Wall clock time and date at job start Sat Apr 11 2020 03:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.03677 * 2 1 4 4 C 1.35320 * 107.74930 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.04408 * 179.97438 * 4 3 2 6 6 H 1.09003 * 115.54778 * 334.32724 * 5 4 3 7 7 C 1.52996 * 117.49823 * 188.61807 * 5 4 3 8 8 C 1.53000 * 60.00131 * 252.50877 * 7 5 4 9 9 H 1.08998 * 117.49582 * 107.48748 * 8 7 5 10 10 C 1.50695 * 117.51736 * 252.51771 * 8 7 5 11 11 O 1.21284 * 120.00222 * 68.72153 * 10 8 7 12 12 N 1.34774 * 119.99967 * 248.71046 * 10 8 7 13 13 C 1.46962 * 120.59545 * 359.73237 * 12 10 8 14 14 C 1.53811 * 108.40038 * 124.75182 * 13 12 10 15 15 N 1.46965 * 108.58063 * 49.63926 * 14 13 12 16 16 C 1.34770 * 120.59655 * 124.67048 * 15 14 13 17 17 O 1.21684 * 120.00010 * 174.80237 * 16 15 14 18 18 C 1.46380 * 119.99972 * 354.79630 * 16 15 14 19 19 H 1.07999 * 120.00004 * 5.21216 * 18 16 15 20 20 C 1.40049 * 120.00088 * 185.21270 * 18 16 15 21 21 N 1.30670 * 119.99966 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00083 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47079 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47155 * 119.99952 * 22 20 18 25 25 H 1.48502 * 109.47021 * 239.99730 * 22 20 18 26 26 C 1.46963 * 118.80684 * 304.64530 * 15 14 13 27 27 C 1.46964 * 120.59392 * 179.97438 * 12 10 8 28 28 C 1.39873 * 107.91560 * 0.25697 * 4 3 2 29 29 N 1.30839 * 108.20354 * 359.55970 * 28 4 3 30 30 H 1.08998 * 109.46998 * 90.00008 * 1 2 3 31 31 H 1.08995 * 109.47339 * 210.00600 * 1 2 3 32 32 H 1.09006 * 109.46997 * 330.00147 * 1 2 3 33 33 H 1.08009 * 126.13186 * 359.95272 * 3 2 1 34 34 H 1.09008 * 117.49514 * 145.01855 * 7 5 4 35 35 H 1.09005 * 117.50016 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.60777 * 244.53563 * 13 12 10 37 37 H 1.09004 * 109.61213 * 5.04409 * 13 12 10 38 38 H 1.08999 * 109.74194 * 289.84422 * 14 13 12 39 39 H 1.09005 * 109.67180 * 169.38934 * 14 13 12 40 40 H 0.96996 * 120.00271 * 180.02562 * 21 20 18 41 41 H 1.09001 * 109.61229 * 295.47938 * 26 15 14 42 42 H 1.09004 * 109.74995 * 175.05810 * 26 15 14 43 43 H 1.09003 * 109.61058 * 354.95897 * 27 12 10 44 44 H 1.08999 * 109.60864 * 115.46420 * 27 12 10 45 45 H 1.08001 * 125.89688 * 179.73407 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.6332 2.5392 -0.4265 7 6 6.1243 0.8670 -0.2023 8 6 5.7373 1.4069 1.1759 9 1 5.4895 0.6802 1.9496 10 6 6.4326 2.6550 1.6552 11 8 6.2133 3.7175 1.1132 12 7 7.2981 2.5905 2.6863 13 6 7.5691 1.3110 3.3566 14 6 9.0860 1.0588 3.3265 15 7 9.7713 2.2678 3.8046 16 6 10.6369 2.2033 4.8356 17 8 11.2691 3.1905 5.1619 18 6 10.8164 0.9458 5.5630 19 1 10.3199 0.0492 5.2222 20 6 11.6318 0.9052 6.7008 21 7 12.2329 1.9898 7.1129 22 14 11.8615 -0.6997 7.6286 23 1 11.0798 -1.7726 6.9628 24 1 13.3005 -1.0663 7.6350 25 1 11.3862 -0.5360 9.0260 26 6 9.4961 3.5483 3.1379 27 6 7.9838 3.7994 3.1640 28 6 3.5347 -0.7321 -0.0050 29 7 2.2892 -1.1328 0.0007 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9281 2.1194 -0.0007 34 1 6.8822 1.4146 -0.7627 35 1 6.1311 -0.2148 -0.3358 36 1 7.2238 1.3588 4.3894 37 1 7.0525 0.5068 2.8324 38 1 9.4024 0.8379 2.3071 39 1 9.3313 0.2183 3.9758 40 1 12.7980 1.9617 7.9007 41 1 9.8418 3.5047 2.1050 42 1 10.0101 4.3542 3.6618 43 1 7.7413 4.6391 2.5127 44 1 7.6676 4.0207 4.1833 45 1 4.4054 -1.3710 -0.0101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362437795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:17 Heat of formation + Delta-G solvation = 27.764622 kcal Electronic energy + Delta-G solvation = -27994.212461 eV Core-core repulsion = 24013.992832 eV Total energy + Delta-G solvation = -3980.219629 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20751 -41.30459 -39.78328 -37.86520 -37.17021 -34.80574 -34.40998 -33.87918 -32.52047 -31.06370 -29.11965 -28.13356 -27.52002 -25.55525 -24.32533 -23.84556 -23.17442 -21.89916 -21.34470 -20.61717 -19.71872 -18.79227 -18.09287 -17.71639 -17.34357 -17.02636 -16.30773 -16.27661 -16.18210 -15.92632 -15.70370 -15.36217 -15.27048 -15.06253 -14.49443 -14.29585 -13.99397 -13.62273 -13.59299 -13.44983 -13.36626 -13.28094 -13.09013 -12.81985 -12.75227 -12.73055 -12.33401 -12.28127 -11.94057 -11.91625 -11.73477 -11.51142 -11.33679 -10.93448 -10.78732 -10.34480 -10.05510 -9.76405 -9.16574 -8.98418 -8.27471 -6.81844 0.94516 1.42869 1.44135 1.46126 1.61475 1.70430 1.74603 1.98729 2.26561 2.48135 2.83618 3.09238 3.43489 3.61182 3.67416 3.88527 3.98146 3.99765 4.03793 4.10873 4.20633 4.26266 4.33704 4.39493 4.45774 4.46533 4.51317 4.59038 4.70462 4.71860 4.79358 4.79979 4.86990 4.92630 5.04479 5.10100 5.18087 5.37051 5.39982 5.46975 5.71765 5.73809 6.13641 6.14428 6.32724 6.45537 6.75931 6.90307 7.15136 7.41690 8.47188 8.68893 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017439 B = 0.002462 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.241721 B =11370.411600 C =12461.710076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.064 3.936 4 C -0.221 4.221 5 C -0.034 4.034 6 H 0.108 0.892 7 C -0.126 4.126 8 C -0.187 4.187 9 H 0.143 0.857 10 C 0.542 3.458 11 O -0.586 6.586 12 N -0.603 5.603 13 C 0.099 3.901 14 C 0.104 3.896 15 N -0.646 5.646 16 C 0.541 3.459 17 O -0.634 6.634 18 C -0.563 4.563 19 H 0.102 0.898 20 C 0.027 3.973 21 N -0.825 5.825 22 Si 0.995 3.005 23 H -0.238 1.238 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.111 3.889 27 C 0.112 3.888 28 C 0.053 3.947 29 N -0.334 5.334 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.197 0.803 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.273 0.727 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.388 -8.458 -14.148 27.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.233 4.233 5 C -0.054 4.054 6 H 0.126 0.874 7 C -0.163 4.163 8 C -0.208 4.208 9 H 0.160 0.840 10 C 0.333 3.667 11 O -0.467 6.467 12 N -0.335 5.335 13 C -0.024 4.024 14 C -0.020 4.020 15 N -0.382 5.382 16 C 0.347 3.653 17 O -0.521 6.521 18 C -0.599 4.599 19 H 0.120 0.880 20 C -0.188 4.188 21 N -0.454 5.454 22 Si 0.815 3.185 23 H -0.160 1.160 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.013 4.013 27 C -0.012 4.012 28 C -0.133 4.133 29 N -0.156 5.156 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.214 0.786 34 H 0.114 0.886 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -23.042 -8.300 -14.132 28.276 hybrid contribution 1.133 0.837 0.769 1.605 sum -21.909 -7.463 -13.363 26.725 Atomic orbital electron populations 1.22172 0.72168 1.05802 1.04567 1.48780 1.07906 1.03373 1.56322 1.22731 0.90717 0.94439 1.00424 1.19325 0.93213 0.93175 1.17565 1.20061 0.87696 0.98935 0.98724 0.87438 1.23146 0.97081 1.02509 0.93563 1.22336 1.05798 0.97768 0.94894 0.83984 1.20289 0.78000 0.90122 0.78284 1.90633 1.65421 1.32514 1.58102 1.48069 1.42627 1.09762 1.33052 1.22451 0.96220 0.85374 0.98387 1.22135 0.91065 0.88654 1.00103 1.48048 1.46924 1.07769 1.35501 1.18754 0.78007 0.89849 0.78667 1.90550 1.51270 1.40498 1.69789 1.21527 1.31271 0.95377 1.11723 0.88013 1.27023 0.92769 1.01287 0.97710 1.70205 1.23042 1.31178 1.21005 0.84998 0.78767 0.77039 0.77700 1.16032 1.19923 1.19761 1.21472 0.94689 0.88593 0.96570 1.21770 0.91342 0.88533 0.99603 1.24130 0.95523 0.94719 0.98902 1.77318 1.02482 1.09767 1.26051 0.89548 0.89204 0.87089 0.78576 0.88625 0.84886 0.91327 0.85031 0.91608 0.87773 0.91739 0.92654 0.91689 0.88628 0.92236 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.47 127.77 1.47 2.12 16 2 N -0.38 -5.98 4.01 -369.56 -1.48 -7.46 16 3 C 0.06 0.96 11.40 83.54 0.95 1.91 16 4 C -0.22 -3.74 5.76 -20.14 -0.12 -3.86 16 5 C -0.03 -0.61 5.76 -11.54 -0.07 -0.68 16 6 H 0.11 2.25 7.67 -2.39 -0.02 2.23 16 7 C -0.13 -1.91 9.73 30.59 0.30 -1.61 16 8 C -0.19 -3.56 4.69 -11.54 -0.05 -3.62 16 9 H 0.14 2.22 6.78 -2.39 -0.02 2.20 16 10 C 0.54 15.10 7.48 87.66 0.66 15.76 16 11 O -0.59 -20.23 15.66 -3.04 -0.05 -20.28 16 12 N -0.60 -17.62 2.94 -817.25 -2.40 -20.03 16 13 C 0.10 2.51 6.50 86.56 0.56 3.07 16 14 C 0.10 3.35 6.52 86.56 0.56 3.91 16 15 N -0.65 -28.45 2.95 -822.33 -2.42 -30.87 16 16 C 0.54 30.56 7.61 86.36 0.66 31.21 16 17 O -0.63 -42.23 14.47 -4.30 -0.06 -42.30 16 18 C -0.56 -30.09 8.88 24.83 0.22 -29.87 16 19 H 0.10 4.68 5.63 -2.91 -0.02 4.66 16 20 C 0.03 1.45 5.50 85.31 0.47 1.92 16 21 N -0.82 -49.72 11.84 21.84 0.26 -49.46 16 22 Si 1.00 39.11 29.56 68.60 2.03 41.13 16 23 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 24 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 C 0.11 4.48 6.57 86.40 0.57 5.05 16 27 C 0.11 3.81 6.59 86.40 0.57 4.37 16 28 C 0.05 0.89 11.35 85.24 0.97 1.85 16 29 N -0.33 -6.73 12.58 -57.02 -0.72 -7.44 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.13 1.29 6.97 -2.38 -0.02 1.27 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.13 2.21 5.63 -2.38 -0.01 2.20 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 3.39 5.29 -2.38 -0.01 3.37 16 40 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.06 2.99 7.03 -2.38 -0.02 2.98 16 43 H 0.10 3.19 6.99 -2.39 -0.02 3.18 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.20 2.24 7.19 -2.91 -0.02 2.22 16 Total: -1.00 -85.24 371.81 3.89 -81.35 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 1.03 Total: 23.81 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 7.71 Total: 31.55 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -6.77 Total: -115.26 kcal Atomic # 8 Polarization: -62.47 SS G_CDS: -0.11 Total: -62.58 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Total: -85.24 3.89 -81.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362437795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.113 kcal (2) G-P(sol) polarization free energy of solvation -85.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds