Wall clock time and date at job start Sat Apr 11 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 111.00005 * 2 1 4 4 C 1.46894 * 111.00351 * 123.95907 * 2 1 3 5 5 C 1.52991 * 109.47165 * 66.04291 * 4 2 1 6 6 C 1.52999 * 109.47314 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.47379 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00029 * 269.99923 * 7 6 5 9 9 C 1.50701 * 109.47515 * 270.00037 * 8 7 6 10 10 H 1.08007 * 119.99572 * 0.02562 * 9 8 7 11 11 C 1.37869 * 120.00611 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00634 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99759 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.47010 * 90.00027 * 13 11 9 15 15 H 1.48500 * 109.47256 * 209.99838 * 13 11 9 16 16 H 1.48491 * 109.47225 * 330.00102 * 13 11 9 17 17 C 1.34777 * 119.99954 * 90.00421 * 7 6 5 18 18 O 1.21280 * 120.00069 * 359.97438 * 17 7 6 19 19 C 1.50706 * 120.00107 * 180.02562 * 17 7 6 20 20 C 1.52989 * 109.47268 * 179.97438 * 19 17 7 21 21 C 1.53046 * 113.15245 * 275.37017 * 20 19 17 22 22 S 1.81421 * 89.89146 * 211.85103 * 21 20 19 23 23 O 1.42100 * 112.75626 * 280.47671 * 22 21 20 24 24 O 1.42102 * 112.75037 * 136.72699 * 22 21 20 25 25 C 1.53046 * 113.15293 * 174.99935 * 20 19 17 26 26 H 1.09001 * 109.47367 * 296.04483 * 1 2 3 27 27 H 1.09004 * 109.47161 * 56.04179 * 1 2 3 28 28 H 1.08999 * 109.47185 * 176.04254 * 1 2 3 29 29 H 1.08995 * 109.47692 * 183.95560 * 3 2 1 30 30 H 1.09001 * 109.47159 * 303.95997 * 3 2 1 31 31 H 1.09007 * 109.46651 * 63.95510 * 3 2 1 32 32 H 1.09003 * 109.46788 * 306.04458 * 4 2 1 33 33 H 1.08997 * 109.47437 * 186.04976 * 4 2 1 34 34 H 1.09003 * 109.47131 * 60.00377 * 5 4 2 35 35 H 1.08996 * 109.47490 * 300.00091 * 5 4 2 36 36 H 1.09003 * 109.46905 * 60.00004 * 6 5 4 37 37 H 1.09007 * 109.47185 * 300.00469 * 6 5 4 38 38 H 1.09000 * 109.47139 * 29.99792 * 8 7 6 39 39 H 1.08995 * 109.47254 * 150.00293 * 8 7 6 40 40 H 0.96992 * 120.00233 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47000 * 59.98851 * 19 17 7 42 42 H 1.09005 * 109.46757 * 299.99893 * 19 17 7 43 43 H 1.08997 * 112.53000 * 45.18339 * 20 19 17 44 44 H 1.08999 * 113.14496 * 327.11375 * 21 20 19 45 45 H 1.08999 * 113.14487 * 96.59446 * 21 20 19 46 46 H 1.08997 * 113.14353 * 263.40546 * 25 20 19 47 47 H 1.08999 * 113.14822 * 32.88700 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 1.6315 -2.2426 0.9701 6 6 2.1793 -3.0404 2.1552 7 7 1.8313 -4.4543 1.9947 8 6 0.5745 -4.9665 2.5462 9 6 0.8024 -5.4431 3.9576 10 1 1.7852 -5.3712 4.3997 11 6 -0.2438 -5.9699 4.6848 12 7 -0.0450 -6.3853 5.9167 13 14 -1.9438 -6.0936 3.9203 14 1 -2.0849 -7.4044 3.2369 15 1 -2.9742 -5.9760 4.9831 16 1 -2.1235 -4.9988 2.9333 17 6 2.6675 -5.2840 1.3397 18 8 3.7078 -4.8599 0.8828 19 6 2.3092 -6.7385 1.1741 20 6 3.4190 -7.4520 0.3996 21 6 3.2727 -7.3223 -1.1183 22 16 4.0254 -8.9597 -1.3273 23 8 5.4421 -8.9312 -1.2201 24 8 3.3501 -9.7560 -2.2912 25 6 3.1994 -8.9626 0.2880 26 1 -0.3634 0.4512 0.9233 27 1 -0.3634 0.5741 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3434 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8723 0.9234 32 1 1.5611 -0.3873 2.0627 33 1 3.0797 -0.6611 1.1755 34 1 2.0658 -2.6213 0.0449 35 1 0.5472 -2.3475 0.9322 36 1 1.7446 -2.6616 3.0802 37 1 3.2636 -2.9355 2.1936 38 1 -0.1723 -4.1725 2.5470 39 1 0.2212 -5.7970 1.9350 40 1 -0.7810 -6.7562 6.4281 41 1 1.3716 -6.8214 0.6243 42 1 2.1967 -7.1989 2.1557 43 1 4.4141 -7.1890 0.7582 44 1 2.2341 -7.2830 -1.4468 45 1 3.8746 -6.5171 -1.5395 46 1 3.7400 -9.5311 1.0447 47 1 2.1467 -9.2394 0.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361968270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:15 Heat of formation + Delta-G solvation = -106.872920 kcal Electronic energy + Delta-G solvation = -27216.585731 eV Core-core repulsion = 23333.678981 eV Total energy + Delta-G solvation = -3882.906751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97990 -38.77249 -38.35264 -37.81004 -37.01922 -36.73569 -34.71760 -33.22445 -30.17797 -29.79843 -28.48993 -27.46694 -26.92710 -24.46287 -23.88357 -21.96683 -21.66883 -19.93466 -19.66697 -19.04479 -18.04526 -17.60238 -17.33110 -17.03611 -16.82761 -16.53187 -16.51636 -16.05985 -15.81303 -15.71077 -15.34222 -14.94468 -14.65300 -14.12168 -13.97335 -13.91588 -13.76158 -13.55287 -13.28477 -13.25564 -13.23683 -13.20009 -13.03420 -12.67757 -12.60403 -12.54544 -12.37795 -12.30282 -12.16909 -11.98257 -11.97234 -11.68371 -11.52724 -11.44537 -11.17417 -10.79185 -10.61210 -9.41712 -9.32879 -8.28013 -6.35877 -0.72633 1.14139 1.41908 1.44468 1.53058 1.79186 2.26645 2.36177 2.80177 3.02966 3.06690 3.14945 3.31133 3.70750 3.87196 3.96269 4.08327 4.16236 4.23153 4.31242 4.38619 4.41475 4.47021 4.51697 4.55048 4.61695 4.65564 4.73956 4.75055 4.79630 4.81261 4.89896 4.92296 4.99561 5.01085 5.05300 5.15702 5.21124 5.26473 5.46799 5.72792 6.04050 6.10117 6.20637 6.64160 6.72693 7.26361 7.38680 8.88196 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007312 B = 0.004134 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3828.299903 B = 6772.065469 C = 9666.906648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.563 5.563 3 C 0.024 3.976 4 C 0.063 3.937 5 C -0.111 4.111 6 C 0.119 3.881 7 N -0.597 5.597 8 C 0.216 3.784 9 C -0.540 4.540 10 H 0.029 0.971 11 C 0.020 3.980 12 N -0.944 5.944 13 Si 0.938 3.062 14 H -0.256 1.256 15 H -0.291 1.291 16 H -0.239 1.239 17 C 0.510 3.490 18 O -0.587 6.587 19 C -0.116 4.116 20 C -0.065 4.065 21 C -0.586 4.586 22 S 2.442 3.558 23 O -0.953 6.953 24 O -0.956 6.956 25 C -0.582 4.582 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.028 0.972 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.163 0.837 45 H 0.125 0.875 46 H 0.139 0.861 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 4.349 -13.919 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.150 4.150 6 C -0.004 4.004 7 N -0.326 5.326 8 C 0.094 3.906 9 C -0.578 4.578 10 H 0.047 0.953 11 C -0.179 4.179 12 N -0.583 5.583 13 Si 0.761 3.239 14 H -0.180 1.180 15 H -0.217 1.217 16 H -0.162 1.162 17 C 0.300 3.700 18 O -0.470 6.470 19 C -0.157 4.157 20 C -0.086 4.086 21 C -0.716 4.716 22 S 2.627 3.373 23 O -0.950 6.950 24 O -0.954 6.954 25 C -0.712 4.712 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.181 0.819 45 H 0.143 0.857 46 H 0.157 0.843 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.975 3.578 -15.221 15.666 hybrid contribution -1.387 1.007 2.214 2.801 sum -0.412 4.585 -13.006 13.797 Atomic orbital electron populations 1.22466 0.86789 1.02490 1.00991 1.61966 1.08839 1.14782 1.43169 1.22424 1.00996 0.87846 1.01082 1.21971 1.00298 0.92710 0.91556 1.21738 1.01022 0.94265 0.97971 1.21288 1.00292 0.80519 0.98321 1.47960 1.21855 1.09025 1.53805 1.19666 0.82496 0.95782 0.92632 1.21521 0.96268 1.41550 0.98494 0.95298 1.25778 1.03264 0.94009 0.94819 1.70057 1.34052 1.42731 1.11467 0.85852 0.78373 0.80726 0.78946 1.18043 1.21715 1.16183 1.21000 0.82841 0.89344 0.76804 1.90587 1.25980 1.78729 1.51660 1.21542 1.00040 0.90653 1.03424 1.21216 1.00996 0.92798 0.93586 1.31042 1.15060 1.23476 1.01979 1.07334 0.74306 0.78204 0.77490 1.93654 1.28249 1.86239 1.86877 1.93585 1.76071 1.66817 1.58880 1.30991 1.15942 1.01149 1.23123 0.95443 0.90150 0.91631 0.91161 0.90182 0.95349 0.94367 0.90675 0.92382 0.91646 0.91026 0.91733 0.93960 0.92746 0.92347 0.86231 0.88029 0.87738 0.81912 0.85659 0.84253 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.32 127.69 1.19 1.60 16 2 N -0.56 -12.69 5.02 -948.88 -4.76 -17.45 16 3 C 0.02 0.43 9.57 127.69 1.22 1.65 16 4 C 0.06 1.55 4.96 86.30 0.43 1.98 16 5 C -0.11 -3.16 5.46 30.59 0.17 -2.99 16 6 C 0.12 4.06 5.41 86.38 0.47 4.53 16 7 N -0.60 -22.33 2.46 -826.16 -2.03 -24.36 16 8 C 0.22 8.52 4.03 85.63 0.35 8.87 16 9 C -0.54 -27.10 9.84 25.60 0.25 -26.85 16 10 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 11 C 0.02 1.04 5.47 84.65 0.46 1.50 16 12 N -0.94 -54.03 13.96 21.45 0.30 -53.73 16 13 Si 0.94 37.41 27.47 68.60 1.88 39.29 16 14 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.24 -8.46 6.54 99.48 0.65 -7.81 16 17 C 0.51 18.70 7.67 87.66 0.67 19.37 16 18 O -0.59 -23.75 15.36 -3.03 -0.05 -23.80 16 19 C -0.12 -3.39 4.03 29.85 0.12 -3.27 16 20 C -0.06 -1.56 2.80 -10.77 -0.03 -1.59 16 21 C -0.59 -11.08 7.48 72.00 0.54 -10.54 16 22 S 2.44 44.92 7.55 -56.49 -0.43 44.49 16 23 O -0.95 -24.86 18.18 -127.88 -2.32 -27.18 16 24 O -0.96 -22.39 18.18 -127.88 -2.32 -24.72 16 25 C -0.58 -9.82 7.50 72.00 0.54 -9.28 16 26 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 1.31 8.12 -2.38 -0.02 1.29 16 28 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 29 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.08 1.18 8.12 -2.39 -0.02 1.16 16 31 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.04 0.91 8.12 -2.39 -0.02 0.90 16 33 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.82 6.55 -2.39 -0.02 1.80 16 36 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 37 H 0.06 2.31 7.42 -2.38 -0.02 2.29 16 38 H 0.04 1.62 7.13 -2.39 -0.02 1.60 16 39 H 0.05 1.92 5.87 -2.39 -0.01 1.90 16 40 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.12 2.83 7.15 -2.39 -0.02 2.81 16 42 H 0.10 3.32 8.00 -2.38 -0.02 3.30 16 43 H 0.10 2.85 7.71 -2.39 -0.02 2.84 16 44 H 0.16 2.33 7.94 -2.39 -0.02 2.31 16 45 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.17 2.14 8.12 -2.39 -0.02 2.12 16 Total: -1.00 -74.28 390.52 -2.47 -76.75 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.88 Total: 25.73 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 6.38 Total: -15.03 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -6.49 Total: -95.54 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -4.70 Total: -75.70 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 1.88 Total: 39.29 kcal Atomic # 16 Polarization: 44.92 SS G_CDS: -0.43 Total: 44.49 kcal Total: -74.28 -2.47 -76.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361968270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.123 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds