Wall clock time and date at job start Sat Apr 11 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46903 * 111.00156 * 2 1 4 4 C 1.50694 * 109.47181 * 66.05120 * 3 2 1 5 5 O 1.21278 * 120.00074 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00007 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99914 * 179.97438 * 6 4 3 8 8 C 1.50700 * 109.46992 * 90.00107 * 7 6 4 9 9 H 1.08007 * 120.00159 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00178 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00403 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99879 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47142 * 90.00416 * 12 10 8 14 14 H 1.48499 * 109.47212 * 210.00250 * 12 10 8 15 15 H 1.48504 * 109.47023 * 330.00284 * 12 10 8 16 16 C 1.46496 * 119.99922 * 359.97438 * 6 4 3 17 17 C 1.53008 * 109.46972 * 90.00495 * 16 6 4 18 18 C 1.47199 * 109.47092 * 179.97438 * 17 16 6 19 19 N 6.68959 * 104.77909 * 339.68572 * 2 1 3 20 20 C 1.46902 * 110.99790 * 236.04500 * 2 1 3 21 21 C 1.50691 * 109.47243 * 293.95487 * 20 2 1 22 22 C 1.38085 * 119.58646 * 95.02210 * 21 20 2 23 23 C 1.38784 * 119.29420 * 179.97438 * 22 21 20 24 24 C 1.38424 * 118.48103 * 359.74525 * 23 22 21 25 25 C 1.38879 * 119.11183 * 0.49490 * 24 23 22 26 26 O 1.35677 * 119.68343 * 179.77049 * 25 24 23 27 27 N 1.31942 * 119.58389 * 274.99779 * 21 20 2 28 28 H 1.08997 * 109.47141 * 183.95933 * 1 2 3 29 29 H 1.09007 * 109.46532 * 303.95041 * 1 2 3 30 30 H 1.08999 * 109.47199 * 63.95263 * 1 2 3 31 31 H 1.09004 * 109.46916 * 186.05127 * 3 2 1 32 32 H 1.08996 * 109.46859 * 306.04389 * 3 2 1 33 33 H 1.09007 * 109.46828 * 209.99555 * 7 6 4 34 34 H 1.08997 * 109.47099 * 330.00143 * 7 6 4 35 35 H 0.97000 * 120.00348 * 179.97438 * 11 10 8 36 36 H 1.08999 * 109.47414 * 210.00188 * 16 6 4 37 37 H 1.08991 * 109.47669 * 330.00346 * 16 6 4 38 38 H 1.09001 * 109.47011 * 299.99580 * 17 16 6 39 39 H 1.08994 * 109.46942 * 59.99992 * 17 16 6 40 40 H 1.09000 * 109.47357 * 173.95016 * 20 2 1 41 41 H 1.09001 * 109.46766 * 53.95397 * 20 2 1 42 42 H 1.08008 * 120.35502 * 359.95265 * 22 21 20 43 43 H 1.07999 * 120.76320 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.44483 * 180.24926 * 24 23 22 45 45 H 0.96700 * 114.00259 * 269.72871 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6371 2.0471 1.2984 5 8 1.0049 1.4456 2.1407 6 7 2.0182 3.3201 1.5233 7 6 1.6693 3.9772 2.7854 8 6 2.7620 3.7376 3.7952 9 1 3.6293 3.1539 3.5242 10 6 2.6539 4.2626 5.0655 11 7 3.6072 4.0531 5.9470 12 14 1.1534 5.2715 5.5346 13 1 0.1059 4.3743 6.0851 14 1 1.5333 6.2763 6.5599 15 1 0.6281 5.9661 4.3317 16 6 2.7813 4.0469 0.5056 17 6 1.8162 4.7719 -0.4345 18 6 2.5830 5.5026 -1.4567 19 7 3.1754 6.0660 -2.2456 20 6 1.9954 -0.7660 -1.1376 21 6 1.6368 -2.2204 -0.9729 22 6 0.5028 -2.7166 -1.5849 23 6 0.1787 -4.0570 -1.4296 24 6 1.0136 -4.8538 -0.6654 25 6 2.1351 -4.2861 -0.0748 26 8 2.9588 -5.0553 0.6805 27 7 2.4107 -3.0037 -0.2460 28 1 -0.3633 -1.0252 0.0710 29 1 -0.3633 0.5740 0.8526 30 1 -0.3633 0.4513 -0.9233 31 1 3.0798 1.3443 -0.1083 32 1 1.5611 1.9273 -0.8309 33 1 1.5574 5.0485 2.6184 34 1 0.7314 3.5680 3.1609 35 1 3.5313 4.4228 6.8405 36 1 3.4320 4.7748 0.9903 37 1 3.3860 3.3433 -0.0665 38 1 1.1656 4.0440 -0.9192 39 1 1.2116 5.4756 0.1376 40 1 3.0796 -0.6611 -1.1757 41 1 1.5610 -0.3872 -2.0628 42 1 -0.1254 -2.0683 -2.1780 43 1 -0.7024 -4.4702 -1.8981 44 1 0.7938 -5.9021 -0.5269 45 1 2.7236 -5.0804 1.6181 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365333975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:41 Heat of formation + Delta-G solvation = 12.874176 kcal Electronic energy + Delta-G solvation = -27914.474376 eV Core-core repulsion = 23933.609049 eV Total energy + Delta-G solvation = -3980.865327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73786 -39.59615 -37.73115 -36.99967 -36.40451 -35.23655 -32.88668 -32.74235 -31.20073 -30.99492 -29.01978 -27.55218 -27.09295 -24.17344 -23.84897 -23.40867 -22.22513 -21.25704 -18.83230 -18.53335 -17.75923 -16.95558 -16.82660 -16.71663 -16.55992 -16.10205 -15.59654 -15.53274 -14.96990 -14.64966 -14.52295 -14.40031 -13.86711 -13.71644 -13.57054 -13.14783 -13.05178 -12.84296 -12.56736 -12.52410 -12.42253 -12.21476 -12.09629 -11.93766 -11.75635 -11.65104 -11.55682 -11.37142 -11.07291 -10.85795 -10.56573 -10.20250 -10.11382 -9.59092 -9.55734 -9.09965 -9.07706 -8.60930 -8.28133 -7.88330 -6.09877 -4.09419 0.74189 1.00086 2.64676 2.73144 3.10345 3.23119 3.26692 3.31778 3.34483 3.47554 3.61594 3.94964 4.20659 4.31939 4.37053 4.48767 4.76532 4.81765 4.85179 4.94281 5.01370 5.09734 5.11950 5.20705 5.23391 5.27800 5.37893 5.38415 5.48895 5.57539 5.62839 5.72160 5.78866 5.86329 6.00368 6.16967 6.25250 6.55741 6.81330 6.92920 6.98995 7.21399 7.30121 7.49507 7.57263 7.81176 8.09277 8.44007 8.87293 8.95648 9.49399 11.03473 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.003098 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.256584 B = 9036.722500 C =10808.158217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.513 5.513 3 C 0.036 3.964 4 C 0.512 3.488 5 O -0.512 6.512 6 N -0.594 5.594 7 C 0.217 3.783 8 C -0.531 4.531 9 H 0.076 0.924 10 C 0.073 3.927 11 N -0.895 5.895 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.265 1.265 16 C 0.117 3.883 17 C -0.050 4.050 18 C 0.215 3.785 19 N -0.442 5.442 20 C 0.101 3.899 21 C 0.170 3.830 22 C -0.179 4.179 23 C -0.061 4.061 24 C -0.191 4.191 25 C 0.314 3.686 26 O -0.485 6.485 27 N -0.481 5.481 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.020 0.980 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -11.680 -17.385 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.237 5.237 3 C -0.095 4.095 4 C 0.298 3.702 5 O -0.387 6.387 6 N -0.327 5.327 7 C 0.096 3.904 8 C -0.569 4.569 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.702 3.298 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.190 1.190 16 C -0.010 4.010 17 C -0.092 4.092 18 C -0.103 4.103 19 N -0.119 5.119 20 C -0.027 4.027 21 C 0.031 3.969 22 C -0.199 4.199 23 C -0.087 4.087 24 C -0.213 4.213 25 C 0.135 3.865 26 O -0.293 6.293 27 N -0.200 5.200 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.038 0.962 31 H 0.122 0.878 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.186 -11.164 -17.550 22.006 hybrid contribution -2.003 0.352 0.125 2.038 sum -9.190 -10.812 -17.426 22.472 Atomic orbital electron populations 1.22643 0.86471 1.02652 1.01364 1.61464 1.08753 1.12161 1.41360 1.22114 1.02036 0.89072 0.96255 1.20143 0.80283 0.81516 0.88253 1.90664 1.39146 1.62736 1.46117 1.47888 1.54614 1.12253 1.17934 1.19699 0.97601 0.92132 0.80921 1.21321 1.05747 1.34158 0.95676 0.90594 1.24861 0.96033 0.95943 0.96136 1.69895 1.33079 1.45251 1.05141 0.86879 0.83667 0.80412 0.78838 1.19950 1.21164 1.19024 1.21329 0.92873 0.97138 0.89621 1.19899 0.97657 0.99231 0.92397 1.29063 0.93811 0.93531 0.93880 1.81228 1.09453 1.09961 1.11285 1.21031 1.01946 0.87671 0.92043 1.20743 0.90071 0.95052 0.91056 1.21992 0.98793 0.96453 1.02680 1.21453 0.98476 0.93244 0.95482 1.22097 0.95095 1.01999 1.02072 1.19186 0.87438 0.86598 0.93298 1.84743 1.54672 1.65644 1.24193 1.66968 1.31944 1.04763 1.16282 0.91773 0.88798 0.96159 0.87844 0.92281 0.95070 0.94342 0.92542 0.88454 0.90333 0.87668 0.86664 0.88603 0.92784 0.84587 0.84360 0.84335 0.73856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.84 60.06 0.53 0.73 16 2 N -0.51 -6.84 4.49 -245.83 -1.10 -7.94 16 3 C 0.04 0.45 4.00 -4.98 -0.02 0.43 16 4 C 0.51 8.98 7.37 -10.99 -0.08 8.89 16 5 O -0.51 -11.36 13.91 5.56 0.08 -11.28 16 6 N -0.59 -10.21 2.46 -175.06 -0.43 -10.64 16 7 C 0.22 4.70 4.23 -5.19 -0.02 4.68 16 8 C -0.53 -14.36 9.94 -34.44 -0.34 -14.70 16 9 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 11 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 12 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 16 C 0.12 1.44 5.17 -4.04 -0.02 1.42 16 17 C -0.05 -0.46 6.03 -29.51 -0.18 -0.63 16 18 C 0.22 2.37 15.43 -20.76 -0.32 2.05 16 19 N -0.44 -6.13 18.54 42.16 0.78 -5.34 16 20 C 0.10 1.08 5.28 -4.98 -0.03 1.06 16 21 C 0.17 1.97 5.64 -82.61 -0.47 1.50 16 22 C -0.18 -1.58 8.35 -39.44 -0.33 -1.91 16 23 C -0.06 -0.47 10.17 -39.31 -0.40 -0.87 16 24 C -0.19 -1.72 10.04 -39.28 -0.39 -2.11 16 25 C 0.31 3.73 7.74 -17.12 -0.13 3.59 16 26 O -0.48 -5.25 13.56 -18.73 -0.25 -5.50 16 27 N -0.48 -6.67 10.30 -9.55 -0.10 -6.77 16 28 H 0.06 0.76 6.40 -51.93 -0.33 0.42 16 29 H 0.09 1.42 5.82 -51.92 -0.30 1.12 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 1.19 7.19 -51.93 -0.37 0.82 16 32 H 0.06 0.54 7.16 -51.93 -0.37 0.17 16 33 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 34 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 37 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 38 H 0.11 0.72 7.22 -51.93 -0.37 0.35 16 39 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 42 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.40 2.60 9.06 45.56 0.41 3.02 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -37.71 383.26 -6.80 -44.51 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.35 Total: 1.44 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.30 Total: 6.07 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.08 Total: -56.91 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.18 Total: -16.78 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.71 -6.80 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365333975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.383 kcal (2) G-P(sol) polarization free energy of solvation -37.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds