Wall clock time and date at job start Sat Apr 11 2020 03:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46491 * 120.00469 * 2 1 4 4 C 1.50702 * 109.46957 * 84.99786 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 S 1.65605 * 119.99669 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40494 * 23.53861 * 12 2 1 14 14 O 1.42100 * 106.40469 * 156.46268 * 12 2 1 15 15 N 1.65600 * 107.21916 * 270.00001 * 12 2 1 16 16 C 1.46504 * 119.99936 * 64.99931 * 15 12 2 17 17 C 1.53005 * 109.47244 * 165.00277 * 16 15 12 18 18 H 1.09000 * 109.55302 * 305.00011 * 17 16 15 19 19 C 1.53153 * 109.55570 * 65.20372 * 17 16 15 20 20 C 1.53046 * 109.40385 * 178.47350 * 19 17 16 21 21 O 1.43046 * 109.43880 * 300.67154 * 20 19 17 22 22 C 1.42573 * 113.86413 * 58.73394 * 21 20 19 23 23 C 1.53401 * 113.61786 * 171.83376 * 22 21 20 24 24 C 1.53844 * 86.97820 * 220.08706 * 23 22 21 25 25 C 1.53414 * 113.58142 * 73.90304 * 22 21 20 26 26 C 1.52833 * 113.00842 * 302.97031 * 22 21 20 27 27 H 1.09000 * 109.47063 * 89.99777 * 1 2 3 28 28 H 1.08999 * 109.47705 * 209.99937 * 1 2 3 29 29 H 1.09003 * 109.46644 * 330.00247 * 1 2 3 30 30 H 1.09004 * 109.47166 * 325.00052 * 3 2 1 31 31 H 1.08994 * 109.47507 * 204.99759 * 3 2 1 32 32 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 33 33 H 0.97003 * 120.00610 * 245.00210 * 15 12 2 34 34 H 1.08999 * 109.47118 * 285.00054 * 16 15 12 35 35 H 1.08998 * 109.46999 * 44.99964 * 16 15 12 36 36 H 1.09001 * 109.48416 * 298.45323 * 19 17 16 37 37 H 1.08999 * 109.48186 * 58.49216 * 19 17 16 38 38 H 1.09002 * 109.47134 * 60.65960 * 20 19 17 39 39 H 1.09002 * 109.47254 * 180.67275 * 20 19 17 40 40 H 1.09007 * 113.63177 * 334.60891 * 23 22 21 41 41 H 1.09000 * 113.63346 * 105.56027 * 23 22 21 42 42 H 1.09002 * 113.60245 * 270.60102 * 24 23 22 43 43 H 1.08994 * 113.68224 * 139.74253 * 24 23 22 44 44 H 1.08994 * 113.63326 * 254.47114 * 25 22 21 45 45 H 1.09000 * 113.63072 * 25.34268 * 25 22 21 46 46 H 1.09003 * 109.48231 * 293.98324 * 26 22 21 47 47 H 1.09003 * 109.65241 * 173.64729 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7655 1.4154 5 1 1.9289 1.1934 2.2333 6 6 3.0053 2.9476 1.6670 7 7 3.5081 3.6441 0.6711 8 14 3.1903 3.5596 3.4221 9 1 3.9344 2.5532 4.2214 10 1 3.9372 4.8432 3.4225 11 1 1.8462 3.7693 4.0176 12 16 2.2929 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1567 -0.5449 15 7 2.5380 -1.8595 1.5809 16 6 1.3945 -2.1790 2.4392 17 6 1.8873 -2.8866 3.7031 18 1 2.4786 -3.7592 3.4255 19 6 2.7487 -1.9246 4.5265 20 6 3.2083 -2.6235 5.8081 21 8 2.0647 -3.0292 6.5655 22 6 1.1919 -3.9120 5.8642 23 6 0.0782 -4.4995 6.7403 24 6 0.3102 -5.8290 6.0018 25 6 1.7418 -5.3376 5.7266 26 6 0.6851 -3.3284 4.5458 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6502 2.0042 -0.5895 31 1 3.1858 1.1175 -0.4342 32 1 3.9748 4.4759 0.8481 33 1 3.4387 -1.8970 1.9392 34 1 0.8793 -1.2590 2.7154 35 1 0.7078 -2.8325 1.9012 36 1 3.6196 -1.6260 3.9429 37 1 2.1632 -1.0419 4.7837 38 1 3.8033 -3.4998 5.5507 39 1 3.8116 -1.9358 6.4007 40 1 0.3306 -4.5386 7.8001 41 1 -0.9020 -4.0610 6.5534 42 1 -0.2940 -5.9391 5.1012 43 1 0.2660 -6.7037 6.6505 44 1 2.0996 -5.5730 4.7243 45 1 2.4552 -5.6077 6.5052 46 1 0.0471 -2.4685 4.7502 47 1 0.1179 -4.0851 4.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365404993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:46 Heat of formation + Delta-G solvation = -113.647575 kcal Electronic energy + Delta-G solvation = -28446.305830 eV Core-core repulsion = 24563.105308 eV Total energy + Delta-G solvation = -3883.200522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74234 -37.09173 -36.61594 -35.82364 -35.46600 -35.22690 -32.51445 -32.49693 -29.75976 -27.81025 -26.32230 -26.04115 -25.08318 -24.00682 -22.91684 -22.30183 -20.51651 -18.92195 -18.64557 -17.29419 -16.79053 -16.74783 -16.43026 -16.11889 -15.93720 -15.44761 -14.86409 -14.74023 -14.35808 -14.29160 -13.54474 -13.44965 -13.37832 -13.19629 -13.07752 -12.53410 -12.43782 -12.30166 -12.17936 -11.85418 -11.70561 -11.51865 -11.44186 -11.39007 -11.18466 -11.13666 -11.13133 -11.02713 -10.90483 -10.78970 -10.53760 -10.49437 -10.13488 -10.04228 -9.81125 -9.47228 -9.14478 -8.50854 -8.06627 -6.12354 -4.19124 1.29901 3.24501 3.30638 3.30901 3.50264 3.63333 4.15695 4.27492 4.32482 4.34948 4.48254 4.53825 4.62746 4.79554 4.92471 5.02167 5.08037 5.22006 5.27435 5.33587 5.36482 5.43654 5.50122 5.53383 5.55437 5.63075 5.67221 5.67569 5.77603 5.78735 5.90852 5.95486 6.05251 6.09570 6.10919 6.19255 6.28396 6.35645 6.55078 7.18631 7.20185 7.36563 7.46491 7.63608 7.84449 8.13617 8.85341 9.46876 10.95704 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.004324 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.709775 B = 6474.531099 C = 8049.784454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.996 5.996 3 C 0.245 3.755 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 S 2.790 3.210 13 O -1.002 7.002 14 O -0.980 6.980 15 N -1.125 6.125 16 C 0.128 3.872 17 C -0.092 4.092 18 H 0.079 0.921 19 C -0.154 4.154 20 C 0.062 3.938 21 O -0.368 6.368 22 C 0.093 3.907 23 C -0.122 4.122 24 C -0.139 4.139 25 C -0.163 4.163 26 C -0.120 4.120 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 -15.629 10.064 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.839 5.839 3 C 0.123 3.877 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 S 2.797 3.203 13 O -0.986 6.986 14 O -0.964 6.964 15 N -0.884 5.884 16 C 0.002 3.998 17 C -0.112 4.112 18 H 0.097 0.903 19 C -0.192 4.192 20 C -0.014 4.014 21 O -0.287 6.287 22 C 0.054 3.946 23 C -0.159 4.159 24 C -0.177 4.177 25 C -0.201 4.201 26 C -0.158 4.158 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.769 -15.858 9.334 19.284 hybrid contribution 0.535 0.769 1.247 1.560 sum -5.234 -15.089 10.581 19.158 Atomic orbital electron populations 1.21245 0.80215 1.01995 1.00717 1.57575 1.14121 1.23439 1.88728 1.19207 0.92173 0.78811 0.97505 1.21512 1.36481 1.06967 0.92899 0.91984 1.24959 0.95202 0.96545 0.97205 1.69927 1.36628 1.15301 1.30980 0.86628 0.78256 0.78185 0.84723 1.20120 1.21222 1.20235 1.01594 0.72946 0.72765 0.72989 1.93534 1.67614 1.60196 1.77209 1.93589 1.40968 1.85189 1.76655 1.55960 1.14558 1.86104 1.31775 1.21200 0.88092 0.99589 0.90959 1.21374 0.96867 0.98625 0.94351 0.90299 1.22251 1.01160 0.99236 0.96531 1.22554 0.87698 0.98229 0.92939 1.87936 1.35225 1.65618 1.39920 1.22659 0.91465 0.87891 0.92634 1.23001 0.97733 0.95417 0.99768 1.22719 0.96920 0.97222 1.00815 1.23528 0.97365 0.96748 1.02475 1.21871 0.97807 1.01777 0.94367 0.93719 0.92996 0.90785 0.94454 0.93126 0.92525 0.75410 0.91422 0.90857 0.90167 0.90297 0.93297 0.88918 0.89290 0.90677 0.89786 0.90975 0.91095 0.89581 0.90255 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.76 10.31 59.85 0.62 2.38 16 2 N -1.00 -20.24 3.23 -123.06 -0.40 -20.64 16 3 C 0.25 6.05 5.41 -5.20 -0.03 6.02 16 4 C -0.54 -13.93 9.38 -34.44 -0.32 -14.25 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 S 2.79 54.21 6.11 -107.50 -0.66 53.56 16 13 O -1.00 -20.12 16.68 -57.17 -0.95 -21.07 16 14 O -0.98 -22.55 16.69 -57.17 -0.95 -23.51 16 15 N -1.12 -17.60 5.94 -10.61 -0.06 -17.66 16 16 C 0.13 1.69 5.65 -4.04 -0.02 1.67 16 17 C -0.09 -1.03 2.29 -90.38 -0.21 -1.24 16 18 H 0.08 0.83 7.62 -51.93 -0.40 0.44 16 19 C -0.15 -1.85 5.23 -26.63 -0.14 -1.99 16 20 C 0.06 0.69 6.74 37.18 0.25 0.94 16 21 O -0.37 -4.48 10.53 -35.23 -0.37 -4.85 16 22 C 0.09 0.94 1.16 -90.28 -0.10 0.83 16 23 C -0.12 -1.04 7.50 -26.08 -0.20 -1.24 16 24 C -0.14 -1.03 7.73 -25.85 -0.20 -1.23 16 25 C -0.16 -1.42 6.90 -26.08 -0.18 -1.60 16 26 C -0.12 -1.19 4.46 -26.65 -0.12 -1.31 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 31 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.41 5.96 7.44 -34.48 -0.26 5.70 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.92 7.75 -51.93 -0.40 0.51 16 36 H 0.08 0.98 6.96 -51.93 -0.36 0.62 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.49 7.84 -51.93 -0.41 0.08 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.08 0.57 7.61 -51.93 -0.40 0.18 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.61 7.57 -51.93 -0.39 0.22 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.68 7.31 -51.93 -0.38 0.30 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -32.21 381.87 -10.62 -42.82 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.94 Total: 4.09 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.75 Total: -9.39 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.28 Total: -62.94 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.28 Total: -49.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.66 Total: 53.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.21 -10.62 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365404993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.825 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds