Wall clock time and date at job start Sat Apr 11 2020 03:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 120.00298 * 2 1 4 4 H 1.07998 * 120.00216 * 321.76476 * 3 2 1 5 5 C 1.38813 * 119.99672 * 141.75812 * 3 2 1 6 6 N 1.31623 * 119.99662 * 156.25163 * 5 3 2 7 7 Si 1.86803 * 120.00341 * 336.25373 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.45291 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.45570 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.45993 * 7 5 3 11 11 C 1.46507 * 119.99575 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47102 * 89.99714 * 11 2 1 13 13 H 1.08997 * 110.88658 * 57.42988 * 12 11 2 14 14 C 1.55160 * 111.00444 * 181.34878 * 12 11 2 15 15 C 1.54317 * 102.94449 * 153.58032 * 14 12 11 16 16 N 1.47034 * 107.27011 * 337.80652 * 15 14 12 17 17 C 1.34777 * 125.64831 * 178.90670 * 16 15 14 18 18 O 1.21483 * 119.99730 * 180.02562 * 17 16 15 19 19 C 1.48334 * 119.99781 * 0.04095 * 17 16 15 20 20 C 1.39306 * 119.56816 * 179.72704 * 19 17 16 21 21 C 1.38450 * 119.19091 * 179.75045 * 20 19 17 22 22 C 1.39871 * 118.35565 * 0.51467 * 21 20 19 23 23 C 1.48005 * 120.46555 * 179.72837 * 22 21 20 24 24 N 1.34773 * 120.00256 * 180.02562 * 23 22 21 25 25 O 1.21537 * 119.99664 * 0.02562 * 23 22 21 26 26 C 1.39734 * 119.07459 * 359.74724 * 22 21 20 27 27 N 1.31410 * 120.71684 * 359.97438 * 26 22 21 28 28 C 1.47426 * 108.70079 * 358.94205 * 16 15 14 29 29 H 1.08998 * 109.47162 * 85.35368 * 1 2 3 30 30 H 1.09006 * 109.46395 * 325.36215 * 1 2 3 31 31 H 1.08998 * 109.47252 * 205.35940 * 1 2 3 32 32 H 0.97001 * 119.99496 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46840 * 210.00311 * 11 2 1 34 34 H 1.08997 * 109.46788 * 329.99867 * 11 2 1 35 35 H 1.08996 * 110.71978 * 271.94165 * 14 12 11 36 36 H 1.08996 * 110.72078 * 35.21396 * 14 12 11 37 37 H 1.09000 * 109.88293 * 218.39546 * 15 14 12 38 38 H 1.08993 * 110.01455 * 97.29539 * 15 14 12 39 39 H 1.08000 * 120.40340 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.82853 * 180.23955 * 21 20 19 41 41 H 0.96996 * 120.00161 * 0.02562 * 24 23 22 42 42 H 0.97000 * 120.00298 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.63877 * 180.02562 * 26 22 21 44 44 H 1.08996 * 110.36552 * 265.28740 * 28 16 15 45 45 H 1.08999 * 110.45350 * 143.01346 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7836 2.0209 -0.5788 5 6 3.3145 1.3147 0.7441 6 7 4.2098 2.2211 0.4134 7 14 3.6113 0.2018 2.2148 8 1 4.4384 -0.9592 1.7980 9 1 4.3222 0.9610 3.2746 10 1 2.3093 -0.2815 2.7406 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9452 -1.9920 14 6 3.1981 -3.0699 -1.4855 15 6 2.7692 -3.6571 -2.8466 16 7 1.5087 -3.0025 -3.2267 17 6 0.8193 -3.2258 -4.3631 18 8 -0.2152 -2.6247 -4.5739 19 6 1.3233 -4.2057 -5.3560 20 6 0.6006 -4.4337 -6.5249 21 6 1.0809 -5.3462 -7.4487 22 6 2.2759 -6.0145 -7.1628 23 6 2.8286 -7.0039 -8.1147 24 7 3.9805 -7.6429 -7.8295 25 8 2.2438 -7.2401 -9.1535 26 6 2.9404 -5.7354 -5.9657 27 7 2.4542 -4.8578 -5.1169 28 6 1.1244 -2.0609 -2.1594 29 1 -0.3633 0.0832 -1.0243 30 1 -0.3632 0.8456 0.5842 31 1 -0.3634 -0.9286 0.4401 32 1 5.0238 2.3109 0.9332 33 1 3.1499 -1.1388 0.5134 34 1 1.6083 -2.0286 0.5129 35 1 4.2771 -2.9192 -1.4533 36 1 2.8730 -3.7135 -0.6681 37 1 2.6154 -4.7323 -2.7545 38 1 3.5330 -3.4549 -3.5974 39 1 -0.3214 -3.9024 -6.7098 40 1 0.5440 -5.5405 -8.3654 41 1 4.4471 -7.4547 -7.0002 42 1 4.3426 -8.2916 -8.4532 43 1 3.8639 -6.2459 -5.7359 44 1 0.4329 -2.5371 -1.4644 45 1 0.6750 -1.1643 -2.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481508607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:19 Heat of formation + Delta-G solvation = 4.096158 kcal Electronic energy + Delta-G solvation = -28151.443841 eV Core-core repulsion = 24170.197870 eV Total energy + Delta-G solvation = -3981.245971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26554 -39.97282 -38.95549 -37.62076 -35.56945 -34.46104 -33.24634 -32.11169 -31.68064 -31.17543 -28.90705 -27.09210 -26.07187 -24.95168 -24.10743 -23.06562 -21.54585 -21.08583 -20.25771 -19.88007 -18.68938 -17.90810 -17.29115 -16.81593 -16.58221 -16.01649 -15.61776 -15.52381 -15.35776 -15.17494 -14.77268 -14.42078 -13.98629 -13.67659 -13.63564 -13.50599 -13.32845 -12.93490 -12.90479 -12.45473 -12.43699 -12.19522 -11.77210 -11.45570 -11.01200 -10.87262 -10.84364 -10.82163 -10.46662 -10.44637 -10.30743 -10.23471 -10.19039 -9.83420 -9.74188 -9.71897 -9.54236 -8.53577 -8.48904 -6.79905 -6.02635 -3.43586 -0.17073 0.71228 2.06306 2.77799 2.81923 2.89566 3.26644 3.44328 3.49987 3.50884 3.62684 4.17708 4.20267 4.35957 4.47840 4.49701 4.67320 4.84727 4.91126 5.15152 5.17525 5.30071 5.37014 5.45943 5.49643 5.59784 5.73118 5.91959 5.97947 6.00660 6.11034 6.16115 6.17694 6.22021 6.28453 6.31120 6.49221 6.61652 6.68679 6.70754 6.76463 6.91114 7.17355 7.54125 7.63067 8.03911 8.06171 8.38140 8.98166 9.69364 10.11157 11.13085 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002514 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.986224 B =11134.467701 C =11810.977599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.611 5.611 3 C -0.269 4.269 4 H 0.077 0.923 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.874 3.126 8 H -0.284 1.284 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.137 4.137 15 C 0.119 3.881 16 N -0.593 5.593 17 C 0.574 3.426 18 O -0.532 6.532 19 C 0.116 3.884 20 C -0.119 4.119 21 C -0.019 4.019 22 C -0.179 4.179 23 C 0.570 3.430 24 N -0.847 5.847 25 O -0.534 6.534 26 C 0.132 3.868 27 N -0.454 5.454 28 C 0.118 3.882 29 H 0.012 0.988 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.403 0.597 42 H 0.408 0.592 43 H 0.165 0.835 44 H 0.065 0.935 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -21.408 -12.429 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.335 5.335 3 C -0.398 4.398 4 H 0.095 0.905 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.704 3.296 8 H -0.212 1.212 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.023 3.977 12 C -0.135 4.135 13 H 0.110 0.890 14 C -0.176 4.176 15 C -0.003 4.003 16 N -0.324 5.324 17 C 0.360 3.640 18 O -0.409 6.409 19 C -0.022 4.022 20 C -0.139 4.139 21 C -0.046 4.046 22 C -0.185 4.185 23 C 0.355 3.645 24 N -0.412 5.412 25 O -0.411 6.411 26 C -0.029 4.029 27 N -0.165 5.165 28 C -0.003 4.003 29 H 0.030 0.970 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.232 0.768 42 H 0.240 0.760 43 H 0.182 0.818 44 H 0.084 0.916 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.369 -20.801 -12.359 24.198 hybrid contribution 0.465 -0.975 0.227 1.103 sum 0.095 -21.776 -12.132 24.928 Atomic orbital electron populations 1.21183 0.84500 0.98807 0.97910 1.44061 1.00777 1.01961 1.86676 1.18739 1.06161 0.90938 1.23930 0.90518 1.25505 0.96749 0.96411 0.97695 1.69906 1.08145 1.36641 1.39095 0.86958 0.77957 0.79924 0.84728 1.21241 1.22898 1.19449 1.21131 0.96730 0.87749 0.92050 1.23085 0.94245 0.95801 1.00405 0.88952 1.22820 1.01294 0.97417 0.96087 1.22107 0.85215 0.96682 0.96323 1.48475 1.24324 1.41254 1.18343 1.17472 0.83764 0.82178 0.80626 1.90805 1.23482 1.49846 1.76761 1.21483 0.91305 0.95165 0.94206 1.22187 1.01498 0.97512 0.92751 1.21778 0.92901 0.91047 0.98827 1.21101 0.98711 1.01160 0.97517 1.18052 0.80685 0.80281 0.85476 1.43725 1.25630 1.45686 1.26138 1.90845 1.59649 1.64825 1.25792 1.22987 0.98356 0.93072 0.88520 1.67903 1.11318 1.06103 1.31172 1.22424 0.97902 0.92238 0.87716 0.97024 0.93945 0.95449 0.92715 0.92254 0.94066 0.90059 0.90979 0.91103 0.90721 0.82397 0.82675 0.76756 0.75990 0.81829 0.91645 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.40 9.91 59.85 0.59 3.00 16 2 N -0.61 -14.12 2.38 -181.11 -0.43 -14.56 16 3 C -0.27 -7.38 9.91 -15.06 -0.15 -7.53 16 4 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 5 C 0.04 1.04 5.27 -17.43 -0.09 0.95 16 6 N -0.90 -26.80 13.97 55.49 0.78 -26.03 16 7 Si 0.87 21.44 25.18 -169.99 -4.28 17.16 16 8 H -0.28 -6.62 6.66 56.52 0.38 -6.25 16 9 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 C 0.15 3.03 4.08 -4.04 -0.02 3.01 16 12 C -0.11 -1.99 3.29 -88.47 -0.29 -2.28 16 13 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 14 C -0.14 -1.86 6.42 -24.90 -0.16 -2.02 16 15 C 0.12 1.50 5.40 -3.06 -0.02 1.48 16 16 N -0.59 -8.97 3.33 -171.45 -0.57 -9.54 16 17 C 0.57 8.85 7.85 -12.11 -0.09 8.75 16 18 O -0.53 -9.67 16.57 5.38 0.09 -9.58 16 19 C 0.12 1.42 6.72 -82.93 -0.56 0.86 16 20 C -0.12 -1.22 9.62 -39.11 -0.38 -1.59 16 21 C -0.02 -0.17 9.71 -38.89 -0.38 -0.55 16 22 C -0.18 -1.43 5.90 -104.72 -0.62 -2.05 16 23 C 0.57 4.53 8.06 -12.26 -0.10 4.44 16 24 N -0.85 -3.14 8.83 30.57 0.27 -2.87 16 25 O -0.53 -6.33 17.25 5.33 0.09 -6.23 16 26 C 0.13 0.95 10.71 -17.17 -0.18 0.77 16 27 N -0.45 -4.66 6.82 -9.48 -0.06 -4.72 16 28 C 0.12 1.98 5.36 -2.53 -0.01 1.97 16 29 H 0.01 0.22 7.54 -51.93 -0.39 -0.17 16 30 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 31 H 0.03 0.47 7.84 -51.93 -0.41 0.06 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.06 1.32 3.47 -51.93 -0.18 1.14 16 34 H 0.04 0.74 7.82 -51.93 -0.41 0.34 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 38 H 0.07 0.91 7.40 -51.93 -0.38 0.53 16 39 H 0.16 1.54 7.63 -52.49 -0.40 1.14 16 40 H 0.16 1.18 7.73 -52.49 -0.41 0.78 16 41 H 0.40 0.38 6.89 -40.82 -0.28 0.10 16 42 H 0.41 1.05 8.93 -40.82 -0.36 0.69 16 43 H 0.16 0.51 6.41 -52.49 -0.34 0.17 16 44 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 45 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -35.15 366.86 -7.06 -42.21 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.02 Total: -0.57 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -2.45 Total: 9.20 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.02 Total: -57.71 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.18 Total: -15.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.28 Total: 17.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.15 -7.06 -42.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481508607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.307 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds