Wall clock time and date at job start Sat Apr 11 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00005 * 2 1 4 4 C 1.46894 * 111.00351 * 123.95907 * 2 1 3 5 5 C 1.52991 * 109.47165 * 66.04291 * 4 2 1 6 6 C 1.52999 * 109.47314 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47379 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00029 * 269.99923 * 7 6 5 9 9 C 1.50701 * 109.47515 * 270.00037 * 8 7 6 10 10 H 1.08007 * 119.99572 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00611 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00634 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99759 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47010 * 90.00027 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99838 * 13 11 9 16 16 H 1.48491 * 109.47225 * 330.00102 * 13 11 9 17 17 C 1.34777 * 119.99954 * 90.00421 * 7 6 5 18 18 O 1.21280 * 120.00069 * 359.97438 * 17 7 6 19 19 C 1.50706 * 120.00107 * 180.02562 * 17 7 6 20 20 C 1.52989 * 109.47268 * 179.97438 * 19 17 7 21 21 C 1.53046 * 113.15245 * 275.37017 * 20 19 17 22 22 S 1.81421 * 89.89146 * 211.85103 * 21 20 19 23 23 O 1.42100 * 112.75626 * 280.47671 * 22 21 20 24 24 O 1.42102 * 112.75037 * 136.72699 * 22 21 20 25 25 C 1.53046 * 113.15293 * 174.99935 * 20 19 17 26 26 H 1.09001 * 109.47367 * 296.04483 * 1 2 3 27 27 H 1.09004 * 109.47161 * 56.04179 * 1 2 3 28 28 H 1.08999 * 109.47185 * 176.04254 * 1 2 3 29 29 H 1.08995 * 109.47692 * 183.95560 * 3 2 1 30 30 H 1.09001 * 109.47159 * 303.95997 * 3 2 1 31 31 H 1.09007 * 109.46651 * 63.95510 * 3 2 1 32 32 H 1.09003 * 109.46788 * 306.04458 * 4 2 1 33 33 H 1.08997 * 109.47437 * 186.04976 * 4 2 1 34 34 H 1.09003 * 109.47131 * 60.00377 * 5 4 2 35 35 H 1.08996 * 109.47490 * 300.00091 * 5 4 2 36 36 H 1.09003 * 109.46905 * 60.00004 * 6 5 4 37 37 H 1.09007 * 109.47185 * 300.00469 * 6 5 4 38 38 H 1.09000 * 109.47139 * 29.99792 * 8 7 6 39 39 H 1.08995 * 109.47254 * 150.00293 * 8 7 6 40 40 H 0.96992 * 120.00233 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47000 * 59.98851 * 19 17 7 42 42 H 1.09005 * 109.46757 * 299.99893 * 19 17 7 43 43 H 1.08997 * 112.53000 * 45.18339 * 20 19 17 44 44 H 1.08999 * 113.14496 * 327.11375 * 21 20 19 45 45 H 1.08999 * 113.14487 * 96.59446 * 21 20 19 46 46 H 1.08997 * 113.14353 * 263.40546 * 25 20 19 47 47 H 1.08999 * 113.14822 * 32.88700 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 1.6315 -2.2426 0.9701 6 6 2.1793 -3.0404 2.1552 7 7 1.8313 -4.4543 1.9947 8 6 0.5745 -4.9665 2.5462 9 6 0.8024 -5.4431 3.9576 10 1 1.7852 -5.3712 4.3997 11 6 -0.2438 -5.9699 4.6848 12 7 -0.0450 -6.3853 5.9167 13 14 -1.9438 -6.0936 3.9203 14 1 -2.0849 -7.4044 3.2369 15 1 -2.9742 -5.9760 4.9831 16 1 -2.1235 -4.9988 2.9333 17 6 2.6675 -5.2840 1.3397 18 8 3.7078 -4.8599 0.8828 19 6 2.3092 -6.7385 1.1741 20 6 3.4190 -7.4520 0.3996 21 6 3.2727 -7.3223 -1.1183 22 16 4.0254 -8.9597 -1.3273 23 8 5.4421 -8.9312 -1.2201 24 8 3.3501 -9.7560 -2.2912 25 6 3.1994 -8.9626 0.2880 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3434 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9234 32 1 1.5611 -0.3873 2.0627 33 1 3.0797 -0.6611 1.1755 34 1 2.0658 -2.6213 0.0449 35 1 0.5472 -2.3475 0.9322 36 1 1.7446 -2.6616 3.0802 37 1 3.2636 -2.9355 2.1936 38 1 -0.1723 -4.1725 2.5470 39 1 0.2212 -5.7970 1.9350 40 1 -0.7810 -6.7562 6.4281 41 1 1.3716 -6.8214 0.6243 42 1 2.1967 -7.1989 2.1557 43 1 4.4141 -7.1890 0.7582 44 1 2.2341 -7.2830 -1.4468 45 1 3.8746 -6.5171 -1.5395 46 1 3.7400 -9.5311 1.0447 47 1 2.1467 -9.2394 0.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361968270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:15 Heat of formation + Delta-G solvation = -81.250628 kcal Electronic energy + Delta-G solvation = -27215.474665 eV Core-core repulsion = 23333.678981 eV Total energy + Delta-G solvation = -3881.795685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.56808 -37.79016 -37.38592 -36.79011 -36.04190 -35.24346 -32.95368 -31.82193 -29.00295 -28.08637 -27.66920 -26.65345 -25.76139 -22.80641 -22.66364 -20.96244 -20.56979 -18.89289 -18.42177 -17.14681 -16.71158 -16.45211 -16.34889 -16.13005 -15.71634 -15.51811 -15.24864 -14.82402 -14.74048 -14.28818 -14.11120 -13.85084 -13.16864 -12.94196 -12.90652 -12.63457 -12.47706 -12.40913 -12.29188 -12.26005 -12.18288 -11.99661 -11.84414 -11.66629 -11.38412 -11.28228 -11.19998 -11.02239 -10.93968 -10.74633 -10.50411 -10.38157 -10.29505 -10.24856 -9.71467 -9.17358 -8.81518 -8.43234 -7.84965 -6.30596 -4.33123 0.13326 1.96008 3.09022 3.17211 3.19455 3.25487 3.59700 3.65782 3.94900 4.02209 4.17545 4.28811 4.72084 4.92861 4.99230 4.99906 5.06211 5.13856 5.17421 5.28916 5.33353 5.38130 5.46779 5.50350 5.56827 5.58720 5.70523 5.72091 5.72712 5.76761 5.84034 5.90141 6.06148 6.15946 6.22884 6.35706 6.40803 6.49762 6.58886 6.95095 6.97354 7.24937 7.35015 8.03661 8.31666 8.73380 8.84194 9.28458 10.81887 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.004134 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.299903 B = 6772.065469 C = 9666.906648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.589 5.589 8 C 0.208 3.792 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.889 5.889 13 Si 0.870 3.130 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.265 1.265 17 C 0.519 3.481 18 O -0.567 6.567 19 C -0.117 4.117 20 C -0.049 4.049 21 C -0.590 4.590 22 S 2.401 3.599 23 O -0.918 6.918 24 O -0.936 6.936 25 C -0.596 4.596 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 4.153 -11.838 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.319 5.319 8 C 0.086 3.914 9 C -0.582 4.582 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.526 5.526 13 Si 0.697 3.303 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.189 1.189 17 C 0.308 3.692 18 O -0.448 6.448 19 C -0.158 4.158 20 C -0.070 4.070 21 C -0.719 4.719 22 S 2.584 3.416 23 O -0.915 6.915 24 O -0.933 6.933 25 C -0.725 4.725 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.158 0.842 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.965 3.366 -13.102 13.848 hybrid contribution -2.120 1.002 1.489 2.778 sum 0.846 4.368 -11.613 12.436 Atomic orbital electron populations 1.22437 0.87508 1.02613 1.00162 1.61971 1.08021 1.13515 1.43736 1.22369 1.00786 0.88969 1.00224 1.22077 1.00208 0.93794 0.90928 1.21947 1.01285 0.93455 1.00079 1.21227 1.00846 0.80790 0.97382 1.47863 1.22020 1.08187 1.53834 1.19820 0.81656 0.94894 0.94990 1.21378 0.98427 1.42000 0.96363 0.90324 1.24880 0.98656 0.94514 0.94620 1.69886 1.32578 1.40798 1.09372 0.86947 0.84587 0.79251 0.79560 1.19767 1.20859 1.18927 1.20374 0.83314 0.88106 0.77434 1.90604 1.25290 1.78073 1.50845 1.21497 0.97893 0.92985 1.03423 1.21231 1.02599 0.90790 0.92405 1.31001 1.13568 1.23472 1.03869 1.08576 0.75732 0.79186 0.78085 1.93704 1.25714 1.85787 1.86343 1.93617 1.75870 1.66110 1.57668 1.31044 1.14444 1.03424 1.23590 0.95644 0.91729 0.90911 0.91376 0.91607 0.95788 0.94628 0.90627 0.90991 0.91969 0.90436 0.90642 0.94919 0.95194 0.92283 0.88816 0.86482 0.86089 0.84197 0.85388 0.85557 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.64 5.02 -251.27 -1.26 -7.90 16 3 C 0.02 0.24 9.57 60.07 0.57 0.82 16 4 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 5 C -0.13 -1.88 5.46 -26.74 -0.15 -2.03 16 6 C 0.12 2.05 5.41 -4.04 -0.02 2.03 16 7 N -0.59 -11.13 2.46 -175.06 -0.43 -11.56 16 8 C 0.21 4.25 4.03 -5.20 -0.02 4.23 16 9 C -0.54 -13.49 9.84 -34.44 -0.34 -13.83 16 10 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 11 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.89 -24.86 13.96 55.43 0.77 -24.09 16 13 Si 0.87 18.84 27.47 -169.99 -4.67 14.17 16 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 17 C 0.52 9.59 7.67 -10.98 -0.08 9.50 16 18 O -0.57 -11.38 15.36 5.56 0.09 -11.29 16 19 C -0.12 -1.79 4.03 -27.89 -0.11 -1.91 16 20 C -0.05 -0.63 2.80 -90.58 -0.25 -0.88 16 21 C -0.59 -6.16 7.48 37.18 0.28 -5.88 16 22 S 2.40 23.96 7.55 -107.50 -0.81 23.15 16 23 O -0.92 -12.24 18.18 -57.30 -1.04 -13.28 16 24 O -0.94 -11.88 18.18 -57.30 -1.04 -12.92 16 25 C -0.60 -5.72 7.50 37.18 0.28 -5.44 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 29 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 36 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 38 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 39 H 0.03 0.58 5.87 -51.93 -0.30 0.27 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.09 1.26 7.15 -51.93 -0.37 0.89 16 42 H 0.12 1.94 8.00 -51.93 -0.42 1.53 16 43 H 0.12 1.64 7.71 -51.93 -0.40 1.24 16 44 H 0.14 1.24 7.94 -51.93 -0.41 0.83 16 45 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.13 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.14 1.20 8.12 -51.93 -0.42 0.77 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -33.93 390.52 -9.90 -43.83 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.99 Total: 3.99 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 0.60 Total: -9.97 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.92 Total: -43.55 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -2.00 Total: -37.50 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.67 Total: 14.17 kcal Atomic # 16 Polarization: 23.96 SS G_CDS: -0.81 Total: 23.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.93 -9.90 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361968270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.421 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds