Wall clock time and date at job start Sat Apr 11 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34885 * 120.30440 * 2 1 4 4 C 1.38052 * 119.94649 * 180.29108 * 3 2 1 5 5 C 1.47579 * 119.72360 * 179.69840 * 4 3 2 6 6 O 1.21583 * 120.00106 * 359.72447 * 5 4 3 7 7 N 1.34770 * 119.99576 * 179.72515 * 5 4 3 8 8 C 1.44221 * 115.76430 * 359.97438 * 7 5 4 9 9 C 1.51864 * 112.74934 * 186.22633 * 8 7 5 10 10 C 1.50987 * 111.88619 * 324.22132 * 9 8 7 11 11 H 1.09001 * 108.32310 * 180.27172 * 10 9 8 12 12 C 1.53982 * 111.97723 * 60.08109 * 10 9 8 13 13 H 1.08997 * 112.41699 * 75.67904 * 12 10 9 14 14 C 1.56267 * 99.75731 * 195.21952 * 12 10 9 15 15 C 1.54644 * 102.20602 * 38.87640 * 14 12 10 16 16 N 1.46661 * 113.21396 * 301.26188 * 10 9 8 17 17 C 1.36938 * 126.19820 * 330.13757 * 16 10 9 18 18 H 1.07999 * 119.99862 * 359.97438 * 17 16 10 19 19 C 1.38812 * 120.00039 * 179.97438 * 17 16 10 20 20 N 1.31625 * 119.99825 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99806 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47108 * 60.00046 * 21 19 17 23 23 H 1.48504 * 109.46722 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47185 * 299.99403 * 21 19 17 25 25 C 1.43527 * 115.76319 * 180.02562 * 7 5 4 26 26 N 1.34153 * 120.54546 * 359.41834 * 4 3 2 27 27 C 1.30607 * 120.62997 * 0.27697 * 26 4 3 28 28 C 1.34959 * 120.31414 * 179.71177 * 2 1 3 29 29 O 1.21853 * 120.26455 * 0.03166 * 28 2 1 30 30 H 1.09004 * 109.46587 * 180.28717 * 1 2 3 31 31 H 1.09002 * 109.47501 * 300.28202 * 1 2 3 32 32 H 1.08997 * 109.47492 * 60.28665 * 1 2 3 33 33 H 1.07993 * 120.02612 * 359.97438 * 3 2 1 34 34 H 1.09003 * 108.82833 * 65.39024 * 8 7 5 35 35 H 1.08996 * 108.82722 * 307.07263 * 8 7 5 36 36 H 1.08993 * 109.00183 * 203.59622 * 9 8 7 37 37 H 1.09003 * 108.92922 * 84.79401 * 9 8 7 38 38 H 1.08998 * 110.85484 * 157.05426 * 14 12 10 39 39 H 1.08996 * 110.85860 * 280.69333 * 14 12 10 40 40 H 1.09000 * 109.96703 * 95.28438 * 15 14 12 41 41 H 1.08994 * 109.96820 * 216.51339 * 15 14 12 42 42 H 0.97000 * 119.99299 * 180.02562 * 20 19 17 43 43 H 1.09003 * 108.16500 * 58.82972 * 25 7 5 44 44 H 1.09000 * 108.16360 * 302.24355 * 25 7 5 45 45 H 1.07997 * 119.98370 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1456 1.1645 0.0000 4 6 3.5261 1.1559 -0.0061 5 6 4.2658 2.4329 -0.0128 6 8 3.6593 3.4867 -0.0180 7 7 5.6135 2.4310 -0.0131 8 6 6.2384 1.1312 -0.0061 9 6 7.7477 1.2061 0.1450 10 6 8.3264 2.4021 -0.5722 11 1 9.4072 2.3966 -0.4306 12 6 7.7579 3.7278 -0.0334 13 1 8.1866 4.0028 0.9303 14 6 8.1967 4.6909 -1.1831 15 6 7.9688 3.8223 -2.4421 16 7 8.0335 2.4120 -2.0092 17 6 7.8530 1.3126 -2.8053 18 1 7.9234 0.3217 -2.3816 19 6 7.5794 1.4717 -4.1569 20 7 7.4931 2.6794 -4.6731 21 14 7.3338 -0.0281 -5.2430 22 1 6.1871 -0.8239 -4.7361 23 1 7.0558 0.4089 -6.6348 24 1 8.5627 -0.8614 -5.2215 25 6 6.2392 3.7226 -0.0193 26 7 4.2007 -0.0036 -0.0003 27 6 3.5639 -1.1439 0.0058 28 6 2.1462 -1.1651 0.0059 29 8 1.5476 -2.2264 0.0106 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5093 -0.8925 33 1 1.6111 2.1029 -0.0004 34 1 6.0034 0.6228 -0.9412 35 1 5.8306 0.5493 0.8204 36 1 8.1908 0.2983 -0.2643 37 1 7.9940 1.2743 1.2046 38 1 7.5668 5.5802 -1.2060 39 1 9.2478 4.9611 -1.0830 40 1 6.9891 4.0359 -2.8693 41 1 8.7474 4.0223 -3.1781 42 1 7.3015 2.7906 -5.6175 43 1 5.9052 4.2663 0.8644 44 1 5.8898 4.2652 -0.8977 45 1 4.1175 -2.0712 0.0100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036775889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:54 Heat of formation + Delta-G solvation = 21.583286 kcal Electronic energy + Delta-G solvation = -30252.273148 eV Core-core repulsion = 26271.785476 eV Total energy + Delta-G solvation = -3980.487672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06689 -41.61053 -39.78090 -38.55226 -37.26071 -36.33879 -34.64204 -33.34381 -31.87698 -31.07555 -29.78006 -29.00082 -26.92350 -26.21563 -25.51792 -24.58483 -24.00407 -21.93497 -21.63631 -19.83493 -19.54617 -18.71277 -18.14469 -18.09044 -17.68420 -17.23922 -17.08480 -16.61329 -16.50472 -15.90085 -15.70906 -15.60029 -15.14833 -15.06050 -14.56947 -14.47439 -14.32675 -13.98129 -13.89611 -13.61804 -13.45520 -13.16031 -13.05137 -12.98360 -12.67281 -12.58015 -12.27447 -12.17253 -12.04420 -11.95624 -11.49869 -11.46548 -11.34037 -11.22944 -11.11818 -10.63042 -10.13011 -9.57303 -9.15683 -8.77244 -7.76864 -5.07754 -0.59878 0.07691 1.16112 1.44294 1.45971 1.51121 1.72690 2.15933 2.52764 2.57636 2.99507 3.07505 3.42664 3.48094 3.60519 3.77593 3.85306 3.93029 4.08722 4.10934 4.18989 4.31205 4.32164 4.39844 4.60199 4.61929 4.67202 4.68179 4.73481 4.85213 4.88057 4.91947 5.08884 5.15670 5.23914 5.29083 5.34753 5.44818 5.49993 5.63161 5.71752 5.83333 5.88230 6.26974 6.30943 6.44080 6.56741 7.16713 7.17520 7.88110 8.55192 9.35011 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011466 B = 0.004938 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.435414 B = 5668.613027 C = 6953.405114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.475 5.475 3 C 0.197 3.803 4 C -0.096 4.096 5 C 0.564 3.436 6 O -0.580 6.580 7 N -0.563 5.563 8 C 0.146 3.854 9 C -0.128 4.128 10 C 0.158 3.842 11 H 0.029 0.971 12 C -0.097 4.097 13 H 0.127 0.873 14 C -0.129 4.129 15 C 0.186 3.814 16 N -0.606 5.606 17 C -0.204 4.204 18 H 0.086 0.914 19 C -0.071 4.071 20 N -0.955 5.955 21 Si 0.960 3.040 22 H -0.282 1.282 23 H -0.304 1.304 24 H -0.275 1.275 25 C 0.145 3.855 26 N -0.371 5.371 27 C 0.025 3.975 28 C 0.472 3.528 29 O -0.554 6.554 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.212 0.788 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.239 0.761 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -2.107 15.488 18.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.184 5.184 3 C 0.060 3.940 4 C -0.220 4.220 5 C 0.352 3.648 6 O -0.462 6.462 7 N -0.290 5.290 8 C 0.024 3.976 9 C -0.166 4.166 10 C 0.051 3.949 11 H 0.047 0.953 12 C -0.117 4.117 13 H 0.145 0.855 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.332 5.332 17 C -0.333 4.333 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.606 5.606 21 Si 0.790 3.210 22 H -0.209 1.209 23 H -0.230 1.230 24 H -0.202 1.202 25 C 0.022 3.978 26 N -0.087 5.087 27 C -0.163 4.163 28 C 0.270 3.730 29 O -0.433 6.433 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.229 0.771 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.605 -2.115 15.268 18.161 hybrid contribution -0.830 -0.622 -1.662 1.959 sum -10.435 -2.738 13.606 17.363 Atomic orbital electron populations 1.22749 0.73252 1.07026 1.06776 1.45696 1.11815 1.06132 1.54728 1.23333 0.92646 0.91879 0.86118 1.20244 0.90705 0.92755 1.18257 1.17731 0.82769 0.87149 0.77131 1.90716 1.68933 1.32531 1.54040 1.46344 1.05606 1.07708 1.69350 1.21220 0.92646 0.81470 1.02267 1.21378 0.95008 0.99161 1.01070 1.20538 0.96546 0.93949 0.83848 0.95311 1.22493 0.92993 0.96632 0.99538 0.85506 1.23200 1.01608 0.97410 0.94564 1.21000 0.96788 0.83423 0.92736 1.44596 1.82950 1.01779 1.03839 1.19231 1.38063 0.86548 0.89453 0.89595 1.25446 1.03986 0.98430 0.98477 1.70174 1.57877 1.21043 1.11512 0.85409 0.78180 0.79601 0.77815 1.20894 1.23041 1.20152 1.20301 0.93699 0.83065 1.00687 1.68579 1.38964 0.98069 1.03054 1.25188 0.89427 0.98394 1.03310 1.18948 0.91145 0.83535 0.79379 1.90911 1.71142 1.29021 1.52180 0.88267 0.86348 0.87275 0.77141 0.93259 0.88363 0.91232 0.89024 0.90584 0.90264 0.98061 0.97985 0.95144 0.91232 0.94976 0.77339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.64 127.77 1.36 1.80 16 2 N -0.48 -9.13 2.97 -671.22 -2.00 -11.13 16 3 C 0.20 4.13 9.96 84.18 0.84 4.96 16 4 C -0.10 -2.76 6.56 41.21 0.27 -2.48 16 5 C 0.56 19.64 7.49 86.71 0.65 20.29 16 6 O -0.58 -21.93 15.85 -3.98 -0.06 -21.99 16 7 N -0.56 -19.89 3.19 -842.89 -2.69 -22.58 16 8 C 0.15 4.86 4.14 86.43 0.36 5.21 16 9 C -0.13 -4.00 5.10 29.56 0.15 -3.85 16 10 C 0.16 5.81 2.93 44.64 0.13 5.94 16 11 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 12 C -0.10 -3.05 3.80 -9.70 -0.04 -3.08 16 13 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 14 C -0.13 -4.56 6.14 32.29 0.20 -4.36 16 15 C 0.19 9.12 4.82 86.72 0.42 9.54 16 16 N -0.61 -29.37 3.04 -673.32 -2.05 -31.42 16 17 C -0.20 -10.89 8.84 84.03 0.74 -10.14 16 18 H 0.09 4.36 6.89 -2.91 -0.02 4.34 16 19 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 20 N -0.96 -58.64 10.41 21.65 0.23 -58.41 16 21 Si 0.96 46.64 29.55 68.60 2.03 48.67 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 C 0.15 5.04 4.61 86.56 0.40 5.44 16 26 N -0.37 -10.44 5.40 -183.46 -0.99 -11.43 16 27 C 0.03 0.62 11.23 85.75 0.96 1.58 16 28 C 0.47 11.66 7.46 85.09 0.63 12.29 16 29 O -0.55 -16.24 16.49 -4.84 -0.08 -16.32 16 30 H 0.10 1.31 6.94 -2.38 -0.02 1.30 16 31 H 0.12 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.21 3.31 7.58 -2.91 -0.02 3.29 16 34 H 0.05 1.98 6.45 -2.39 -0.02 1.97 16 35 H 0.10 2.83 6.14 -2.39 -0.01 2.82 16 36 H 0.07 2.27 7.36 -2.39 -0.02 2.25 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.08 2.47 7.81 -2.39 -0.02 2.45 16 39 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.00 0.06 7.13 -2.39 -0.02 0.05 16 41 H 0.00 0.11 7.58 -2.39 -0.02 0.09 16 42 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.07 2.13 8.04 -2.39 -0.02 2.11 16 44 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 45 H 0.21 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -77.34 351.14 2.94 -74.40 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.01 Total: 10.68 kcal Atomic # 6 Polarization: 31.98 SS G_CDS: 7.54 Total: 39.53 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -7.50 Total: -134.97 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.14 Total: -38.31 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -77.34 2.94 -74.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036775889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.983 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds