Wall clock time and date at job start Sat Apr 11 2020 03:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99637 * 2 1 4 4 C 1.50692 * 109.47179 * 277.85104 * 3 2 1 5 5 H 1.08006 * 120.00227 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00080 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99977 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00304 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46918 * 60.00125 * 8 6 4 10 10 H 1.48499 * 109.47384 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46984 * 300.00437 * 8 6 4 12 12 S 1.65599 * 119.99865 * 180.02562 * 2 1 3 13 13 O 1.42108 * 106.39571 * 166.50020 * 12 2 1 14 14 O 1.42100 * 106.40229 * 33.58133 * 12 2 1 15 15 N 1.65603 * 107.21868 * 280.03689 * 12 2 1 16 16 C 1.46921 * 120.62599 * 91.47091 * 15 12 2 17 17 C 1.53192 * 108.77698 * 126.39319 * 16 15 12 18 18 C 1.53032 * 109.31336 * 54.62928 * 17 16 15 19 19 C 1.53038 * 109.54218 * 298.63803 * 18 17 16 20 20 C 1.46925 * 120.63129 * 271.46825 * 15 12 2 21 21 H 1.09004 * 109.69717 * 113.75293 * 20 15 12 22 22 C 1.52993 * 109.58592 * 353.39688 * 20 15 12 23 23 H 1.09001 * 110.28067 * 47.38756 * 22 20 15 24 24 C 1.54955 * 110.30948 * 169.47246 * 22 20 15 25 25 C 1.55562 * 100.82841 * 155.40570 * 24 22 20 26 26 C 1.54382 * 102.27558 * 325.88569 * 25 24 22 27 27 O 1.43246 * 107.58748 * 21.35449 * 26 25 24 28 28 H 1.08999 * 109.47113 * 274.92099 * 1 2 3 29 29 H 1.08999 * 109.47629 * 34.92107 * 1 2 3 30 30 H 1.09002 * 109.47176 * 154.92518 * 1 2 3 31 31 H 1.09006 * 109.47021 * 37.85361 * 3 2 1 32 32 H 1.09005 * 109.46640 * 157.84878 * 3 2 1 33 33 H 0.97000 * 120.00135 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.59102 * 6.60357 * 16 15 12 35 35 H 1.08998 * 109.70334 * 246.24606 * 16 15 12 36 36 H 1.09008 * 109.49209 * 294.67805 * 17 16 15 37 37 H 1.09002 * 109.52694 * 174.60091 * 17 16 15 38 38 H 1.09004 * 109.46276 * 178.62070 * 18 17 16 39 39 H 1.09004 * 109.46217 * 58.65649 * 18 17 16 40 40 H 1.08998 * 109.49762 * 301.41315 * 19 18 17 41 41 H 1.09001 * 109.52861 * 181.33269 * 19 18 17 42 42 H 1.08998 * 111.12207 * 273.38243 * 24 22 20 43 43 H 1.09001 * 111.12306 * 37.53843 * 24 22 20 44 44 H 1.08996 * 110.83941 * 207.68371 * 25 24 22 45 45 H 1.09005 * 111.00944 * 84.15536 * 25 24 22 46 46 H 1.09000 * 109.83024 * 261.84474 * 26 25 24 47 47 H 1.08999 * 109.83371 * 140.86618 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2805 1.8008 -1.4074 5 1 1.8322 1.2493 -2.2206 6 6 2.9289 2.9918 -1.6571 7 7 3.4753 3.6632 -0.6670 8 14 3.0325 3.6511 -3.4018 9 1 1.6622 3.8711 -3.9300 10 1 3.7759 4.9366 -3.4020 11 1 3.7423 2.6692 -4.2606 12 16 2.2930 -1.4341 -0.0006 13 8 3.6416 -1.1186 -0.3187 14 8 1.5101 -2.3491 -0.7550 15 7 2.2994 -1.9972 1.5567 16 6 1.2414 -2.8998 2.0306 17 6 1.8921 -4.1503 2.6303 18 6 2.8919 -3.7319 3.7107 19 6 3.9900 -2.8687 3.0853 20 6 3.3631 -1.6037 2.4907 21 1 2.9428 -0.9936 3.2903 22 6 4.4320 -0.8041 1.7432 23 1 3.9662 -0.0375 1.1239 24 6 5.4200 -0.1577 2.7467 25 6 6.6812 0.0059 1.8509 26 6 6.5958 -1.2335 0.9344 27 8 5.2344 -1.6788 0.9344 28 1 -0.3633 0.0882 1.0239 29 1 -0.3634 0.8426 -0.5883 30 1 -0.3633 -0.9308 -0.4355 31 1 1.6763 1.9891 0.6307 32 1 3.2035 1.1075 0.3875 33 1 3.9317 4.5008 -0.8427 34 1 0.6030 -3.1854 1.1945 35 1 0.6439 -2.3981 2.7917 36 1 2.4125 -4.7010 1.8466 37 1 1.1236 -4.7848 3.0719 38 1 3.3385 -4.6209 4.1562 39 1 2.3754 -3.1599 4.4816 40 1 4.4906 -3.4315 2.2974 41 1 4.7148 -2.5904 3.8504 42 1 5.0530 0.8089 3.0919 43 1 5.6183 -0.8233 3.5868 44 1 7.5898 -0.0182 2.4524 45 1 6.6290 0.9247 1.2666 46 1 7.2429 -2.0223 1.3180 47 1 6.8973 -0.9660 -0.0784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364063828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:28 Heat of formation + Delta-G solvation = -97.142773 kcal Electronic energy + Delta-G solvation = -30249.069666 eV Core-core repulsion = 26366.584846 eV Total energy + Delta-G solvation = -3882.484820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.67398 -37.63548 -36.48681 -35.45854 -34.95276 -32.48086 -32.36856 -31.94308 -31.31458 -27.92999 -27.66119 -25.07756 -24.13373 -23.68475 -22.22458 -21.32104 -20.86240 -20.30064 -18.08823 -17.08947 -17.04731 -16.33114 -15.96984 -15.70015 -15.22871 -14.91816 -14.58581 -14.28788 -14.13198 -13.80470 -13.68981 -13.58882 -13.30213 -13.06480 -12.71759 -12.48137 -12.17037 -12.11706 -11.68950 -11.53040 -11.38094 -11.25373 -11.19889 -11.11263 -11.02489 -10.91373 -10.83075 -10.72273 -10.66400 -10.57869 -10.41362 -10.32997 -10.01020 -9.79924 -9.65564 -8.73469 -8.59891 -8.37376 -7.99565 -6.07425 -4.11042 1.30830 3.33093 3.36344 3.41341 3.55250 4.15217 4.34511 4.44396 4.66570 4.77128 4.87969 4.93755 5.07483 5.15326 5.25098 5.27911 5.28767 5.43425 5.46900 5.61392 5.66565 5.68522 5.70976 5.77952 5.80198 5.91325 5.96189 6.03175 6.05048 6.07227 6.12241 6.18573 6.22117 6.29502 6.41595 6.45680 6.48519 6.56637 6.65362 6.89559 7.28645 7.47401 7.65000 7.68277 7.90747 8.21113 8.91492 9.54027 11.00810 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013660 B = 0.005826 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.355721 B = 4804.904334 C = 6060.841768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.001 6.001 3 C 0.253 3.747 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 S 2.766 3.234 13 O -0.926 6.926 14 O -1.000 7.000 15 N -1.005 6.005 16 C 0.120 3.880 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.124 4.124 20 C 0.160 3.840 21 H 0.079 0.921 22 C 0.054 3.946 23 H 0.109 0.891 24 C -0.151 4.151 25 C -0.152 4.152 26 C 0.054 3.946 27 O -0.336 6.336 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -10.883 11.884 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.843 5.843 3 C 0.131 3.869 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.776 3.224 13 O -0.910 6.910 14 O -0.984 6.984 15 N -0.844 5.844 16 C -0.006 4.006 17 C -0.170 4.170 18 C -0.153 4.153 19 C -0.163 4.163 20 C 0.054 3.946 21 H 0.097 0.903 22 C -0.004 4.004 23 H 0.126 0.874 24 C -0.190 4.190 25 C -0.190 4.190 26 C -0.023 4.023 27 O -0.254 6.254 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.492 -11.306 11.045 15.813 hybrid contribution -0.007 0.919 -0.472 1.033 sum 0.485 -10.387 10.573 14.829 Atomic orbital electron populations 1.21297 0.80587 1.02922 1.00253 1.57790 1.14263 1.23485 1.88728 1.19166 0.91261 0.78833 0.97651 1.21459 1.35708 1.06161 0.93600 0.92271 1.24905 0.95017 0.96544 0.97338 1.69901 1.36508 1.15832 1.31143 0.86606 0.78272 0.78110 0.84770 1.20178 1.21165 1.20017 1.02629 0.74049 0.72857 0.72884 1.93804 1.32041 1.83225 1.81899 1.93482 1.72783 1.64002 1.68141 1.58451 1.33874 1.60432 1.31608 1.21327 0.89274 0.90024 0.99969 1.21852 0.98947 0.97366 0.98835 1.21478 0.96831 0.99444 0.97582 1.21845 0.97525 0.96470 1.00458 1.21101 0.86382 0.95667 0.91451 0.90270 1.23784 0.92665 0.93395 0.90520 0.87369 1.23340 0.95844 1.01682 0.98097 1.23092 0.97859 0.99956 0.98056 1.22948 0.85252 0.94751 0.99351 1.88552 1.16758 1.50102 1.70004 0.94346 0.90625 0.91983 0.95096 0.93497 0.92679 0.89330 0.91947 0.91464 0.91249 0.92115 0.92126 0.90247 0.91399 0.89874 0.90906 0.90989 0.89999 0.92866 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.71 59.85 0.64 2.34 16 2 N -1.00 -21.17 3.23 -123.05 -0.40 -21.56 16 3 C 0.25 6.26 5.13 -5.20 -0.03 6.23 16 4 C -0.53 -14.77 9.36 -34.44 -0.32 -15.10 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -25.52 13.29 55.43 0.74 -24.78 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 S 2.77 57.24 5.70 -107.50 -0.61 56.63 16 13 O -0.93 -21.72 10.58 -67.45 -0.71 -22.43 16 14 O -1.00 -22.29 15.49 -57.17 -0.89 -23.18 16 15 N -1.01 -16.17 3.35 -106.48 -0.36 -16.52 16 16 C 0.12 1.56 6.48 -3.71 -0.02 1.53 16 17 C -0.13 -1.45 6.08 -26.62 -0.16 -1.61 16 18 C -0.12 -1.19 5.88 -26.69 -0.16 -1.35 16 19 C -0.12 -1.54 4.96 -26.61 -0.13 -1.67 16 20 C 0.16 2.35 2.83 -67.60 -0.19 2.16 16 21 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 22 C 0.05 0.94 2.10 -25.70 -0.05 0.89 16 23 H 0.11 2.27 2.98 -51.93 -0.15 2.11 16 24 C -0.15 -2.13 6.50 -24.34 -0.16 -2.28 16 25 C -0.15 -2.18 7.03 -24.64 -0.17 -2.35 16 26 C 0.05 0.87 7.80 37.88 0.30 1.16 16 27 O -0.34 -6.32 7.04 -60.49 -0.43 -6.74 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.06 1.03 7.08 -51.93 -0.37 0.66 16 31 H 0.03 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.05 1.22 4.84 -51.93 -0.25 0.97 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.09 1.21 6.88 -51.93 -0.36 0.85 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.13 7.21 -51.93 -0.37 0.76 16 41 H 0.07 0.73 6.87 -51.93 -0.36 0.37 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.07 0.84 6.67 -51.93 -0.35 0.50 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -32.76 362.43 -10.45 -43.21 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.67 Total: 1.57 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.56 Total: -8.34 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.02 Total: -62.87 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -2.03 Total: -52.36 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 57.24 SS G_CDS: -0.61 Total: 56.63 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.76 -10.45 -43.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364063828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.936 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds