 45 H 0.17 4.09 6.79 -2.91 -0.02 4.07 16 Total: -1.00 -74.31 369.24 2.87 -71.43 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.36 Total: 15.44 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 8.88 Total: 26.21 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -7.39 Total: -129.93 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.01 Total: -29.29 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.31 2.87 -71.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663403634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.256 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds