Wall clock time and date at job start Sat Apr 11 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 120.00052 * 2 1 4 4 C 1.52997 * 109.47389 * 84.99589 * 3 2 1 5 5 H 1.09007 * 109.49432 * 54.93371 * 4 3 2 6 6 C 1.53043 * 109.49647 * 174.99493 * 4 3 2 7 7 C 1.53045 * 109.53613 * 181.34928 * 6 4 3 8 8 C 1.53193 * 109.31211 * 298.63732 * 7 6 4 9 9 N 1.46927 * 108.77386 * 54.63774 * 8 7 6 10 10 C 1.34777 * 120.63303 * 126.36982 * 9 8 7 11 11 O 1.21283 * 120.00463 * 179.97438 * 10 9 8 12 12 C 1.50700 * 119.99675 * 359.72079 * 10 9 8 13 13 C 1.53004 * 109.47208 * 180.27843 * 12 10 9 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99720 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99854 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47118 * 90.00195 * 18 16 14 20 20 H 1.48507 * 109.46904 * 209.99852 * 18 16 14 21 21 H 1.48494 * 109.47201 * 330.00027 * 18 16 14 22 22 C 1.46925 * 118.74028 * 306.63705 * 9 8 7 23 23 S 1.65595 * 119.99738 * 179.97438 * 2 1 3 24 24 C 1.81399 * 104.45131 * 270.00220 * 23 2 1 25 25 O 1.42102 * 104.27970 * 26.07427 * 23 2 1 26 26 O 1.42099 * 104.27940 * 153.93136 * 23 2 1 27 27 H 1.09002 * 109.46755 * 90.00200 * 1 2 3 28 28 H 1.08994 * 109.47235 * 210.00185 * 1 2 3 29 29 H 1.09007 * 109.47072 * 330.00722 * 1 2 3 30 30 H 1.08997 * 109.46796 * 324.99129 * 3 2 1 31 31 H 1.09004 * 109.46671 * 204.99752 * 3 2 1 32 32 H 1.09001 * 109.45653 * 61.33198 * 6 4 3 33 33 H 1.08988 * 109.46264 * 301.37260 * 6 4 3 34 34 H 1.08996 * 109.49670 * 178.68970 * 7 6 4 35 35 H 1.09000 * 109.49698 * 58.59077 * 7 6 4 36 36 H 1.08997 * 109.59146 * 294.85081 * 8 7 6 37 37 H 1.08999 * 109.58394 * 174.42111 * 8 7 6 38 38 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 39 39 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 40 40 H 1.09000 * 109.46887 * 300.00372 * 13 12 10 41 41 H 1.08998 * 109.46846 * 59.99549 * 13 12 10 42 42 H 0.96999 * 120.00128 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.59194 * 173.14578 * 22 9 8 44 44 H 1.09004 * 109.59115 * 293.57214 * 22 9 8 45 45 H 1.08994 * 109.47207 * 59.99866 * 24 23 2 46 46 H 1.08996 * 109.47276 * 180.02562 * 24 23 2 47 47 H 1.09005 * 109.47147 * 300.00406 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7734 1.4369 5 1 2.8108 1.0010 2.0480 6 6 3.2146 3.0317 1.4504 7 6 3.3891 3.5180 2.8909 8 6 2.0182 3.8726 3.4755 9 7 1.1292 2.7114 3.3342 10 6 0.4806 2.2089 4.4034 11 8 -0.2509 1.2502 4.2736 12 6 0.6688 2.8347 5.7613 13 6 -0.1677 2.0754 6.7932 14 6 0.0200 2.7016 8.1511 15 1 0.6711 3.5555 8.2665 16 6 -0.6396 2.1843 9.2458 17 7 -0.4754 2.7305 10.4309 18 14 -1.7652 0.7070 9.0460 19 1 -0.9834 -0.5407 9.2393 20 1 -2.8514 0.7721 10.0566 21 1 -2.3556 0.7152 7.6835 22 6 0.9653 2.1047 2.0061 23 16 2.2929 -1.4341 0.0006 24 6 2.5192 -1.8254 1.7574 25 8 1.3969 -2.3564 -0.6042 26 8 3.5394 -1.1195 -0.6047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6502 2.0042 -0.5896 31 1 3.1858 1.1176 -0.4343 32 1 2.7348 3.8118 0.8593 33 1 4.1910 2.8021 1.0238 34 1 4.0286 4.4006 2.9020 35 1 3.8464 2.7293 3.4883 36 1 1.5991 4.7215 2.9354 37 1 2.1250 4.1247 4.5305 38 1 1.7213 2.7870 6.0408 39 1 0.3483 3.8760 5.7292 40 1 -1.2202 2.1231 6.5138 41 1 0.1528 1.0341 6.8254 42 1 -0.9397 2.3669 11.2010 43 1 0.3776 1.1907 2.0919 44 1 0.4585 2.8065 1.3437 45 1 1.5450 -1.9178 2.2375 46 1 3.0624 -2.7655 1.8532 47 1 3.0865 -1.0278 2.2372 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360600607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:48 Heat of formation + Delta-G solvation = -139.406504 kcal Electronic energy + Delta-G solvation = -27986.166511 eV Core-core repulsion = 24101.848999 eV Total energy + Delta-G solvation = -3884.317513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27641 -39.12283 -38.26772 -37.20414 -36.93979 -35.58260 -34.05376 -33.24001 -32.11293 -30.38953 -29.08648 -27.91403 -26.14825 -25.41295 -23.18376 -23.02822 -21.26861 -19.94916 -19.79806 -19.07728 -18.62409 -17.87271 -17.43827 -17.35439 -16.75155 -16.62267 -16.27058 -15.91509 -15.41245 -15.24971 -14.97076 -14.73692 -14.66300 -14.42622 -14.13495 -14.12103 -13.96618 -13.77970 -13.65900 -13.52073 -13.32182 -13.26358 -13.13166 -12.91642 -12.59442 -12.52014 -12.18237 -12.00538 -11.99333 -11.93514 -11.79521 -11.72538 -11.67379 -11.38252 -11.34653 -10.78838 -10.67717 -9.96846 -9.55731 -8.32192 -6.34996 -0.76571 1.31946 1.34471 1.48896 1.59542 1.67686 2.08390 2.33995 2.82320 3.03644 3.10307 3.60396 3.67337 3.81668 3.87673 3.98395 4.03625 4.10582 4.14883 4.30544 4.35052 4.42350 4.45627 4.55098 4.62471 4.67667 4.73203 4.79796 4.86648 4.89105 4.95968 5.00658 5.02081 5.08044 5.12780 5.21278 5.32198 5.32763 5.43373 5.49077 5.59314 5.60444 5.68242 6.22768 6.42675 6.71484 7.25396 7.30504 8.83485 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.003181 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.319340 B = 8800.265601 C = 9942.193210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.001 6.001 3 C 0.121 3.879 4 C -0.125 4.125 5 H 0.065 0.935 6 C -0.110 4.110 7 C -0.132 4.132 8 C 0.096 3.904 9 N -0.611 5.611 10 C 0.513 3.487 11 O -0.584 6.584 12 C -0.115 4.115 13 C 0.007 3.993 14 C -0.528 4.528 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.261 1.261 22 C 0.105 3.895 23 S 2.623 3.377 24 C -0.667 4.667 25 O -0.991 6.991 26 O -0.982 6.982 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.267 0.733 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.131 0.869 46 H 0.143 0.857 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -0.201 -25.200 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.839 5.839 3 C -0.004 4.004 4 C -0.146 4.146 5 H 0.084 0.916 6 C -0.148 4.148 7 C -0.170 4.170 8 C -0.026 4.026 9 N -0.344 5.344 10 C 0.302 3.698 11 O -0.465 6.465 12 C -0.154 4.154 13 C -0.031 4.031 14 C -0.566 4.566 15 H 0.068 0.932 16 C -0.184 4.184 17 N -0.584 5.584 18 Si 0.762 3.238 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.185 1.185 22 C -0.017 4.017 23 S 2.718 3.282 24 C -0.819 4.819 25 O -0.981 6.981 26 O -0.973 6.973 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.150 0.850 46 H 0.162 0.838 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.825 -1.172 -25.884 27.372 hybrid contribution -0.741 -0.585 1.471 1.748 sum 8.083 -1.757 -24.413 25.776 Atomic orbital electron populations 1.21756 0.77675 1.03874 1.02980 1.57276 1.15522 1.21262 1.89835 1.21603 0.98509 0.84846 0.95468 1.22048 0.95987 0.99448 0.97128 0.91632 1.21531 1.00362 0.96125 0.96758 1.21914 0.95904 1.02668 0.96507 1.22059 0.90135 0.87236 1.03173 1.48254 1.45977 1.32344 1.07830 1.21152 0.78710 0.82836 0.87054 1.90610 1.40082 1.29498 1.86301 1.21492 1.02619 1.01099 0.90231 1.19208 0.95547 0.95333 0.92996 1.21427 1.27495 1.15273 0.92417 0.93181 1.25793 0.97971 0.99697 0.94893 1.70021 1.44926 1.43252 1.00204 0.85847 0.79336 0.80152 0.78487 1.19427 1.20408 1.18519 1.21883 0.97719 0.99377 0.82680 1.04323 0.72907 0.72964 0.77966 1.30544 1.12730 1.13342 1.25283 1.93561 1.65380 1.63926 1.75269 1.93545 1.45184 1.83407 1.75120 0.91406 0.91389 0.89585 0.87351 0.87825 0.89531 0.89806 0.88203 0.92593 0.89271 0.89582 0.88440 0.88374 0.97268 0.97465 0.92389 0.90143 0.89755 0.85025 0.83842 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 9.34 127.77 1.19 2.37 16 2 N -1.00 -14.79 3.03 -539.12 -1.63 -16.43 16 3 C 0.12 1.36 5.19 86.38 0.45 1.81 16 4 C -0.13 -1.64 2.53 -10.86 -0.03 -1.67 16 5 H 0.07 0.99 6.85 -2.38 -0.02 0.98 16 6 C -0.11 -1.02 5.17 30.62 0.16 -0.86 16 7 C -0.13 -1.56 6.08 30.67 0.19 -1.37 16 8 C 0.10 1.55 6.35 86.36 0.55 2.10 16 9 N -0.61 -14.14 2.98 -819.73 -2.44 -16.58 16 10 C 0.51 17.29 7.70 87.66 0.67 17.96 16 11 O -0.58 -24.15 15.40 -3.04 -0.05 -24.20 16 12 C -0.11 -4.22 3.98 29.85 0.12 -4.10 16 13 C 0.01 0.35 3.33 29.85 0.10 0.45 16 14 C -0.53 -30.02 9.66 25.60 0.25 -29.77 16 15 H 0.05 2.99 7.99 -2.91 -0.02 2.97 16 16 C 0.01 0.83 5.47 84.65 0.46 1.30 16 17 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 18 Si 0.94 46.19 27.47 68.60 1.88 48.08 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 22 C 0.11 1.91 4.34 86.22 0.37 2.28 16 23 S 2.62 46.74 6.02 -56.49 -0.34 46.40 16 24 C -0.67 -9.39 10.99 113.37 1.25 -8.14 16 25 O -0.99 -24.47 17.09 -127.65 -2.18 -26.65 16 26 O -0.98 -21.90 16.53 -127.65 -2.11 -24.01 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.03 7.79 -2.39 -0.02 1.02 16 29 H 0.09 1.11 5.45 -2.38 -0.01 1.10 16 30 H 0.11 0.78 8.11 -2.39 -0.02 0.77 16 31 H 0.10 1.16 6.82 -2.38 -0.02 1.15 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 1.54 5.93 -2.39 -0.01 1.53 16 38 H 0.10 3.29 7.69 -2.38 -0.02 3.27 16 39 H 0.10 3.31 7.94 -2.39 -0.02 3.30 16 40 H 0.01 0.46 7.16 -2.39 -0.02 0.44 16 41 H 0.01 0.35 7.53 -2.39 -0.02 0.34 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.08 1.78 4.88 -2.39 -0.01 1.77 16 44 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 45 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.14 1.73 6.85 -2.39 -0.02 1.72 16 Total: -1.00 -81.71 375.87 0.06 -81.65 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 0.90 Total: 7.60 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 5.73 Total: -17.64 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -3.78 Total: -91.21 kcal Atomic # 8 Polarization: -70.52 SS G_CDS: -4.34 Total: -74.86 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.08 kcal Atomic # 16 Polarization: 46.74 SS G_CDS: -0.34 Total: 46.40 kcal Total: -81.71 0.06 -81.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360600607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.760 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds