Wall clock time and date at job start Sat Apr 11 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99755 * 2 1 4 4 O 1.21548 * 120.00175 * 182.15408 * 3 2 1 5 5 C 1.47907 * 119.99692 * 2.16308 * 3 2 1 6 6 C 1.39437 * 120.02186 * 172.83622 * 5 3 2 7 7 N 1.32052 * 119.95403 * 179.70204 * 6 5 3 8 8 C 1.32612 * 120.01013 * 0.54137 * 7 6 5 9 9 O 1.35487 * 119.97404 * 179.72347 * 8 7 6 10 10 C 1.42898 * 116.99968 * 359.73198 * 9 8 7 11 11 C 1.53000 * 109.46958 * 179.97438 * 10 9 8 12 12 C 1.52992 * 117.51833 * 116.28679 * 11 10 9 13 13 C 1.52998 * 60.00431 * 107.47914 * 12 11 10 14 14 C 1.39590 * 120.05078 * 359.45744 * 8 7 6 15 15 N 1.31560 * 120.03889 * 0.26821 * 14 8 7 16 16 C 1.46495 * 120.00644 * 179.97438 * 2 1 3 17 17 C 1.53953 * 113.74041 * 38.74440 * 16 2 1 18 18 N 1.47809 * 86.03452 * 222.08571 * 17 16 2 19 19 C 1.36938 * 134.45305 * 204.63774 * 18 17 16 20 20 H 1.08000 * 119.99977 * 179.86760 * 19 18 17 21 21 C 1.38818 * 120.00247 * 359.87230 * 19 18 17 22 22 N 1.31619 * 119.99427 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00083 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46968 * 60.00173 * 23 21 19 25 25 H 1.48502 * 109.46974 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47654 * 299.99918 * 23 21 19 27 27 C 1.47579 * 91.05580 * 24.54811 * 18 17 16 28 28 H 1.09003 * 109.46897 * 83.79985 * 1 2 3 29 29 H 1.09001 * 109.46669 * 203.79779 * 1 2 3 30 30 H 1.08990 * 109.47384 * 323.79738 * 1 2 3 31 31 H 1.08001 * 120.02570 * 359.94854 * 6 5 3 32 32 H 1.09005 * 109.47188 * 59.99994 * 10 9 8 33 33 H 1.09001 * 109.47060 * 299.99716 * 10 9 8 34 34 H 1.09001 * 115.55288 * 330.58231 * 11 10 9 35 35 H 1.09005 * 117.50200 * 214.97148 * 12 11 10 36 36 H 1.09004 * 117.49851 * 359.97438 * 12 11 10 37 37 H 1.08996 * 117.49682 * 252.51332 * 13 12 11 38 38 H 1.08999 * 117.49740 * 107.48624 * 13 12 11 39 39 H 1.07997 * 119.97862 * 180.24995 * 14 8 7 40 40 H 1.09001 * 112.95164 * 170.32957 * 16 2 1 41 41 H 1.09007 * 113.76589 * 336.34539 * 17 16 2 42 42 H 1.08998 * 113.77029 * 107.74227 * 17 16 2 43 43 H 0.97001 * 119.99200 * 179.97438 * 22 21 19 44 44 H 1.08994 * 113.76823 * 221.15396 * 27 18 17 45 45 H 1.09003 * 113.76825 * 89.75420 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3537 1.1677 -0.0396 5 6 1.4000 2.4476 0.0483 6 6 2.0934 3.6480 0.1990 7 7 1.4328 4.7908 0.2361 8 6 0.1101 4.7958 0.1409 9 8 -0.5673 5.9683 0.1847 10 6 0.2068 7.1593 0.3408 11 6 -0.7245 8.3729 0.3678 12 6 -0.7730 9.1981 1.6552 13 6 -0.0778 9.7588 0.4130 14 6 -0.5844 3.5943 -0.0099 15 7 0.0721 2.4550 -0.0526 16 6 2.1976 -1.2686 0.0006 17 6 1.5558 -2.3554 -0.8809 18 7 1.8613 -3.2877 0.2246 19 6 2.0641 -4.6392 0.3110 20 1 2.2811 -5.0927 1.2668 21 6 1.9909 -5.4265 -0.8300 22 7 1.7260 -4.8738 -1.9948 23 14 2.2683 -7.2699 -0.7123 24 1 1.2585 -7.8652 0.1996 25 1 2.1371 -7.8774 -2.0610 26 1 3.6302 -7.5328 -0.1820 27 6 1.8622 -2.1775 1.1969 28 1 -0.3633 0.1110 -1.0217 29 1 -0.3633 -0.9403 0.4147 30 1 -0.3633 0.8292 0.6069 31 1 3.1702 3.6434 0.2813 32 1 0.9013 7.2533 -0.4941 33 1 0.7662 7.1092 1.2750 34 1 -1.6503 8.2678 -0.1978 35 1 -1.7308 9.6359 1.9367 36 1 -0.1416 8.8763 2.4834 37 1 1.0111 9.8059 0.4239 38 1 -0.5781 10.5654 -0.1228 39 1 -1.6613 3.6001 -0.0914 40 1 3.2670 -1.1419 -0.1681 41 1 0.4889 -2.2099 -1.0507 42 1 2.1093 -2.5617 -1.7969 43 1 1.6752 -5.4239 -2.7922 44 1 2.6600 -2.2422 1.9368 45 1 0.8856 -1.9797 1.6388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044176270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:50 Heat of formation + Delta-G solvation = 88.734307 kcal Electronic energy + Delta-G solvation = -27436.097118 eV Core-core repulsion = 23458.521333 eV Total energy + Delta-G solvation = -3977.575785 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74524 -39.87991 -38.97657 -37.60949 -37.24783 -35.02909 -33.93031 -32.02302 -31.30327 -28.36030 -27.67040 -26.61164 -25.05808 -24.87716 -24.79410 -23.01636 -22.91436 -21.27163 -20.63103 -19.08568 -18.71143 -18.19826 -17.01618 -16.87145 -16.83034 -16.37643 -15.92910 -15.49737 -15.17602 -14.88610 -14.75561 -14.66744 -14.12067 -13.83561 -13.75555 -13.32606 -12.97427 -12.78506 -12.38122 -12.28357 -12.02166 -11.87300 -11.80838 -11.53069 -11.45315 -11.28642 -11.08017 -10.99478 -10.87821 -10.70428 -10.53009 -10.29381 -10.12344 -10.03216 -9.55133 -9.23806 -9.07535 -8.79160 -8.11147 -6.90852 -5.78073 -3.11034 0.24807 0.69406 2.28472 2.71476 3.12685 3.22779 3.40863 3.44606 3.45918 3.57183 3.64678 3.83751 4.05630 4.22797 4.31786 4.43889 4.47633 4.63914 4.68164 4.88305 4.97432 5.05946 5.10736 5.19165 5.22150 5.34299 5.47889 5.50124 5.53802 5.56138 5.66809 5.69952 6.01270 6.05457 6.16742 6.31301 6.46071 6.57424 6.60397 6.74808 6.81700 7.19593 7.25216 7.36592 7.51774 7.71980 7.95487 8.30947 9.02647 9.68867 10.55715 11.39085 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.045557 B = 0.001885 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.463701 B =14846.785857 C =15060.604881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.575 5.575 3 C 0.570 3.430 4 O -0.540 6.540 5 C -0.009 4.009 6 C 0.157 3.843 7 N -0.503 5.503 8 C 0.292 3.708 9 O -0.292 6.292 10 C 0.098 3.902 11 C -0.161 4.161 12 C -0.176 4.176 13 C -0.168 4.168 14 C 0.039 3.961 15 N -0.366 5.366 16 C 0.086 3.914 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.915 3.085 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.110 3.890 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.187 0.813 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.183 0.817 40 H 0.118 0.882 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.255 0.745 44 H 0.048 0.952 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 28.159 4.905 29.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.305 5.305 3 C 0.356 3.644 4 O -0.418 6.418 5 C -0.148 4.148 6 C -0.003 4.003 7 N -0.232 5.232 8 C 0.109 3.891 9 O -0.196 6.196 10 C 0.023 3.977 11 C -0.179 4.179 12 C -0.213 4.213 13 C -0.205 4.205 14 C -0.127 4.127 15 N -0.084 5.084 16 C -0.017 4.017 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.745 3.255 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.017 4.017 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.204 0.796 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.200 0.800 40 H 0.135 0.865 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.356 27.851 4.724 28.955 hybrid contribution 0.015 -0.884 0.013 0.884 sum -6.341 26.967 4.737 28.105 Atomic orbital electron populations 1.22310 0.78520 1.03203 1.02655 1.47957 1.07911 1.05537 1.69066 1.17547 0.86479 0.82529 0.77891 1.90789 1.12629 1.86667 1.51686 1.22169 0.90674 0.96365 1.05551 1.23530 1.01965 0.85470 0.89290 1.68250 1.07138 1.30481 1.17352 1.21280 0.89001 0.87814 0.91054 1.86213 1.35125 1.12459 1.85814 1.22270 0.92515 0.80226 1.02663 1.22152 1.01996 0.90663 1.03137 1.23124 1.02903 1.03497 0.91742 1.23001 1.00584 0.95192 1.01683 1.23182 1.02288 0.85071 1.02158 1.69053 1.07735 1.25761 1.05816 1.24180 0.98128 0.79555 0.99817 1.22673 0.97026 0.83256 0.93819 1.45690 1.82000 1.02178 1.03383 1.18946 1.41661 0.80209 0.94324 0.90080 1.24805 1.01887 0.98269 0.95352 1.69808 1.54439 1.34427 0.98035 0.86161 0.78091 0.84604 0.76653 1.21150 1.21530 1.21001 1.22968 0.98161 0.87199 0.93421 0.92431 0.91217 0.88649 0.79630 0.90689 0.90996 0.86456 0.88302 0.88439 0.88329 0.88053 0.79982 0.86453 0.94812 0.90444 0.93489 0.93407 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 8.02 59.85 0.48 1.58 16 2 N -0.57 -9.83 3.09 -176.84 -0.55 -10.38 16 3 C 0.57 9.48 7.65 -12.30 -0.09 9.39 16 4 O -0.54 -10.29 15.83 5.32 0.08 -10.21 16 5 C -0.01 -0.12 6.61 -82.88 -0.55 -0.66 16 6 C 0.16 1.85 10.76 -17.01 -0.18 1.67 16 7 N -0.50 -5.57 9.37 -12.76 -0.12 -5.69 16 8 C 0.29 2.97 7.50 -16.71 -0.13 2.84 16 9 O -0.29 -2.63 10.12 -18.15 -0.18 -2.81 16 10 C 0.10 0.73 5.60 37.16 0.21 0.94 16 11 C -0.16 -0.94 6.06 -90.62 -0.55 -1.49 16 12 C -0.18 -0.87 10.18 -26.74 -0.27 -1.14 16 13 C -0.17 -0.76 10.25 -26.73 -0.27 -1.04 16 14 C 0.04 0.37 11.18 -17.16 -0.19 0.18 16 15 N -0.37 -4.36 6.20 -9.49 -0.06 -4.42 16 16 C 0.09 1.75 4.40 -70.14 -0.31 1.44 16 17 C 0.16 3.76 6.93 -2.84 -0.02 3.74 16 18 N -0.61 -15.68 3.70 -177.88 -0.66 -16.34 16 19 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.32 11.39 55.49 0.63 -26.69 16 23 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.11 2.30 8.43 -2.97 -0.03 2.28 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.07 6.12 -51.93 -0.32 0.75 16 30 H 0.10 1.22 5.25 -52.05 -0.27 0.95 16 31 H 0.19 1.99 7.65 -52.49 -0.40 1.59 16 32 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 33 H 0.07 0.54 7.85 -51.93 -0.41 0.13 16 34 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.12 2.54 7.21 -51.93 -0.37 2.17 16 41 H 0.03 0.79 6.69 -51.93 -0.35 0.45 16 42 H 0.08 2.06 7.17 -51.93 -0.37 1.69 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.04 0.73 6.94 -51.93 -0.36 0.37 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -32.63 374.43 -8.59 -41.22 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.20 Total: -0.45 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -2.16 Total: 12.97 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.75 Total: -63.51 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.10 Total: -13.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.63 -8.59 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044176270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.955 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds