Wall clock time and date at job start Sat Apr 11 2020 03:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21275 * 120.00198 * 2 1 4 4 N 1.34782 * 119.99623 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99559 * 179.97438 * 4 2 1 6 6 C 1.53039 * 109.45615 * 155.00237 * 5 4 2 7 7 C 1.53195 * 109.31127 * 181.37434 * 6 5 4 8 8 N 1.46924 * 108.77587 * 305.36656 * 7 6 5 9 9 S 1.65601 * 120.62980 * 233.58600 * 8 7 6 10 10 O 1.42097 * 104.27967 * 333.92865 * 9 8 7 11 11 O 1.42096 * 104.27550 * 206.06708 * 9 8 7 12 12 C 1.81399 * 104.44938 * 89.99822 * 9 8 7 13 13 C 1.53002 * 109.47162 * 179.97438 * 12 9 8 14 14 C 1.52997 * 109.47092 * 60.00198 * 13 12 9 15 15 C 1.52997 * 109.47143 * 300.00068 * 13 12 9 16 16 C 1.50706 * 109.46925 * 180.02562 * 13 12 9 17 17 H 1.07999 * 120.00196 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99394 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00338 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99426 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47555 * 90.00165 * 20 18 16 22 22 H 1.48503 * 109.46814 * 210.00053 * 20 18 16 23 23 H 1.48496 * 109.47318 * 329.99545 * 20 18 16 24 24 C 1.46927 * 118.73986 * 53.85943 * 8 7 6 25 25 C 1.53036 * 109.45242 * 275.06527 * 5 4 2 26 26 H 1.09008 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47084 * 300.00272 * 1 2 3 28 28 H 1.08997 * 109.47201 * 60.00640 * 1 2 3 29 29 H 0.97000 * 120.00157 * 0.02562 * 4 2 1 30 30 H 1.09000 * 109.45444 * 35.03313 * 5 4 2 31 31 H 1.09002 * 109.49570 * 61.42145 * 6 5 4 32 32 H 1.09002 * 109.52978 * 301.34247 * 6 5 4 33 33 H 1.08999 * 109.58825 * 185.57790 * 7 6 5 34 34 H 1.09002 * 109.70347 * 65.22500 * 7 6 5 35 35 H 1.09004 * 109.47089 * 59.99998 * 12 9 8 36 36 H 1.09004 * 109.47568 * 299.99988 * 12 9 8 37 37 H 1.08992 * 109.47280 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.46777 * 300.00347 * 14 13 12 39 39 H 1.09000 * 109.47140 * 59.99774 * 14 13 12 40 40 H 1.09004 * 109.47261 * 299.99863 * 15 13 12 41 41 H 1.09002 * 109.47153 * 60.00035 * 15 13 12 42 42 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 43 43 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58644 * 65.92854 * 24 8 7 45 45 H 1.08993 * 109.58633 * 186.35662 * 24 8 7 46 46 H 1.09004 * 109.49307 * 298.57651 * 25 5 4 47 47 H 1.09000 * 109.49416 * 58.66665 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1559 -2.4747 0.6104 7 6 5.6875 -2.4566 0.6397 8 7 6.1832 -2.1906 -0.7176 9 16 7.2815 -3.2057 -1.4287 10 8 7.9675 -3.8008 -0.3359 11 8 7.9661 -2.3822 -2.3627 12 6 6.2670 -4.4380 -2.2905 13 6 7.1775 -5.4447 -2.9964 14 6 8.0617 -6.1449 -1.9627 15 6 8.0595 -4.7118 -4.0093 16 6 6.3346 -6.4681 -3.7129 17 1 5.2572 -6.4064 -3.6695 18 6 6.9389 -7.4832 -4.4238 19 7 8.2509 -7.5580 -4.4771 20 14 5.8941 -8.7513 -5.3125 21 1 5.6176 -8.2842 -6.6946 22 1 6.6223 -10.0446 -5.3635 23 1 4.6121 -8.9335 -4.5857 24 6 5.6907 -1.0034 -1.4295 25 6 4.1550 -1.0408 -1.4377 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.6958 -2.0073 0.0005 30 1 4.0091 -0.3253 0.5892 31 1 3.8134 -3.3157 0.0074 32 1 3.7738 -2.5759 1.6262 33 1 6.0579 -3.4232 0.9810 34 1 6.0329 -1.6738 1.3149 35 1 5.6373 -3.9392 -3.0273 36 1 5.6382 -4.9599 -1.5690 37 1 8.7101 -6.8624 -2.4655 38 1 8.6713 -5.4044 -1.4448 39 1 7.4333 -6.6670 -1.2411 40 1 7.4296 -4.2130 -4.7458 41 1 8.6692 -3.9714 -3.4914 42 1 8.7085 -5.4290 -4.5118 43 1 8.6759 -8.2720 -4.9776 44 1 6.0344 -0.1031 -0.9202 45 1 6.0632 -1.0110 -2.4538 46 1 3.8124 -1.8953 -2.0213 47 1 3.7721 -0.1209 -1.8796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365038019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:38 Heat of formation + Delta-G solvation = -116.778792 kcal Electronic energy + Delta-G solvation = -28340.463444 eV Core-core repulsion = 24457.127142 eV Total energy + Delta-G solvation = -3883.336302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16433 -38.23451 -36.64538 -36.29811 -35.34974 -34.77156 -31.72068 -31.58869 -31.23667 -29.29972 -26.69653 -25.74218 -25.25668 -24.13332 -23.56978 -20.80647 -20.72771 -19.37323 -18.62177 -17.59008 -16.98983 -16.41137 -15.96709 -15.88572 -15.52632 -15.37471 -14.80689 -14.51741 -14.45163 -14.05157 -13.85670 -13.60257 -13.23230 -13.03069 -12.95361 -12.66633 -12.53324 -12.42617 -12.33682 -12.05123 -11.57497 -11.55012 -11.37149 -11.17109 -11.09841 -11.03235 -10.95883 -10.73901 -10.70348 -10.40752 -10.30046 -10.16295 -10.10516 -9.68022 -9.60869 -9.31812 -8.98310 -8.65287 -8.43019 -6.06163 -4.18401 0.79995 2.38288 2.92672 3.05307 3.23034 3.30573 3.31836 4.30610 4.36737 4.40277 4.52223 4.57838 4.69905 4.82546 4.84690 4.96431 5.06188 5.07546 5.18876 5.19226 5.32446 5.47590 5.52028 5.60379 5.61488 5.64955 5.71962 5.82408 5.85792 6.06506 6.12784 6.24093 6.35369 6.65271 6.67610 6.77130 6.88268 7.01902 7.23781 7.28732 7.47704 7.64873 7.95527 7.96370 8.06854 8.30196 8.80013 9.47113 10.95109 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.003508 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.306483 B = 7980.545021 C = 9091.153371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.510 3.490 3 O -0.548 6.548 4 N -0.727 5.727 5 C 0.145 3.855 6 C -0.144 4.144 7 C 0.126 3.874 8 N -1.010 6.010 9 S 2.592 3.408 10 O -0.962 6.962 11 O -0.961 6.961 12 C -0.581 4.581 13 C 0.082 3.918 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.125 3.875 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.401 0.599 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.027 0.973 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.095 0.905 43 H 0.262 0.738 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.270 10.606 9.666 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.426 6.426 4 N -0.378 5.378 5 C 0.041 3.959 6 C -0.184 4.184 7 C 0.000 4.000 8 N -0.846 5.846 9 S 2.691 3.309 10 O -0.952 6.952 11 O -0.951 6.951 12 C -0.714 4.714 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.222 4.222 16 C -0.541 4.541 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.001 4.001 25 C -0.186 4.186 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.730 11.389 9.691 19.006 hybrid contribution -1.609 -1.426 -0.728 2.270 sum -13.338 9.964 8.963 18.908 Atomic orbital electron populations 1.21859 0.91837 1.04204 1.05250 1.20824 0.90573 0.83592 0.75339 1.90731 1.70742 1.31417 1.49674 1.46280 1.07417 1.08763 1.75380 1.20934 0.79081 0.98984 0.96903 1.22252 0.96860 0.97363 1.01911 1.21282 0.92354 1.03103 0.83274 1.58091 1.63654 1.38399 1.24487 1.05772 0.75325 0.75087 0.74675 1.93532 1.70634 1.78177 1.52876 1.93536 1.70675 1.66584 1.64336 1.30572 1.14077 1.14697 1.12074 1.17925 0.91242 0.90735 0.92098 1.22272 1.00342 1.01794 0.97725 1.22278 1.00351 0.99344 1.00192 1.20933 0.92452 1.09758 1.31000 0.92374 1.24941 0.95033 0.97600 0.96168 1.69799 1.08118 1.32783 1.41416 0.86541 0.80247 0.80852 0.80019 1.20644 1.21112 1.19995 1.21409 0.92839 0.87849 0.97993 1.22420 0.96107 1.03252 0.96849 0.90585 0.88847 0.88766 0.76466 0.89196 0.90464 0.90116 0.88450 0.91049 0.86546 0.86563 0.88649 0.95371 0.94509 0.94501 0.95373 0.88653 0.92718 0.91051 0.88618 0.90895 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.39 36.01 0.37 -0.53 16 2 C 0.51 4.75 7.90 -10.98 -0.09 4.66 16 3 O -0.55 -7.63 16.76 5.56 0.09 -7.54 16 4 N -0.73 -5.63 5.08 -53.77 -0.27 -5.90 16 5 C 0.15 1.37 2.41 -67.89 -0.16 1.20 16 6 C -0.14 -1.22 5.55 -26.61 -0.15 -1.37 16 7 C 0.13 1.39 6.31 -3.71 -0.02 1.37 16 8 N -1.01 -13.73 3.21 -113.27 -0.36 -14.09 16 9 S 2.59 47.17 4.45 -107.50 -0.48 46.70 16 10 O -0.96 -19.63 14.35 -57.54 -0.83 -20.45 16 11 O -0.96 -19.93 14.33 -57.54 -0.82 -20.76 16 12 C -0.58 -10.96 5.12 37.16 0.19 -10.77 16 13 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 14 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 15 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 16 C -0.50 -12.93 8.01 -34.44 -0.28 -13.21 16 17 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 19 N -0.88 -23.86 9.35 55.43 0.52 -23.35 16 20 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.13 1.52 6.34 -3.48 -0.02 1.50 16 25 C -0.15 -1.53 5.67 -26.39 -0.15 -1.68 16 26 H 0.08 0.23 7.91 -51.92 -0.41 -0.18 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.40 2.03 8.44 -40.82 -0.34 1.69 16 30 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.11 7.10 -51.93 -0.37 0.74 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 38 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 42 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 43 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.22 7.09 -51.93 -0.37 0.85 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -33.76 372.26 -9.16 -42.93 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -7.70 Total: 4.31 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 0.10 Total: -22.74 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.12 Total: -43.34 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -1.56 Total: -48.75 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.48 Total: 46.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.76 -9.16 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365038019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.853 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds