Wall clock time and date at job start Sat Apr 11 2020 03:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21274 * 120.00416 * 2 1 4 4 N 1.34777 * 119.99606 * 180.02562 * 2 1 3 5 5 C 1.39305 * 119.99623 * 185.53500 * 4 2 1 6 6 C 1.39079 * 120.59606 * 34.13528 * 5 4 2 7 7 N 1.31607 * 120.77416 * 180.02562 * 6 5 4 8 8 C 1.31913 * 122.16208 * 359.95645 * 7 6 5 9 9 C 1.37975 * 121.10852 * 0.04641 * 8 7 6 10 10 C 1.39928 * 119.08569 * 359.97438 * 9 8 7 11 11 C 1.47820 * 120.97240 * 179.97438 * 10 9 8 12 12 O 1.21560 * 119.99723 * 234.59293 * 11 10 9 13 13 N 1.34772 * 120.00300 * 54.59791 * 11 10 9 14 14 C 1.47082 * 120.87783 * 355.66770 * 13 11 10 15 15 C 1.53699 * 108.27588 * 128.75875 * 14 13 11 16 16 N 1.46909 * 109.25500 * 54.07920 * 15 14 13 17 17 C 1.46899 * 110.99505 * 172.60794 * 16 15 14 18 18 C 1.50697 * 109.47201 * 59.31880 * 17 16 15 19 19 H 1.08001 * 120.00128 * 5.00199 * 18 17 16 20 20 C 1.37880 * 120.00341 * 185.01123 * 18 17 16 21 21 N 1.31515 * 119.99486 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00399 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47326 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47320 * 120.00099 * 22 20 18 25 25 H 1.48501 * 109.47413 * 240.00065 * 22 20 18 26 26 C 1.46892 * 111.26783 * 296.75881 * 16 15 14 27 27 C 1.47074 * 120.88306 * 175.95106 * 13 11 10 28 28 H 1.08998 * 109.46907 * 269.99684 * 1 2 3 29 29 H 1.09007 * 109.47289 * 29.99754 * 1 2 3 30 30 H 1.09005 * 109.47542 * 149.99706 * 1 2 3 31 31 H 0.97001 * 120.00423 * 5.52743 * 4 2 1 32 32 H 1.08001 * 119.61252 * 0.02866 * 6 5 4 33 33 H 1.08000 * 119.44677 * 180.02562 * 8 7 6 34 34 H 1.08006 * 120.45631 * 180.25359 * 9 8 7 35 35 H 1.09007 * 109.63041 * 248.52267 * 14 13 11 36 36 H 1.08998 * 109.63019 * 9.10548 * 14 13 11 37 37 H 1.09004 * 109.64657 * 294.08107 * 15 14 13 38 38 H 1.08998 * 109.42122 * 173.94832 * 15 14 13 39 39 H 1.08997 * 109.46645 * 179.31414 * 17 16 15 40 40 H 1.08999 * 109.47673 * 299.31464 * 17 16 15 41 41 H 0.97001 * 119.99931 * 179.97438 * 21 20 18 42 42 H 1.09003 * 109.49720 * 303.14339 * 26 16 15 43 43 H 1.09001 * 109.49249 * 183.06660 * 26 16 15 44 44 H 1.09004 * 109.62878 * 350.89490 * 27 13 11 45 45 H 1.08997 * 109.63144 * 111.47088 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.5690 -1.1701 0.1158 6 6 4.2163 -0.2145 0.8918 7 7 5.5276 -0.2137 1.0038 8 6 6.2848 -1.1063 0.3956 9 6 5.7302 -2.0917 -0.3950 10 6 4.3401 -2.1383 -0.5487 11 6 3.7018 -3.1756 -1.3864 12 8 2.9490 -2.8530 -2.2846 13 7 3.9543 -4.4789 -1.1541 14 6 4.9333 -4.8883 -0.1356 15 6 4.2655 -5.9199 0.7876 16 7 3.7200 -7.0156 -0.0248 17 6 3.2281 -8.1073 0.8263 18 6 2.1518 -7.5844 1.7422 19 1 1.8052 -6.5664 1.6422 20 6 1.6096 -8.4054 2.7081 21 7 2.0314 -9.6451 2.8297 22 14 0.2759 -7.7570 3.8440 23 1 -0.0193 -6.3420 3.5036 24 1 -0.9543 -8.5723 3.6791 25 1 0.7406 -7.8413 5.2519 26 6 2.6652 -6.5356 -0.9274 27 6 3.2629 -5.5294 -1.9167 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6992 -2.0053 -0.0818 32 1 3.6360 0.5356 1.4086 33 1 7.3570 -1.0649 0.5184 34 1 6.3599 -2.8197 -0.8848 35 1 5.8016 -5.3345 -0.6206 36 1 5.2415 -4.0196 0.4462 37 1 3.4589 -5.4444 1.3456 38 1 5.0052 -6.3162 1.4832 39 1 2.8187 -8.8999 0.1999 40 1 4.0510 -8.5031 1.4214 41 1 1.6502 -10.2227 3.5094 42 1 1.8809 -6.0515 -0.3455 43 1 2.2442 -7.3784 -1.4756 44 1 2.4661 -5.0847 -2.5130 45 1 3.9736 -6.0359 -2.5696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363183639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:20 Heat of formation + Delta-G solvation = -15.342467 kcal Electronic energy + Delta-G solvation = -29206.078704 eV Core-core repulsion = 25223.989811 eV Total energy + Delta-G solvation = -3982.088893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42557 -39.94778 -39.13112 -37.65136 -35.40165 -34.67605 -32.91628 -32.27397 -31.31792 -30.67877 -29.13506 -28.29721 -25.82350 -24.63812 -24.03014 -23.13934 -22.39198 -20.98764 -20.82992 -19.29029 -17.95628 -17.71252 -17.50389 -16.63519 -16.48402 -16.00213 -15.45954 -15.21162 -15.05042 -14.88408 -14.67417 -14.55690 -14.01673 -13.95208 -13.88131 -13.64524 -13.51773 -13.03761 -12.86144 -12.60423 -12.43186 -12.32058 -11.98590 -11.29431 -11.23218 -11.20238 -11.14524 -10.81495 -10.77743 -10.45006 -10.40854 -10.29259 -10.01034 -9.81131 -9.74311 -9.55839 -8.67586 -8.57569 -8.56708 -7.41062 -6.17249 -4.27105 0.60934 0.80596 2.26257 2.47022 2.70392 2.88948 3.15738 3.24870 3.25844 3.56415 4.17691 4.27743 4.31083 4.36181 4.51818 4.69344 4.74862 4.89132 4.97091 5.07416 5.12991 5.15396 5.30337 5.32243 5.39705 5.53460 5.55510 5.57962 5.68567 5.72130 5.82290 5.90267 5.92623 6.26845 6.44014 6.44706 6.51517 6.54409 6.95542 7.06705 7.29921 7.36181 7.65010 7.73638 7.78509 7.81880 7.96772 8.04612 8.11581 8.82301 9.40713 10.88068 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.003826 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.219804 B = 7317.186572 C = 8216.782011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.517 3.483 3 O -0.527 6.527 4 N -0.662 5.662 5 C 0.142 3.858 6 C 0.104 3.896 7 N -0.454 5.454 8 C 0.078 3.922 9 C -0.123 4.123 10 C -0.106 4.106 11 C 0.556 3.444 12 O -0.535 6.535 13 N -0.593 5.593 14 C 0.100 3.900 15 C 0.051 3.949 16 N -0.540 5.540 17 C 0.187 3.813 18 C -0.553 4.553 19 H 0.055 0.945 20 C 0.067 3.933 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.049 3.951 27 C 0.115 3.885 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.417 0.583 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.037 0.963 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 13.844 -5.724 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.307 3.693 3 O -0.402 6.402 4 N -0.307 5.307 5 C 0.043 3.957 6 C -0.058 4.058 7 N -0.163 5.163 8 C -0.079 4.079 9 C -0.144 4.144 10 C -0.120 4.120 11 C 0.343 3.657 12 O -0.413 6.413 13 N -0.325 5.325 14 C -0.023 4.023 15 C -0.078 4.078 16 N -0.264 5.264 17 C 0.062 3.938 18 C -0.592 4.592 19 H 0.073 0.927 20 C -0.136 4.136 21 N -0.526 5.526 22 Si 0.716 3.284 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.080 4.080 27 C -0.007 4.007 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.254 0.746 32 H 0.186 0.814 33 H 0.182 0.818 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.186 15.029 -5.877 16.671 hybrid contribution -2.037 -0.751 0.712 2.285 sum 2.149 14.277 -5.164 15.334 Atomic orbital electron populations 1.21896 0.90062 1.05686 1.05428 1.21084 0.91187 0.82648 0.74401 1.90744 1.70604 1.31037 1.47816 1.43488 1.04525 1.10836 1.71898 1.18711 0.84252 0.96779 0.95938 1.22878 0.90411 0.97274 0.95200 1.67571 1.05707 1.23246 1.19755 1.22691 1.00550 0.90493 0.94121 1.22216 0.93078 1.00014 0.99118 1.20195 0.94463 0.98364 0.98985 1.18092 0.81590 0.82279 0.83719 1.90801 1.37368 1.81398 1.31685 1.48176 1.41467 1.04781 1.38049 1.22381 0.91468 0.98585 0.89882 1.22303 0.99156 0.91992 0.94353 1.62501 1.33134 1.09497 1.21286 1.19777 0.94789 0.88395 0.90826 1.21720 1.21780 0.98395 1.17302 0.92672 1.24949 0.96696 0.94768 0.97192 1.69939 1.42441 1.06086 1.34112 0.86605 0.81971 0.78947 0.80864 1.19997 1.20835 1.20834 1.22264 0.93808 0.97103 0.94829 1.21932 0.97097 0.87503 0.94184 0.88057 0.88213 0.89530 0.74593 0.81381 0.81838 0.83623 0.90419 0.89843 0.93788 0.90085 0.95212 0.94493 0.92708 0.94039 0.90096 0.89341 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.31 36.00 0.37 -0.89 16 2 C 0.52 6.02 7.67 -10.99 -0.08 5.93 16 3 O -0.53 -7.82 14.87 5.56 0.08 -7.74 16 4 N -0.66 -7.97 4.85 -9.57 -0.05 -8.02 16 5 C 0.14 1.90 6.29 -83.30 -0.52 1.37 16 6 C 0.10 1.39 9.83 -17.34 -0.17 1.22 16 7 N -0.45 -5.84 10.32 -13.14 -0.14 -5.98 16 8 C 0.08 0.80 11.16 -17.61 -0.20 0.61 16 9 C -0.12 -1.30 7.60 -39.05 -0.30 -1.60 16 10 C -0.11 -1.39 4.89 -104.50 -0.51 -1.90 16 11 C 0.56 8.05 6.55 -12.34 -0.08 7.97 16 12 O -0.53 -9.07 16.20 5.31 0.09 -8.99 16 13 N -0.59 -8.23 3.00 -173.30 -0.52 -8.75 16 14 C 0.10 1.28 5.75 -3.36 -0.02 1.26 16 15 C 0.05 0.86 5.17 -3.46 -0.02 0.84 16 16 N -0.54 -10.16 4.83 -235.46 -1.14 -11.30 16 17 C 0.19 4.40 5.11 -4.98 -0.03 4.38 16 18 C -0.55 -14.07 7.75 -34.44 -0.27 -14.34 16 19 H 0.06 1.40 5.88 -52.49 -0.31 1.09 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.78 13.29 55.43 0.74 -24.05 16 22 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.05 0.84 5.24 -3.70 -0.02 0.82 16 27 C 0.11 1.64 6.58 -3.61 -0.02 1.62 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.42 4.65 8.16 -40.82 -0.33 4.31 16 32 H 0.17 2.23 6.50 -52.49 -0.34 1.89 16 33 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.15 1.19 7.47 -52.48 -0.39 0.80 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.94 4.93 -51.93 -0.26 0.69 16 37 H 0.04 0.83 6.79 -51.93 -0.35 0.48 16 38 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 39 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.04 0.79 6.92 -51.93 -0.36 0.43 16 43 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 44 H 0.09 1.26 7.09 -51.93 -0.37 0.89 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -32.22 366.76 -8.45 -40.67 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.06 Total: 4.32 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.96 Total: 8.97 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -1.10 Total: -58.10 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.17 Total: -16.72 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.22 -8.45 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363183639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.331 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds