Wall clock time and date at job start Sat Apr 11 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 120.00298 * 2 1 4 4 H 1.07998 * 120.00216 * 321.76476 * 3 2 1 5 5 C 1.38813 * 119.99672 * 141.75812 * 3 2 1 6 6 N 1.31623 * 119.99662 * 156.25163 * 5 3 2 7 7 Si 1.86803 * 120.00341 * 336.25373 * 5 3 2 8 8 H 1.48504 * 109.47093 * 95.45291 * 7 5 3 9 9 H 1.48492 * 109.47076 * 215.45570 * 7 5 3 10 10 H 1.48504 * 109.47033 * 335.45993 * 7 5 3 11 11 C 1.46507 * 119.99575 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47102 * 89.99714 * 11 2 1 13 13 H 1.08997 * 110.88658 * 57.42988 * 12 11 2 14 14 C 1.55160 * 111.00444 * 181.34878 * 12 11 2 15 15 C 1.54317 * 102.94449 * 153.58032 * 14 12 11 16 16 N 1.47034 * 107.27011 * 337.80652 * 15 14 12 17 17 C 1.34777 * 125.64831 * 178.90670 * 16 15 14 18 18 O 1.21483 * 119.99730 * 180.02562 * 17 16 15 19 19 C 1.48334 * 119.99781 * 0.04095 * 17 16 15 20 20 C 1.39306 * 119.56816 * 179.72704 * 19 17 16 21 21 C 1.38450 * 119.19091 * 179.75045 * 20 19 17 22 22 C 1.39871 * 118.35565 * 0.51467 * 21 20 19 23 23 C 1.48005 * 120.46555 * 179.72837 * 22 21 20 24 24 N 1.34773 * 120.00256 * 180.02562 * 23 22 21 25 25 O 1.21537 * 119.99664 * 0.02562 * 23 22 21 26 26 C 1.39734 * 119.07459 * 359.74724 * 22 21 20 27 27 N 1.31410 * 120.71684 * 359.97438 * 26 22 21 28 28 C 1.47426 * 108.70079 * 358.94205 * 16 15 14 29 29 H 1.08998 * 109.47162 * 85.35368 * 1 2 3 30 30 H 1.09006 * 109.46395 * 325.36215 * 1 2 3 31 31 H 1.08998 * 109.47252 * 205.35940 * 1 2 3 32 32 H 0.97001 * 119.99496 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.46840 * 210.00311 * 11 2 1 34 34 H 1.08997 * 109.46788 * 329.99867 * 11 2 1 35 35 H 1.08996 * 110.71978 * 271.94165 * 14 12 11 36 36 H 1.08996 * 110.72078 * 35.21396 * 14 12 11 37 37 H 1.09000 * 109.88293 * 218.39546 * 15 14 12 38 38 H 1.08993 * 110.01455 * 97.29539 * 15 14 12 39 39 H 1.08000 * 120.40340 * 359.97438 * 20 19 17 40 40 H 1.08000 * 120.82853 * 180.23955 * 21 20 19 41 41 H 0.96996 * 120.00161 * 0.02562 * 24 23 22 42 42 H 0.97000 * 120.00298 * 179.97438 * 24 23 22 43 43 H 1.07998 * 119.63877 * 180.02562 * 26 22 21 44 44 H 1.08996 * 110.36552 * 265.28740 * 28 16 15 45 45 H 1.08999 * 110.45350 * 143.01346 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7836 2.0209 -0.5788 5 6 3.3145 1.3147 0.7441 6 7 4.2098 2.2211 0.4134 7 14 3.6113 0.2018 2.2148 8 1 4.4384 -0.9592 1.7980 9 1 4.3222 0.9610 3.2746 10 1 2.3093 -0.2815 2.7406 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 3.0020 -0.9452 -1.9920 14 6 3.1981 -3.0699 -1.4855 15 6 2.7692 -3.6571 -2.8466 16 7 1.5087 -3.0025 -3.2267 17 6 0.8193 -3.2258 -4.3631 18 8 -0.2152 -2.6247 -4.5739 19 6 1.3233 -4.2057 -5.3560 20 6 0.6006 -4.4337 -6.5249 21 6 1.0809 -5.3462 -7.4487 22 6 2.2759 -6.0145 -7.1628 23 6 2.8286 -7.0039 -8.1147 24 7 3.9805 -7.6429 -7.8295 25 8 2.2438 -7.2401 -9.1535 26 6 2.9404 -5.7354 -5.9657 27 7 2.4542 -4.8578 -5.1169 28 6 1.1244 -2.0609 -2.1594 29 1 -0.3633 0.0832 -1.0243 30 1 -0.3632 0.8456 0.5842 31 1 -0.3634 -0.9286 0.4401 32 1 5.0238 2.3109 0.9332 33 1 3.1499 -1.1388 0.5134 34 1 1.6083 -2.0286 0.5129 35 1 4.2771 -2.9192 -1.4533 36 1 2.8730 -3.7135 -0.6681 37 1 2.6154 -4.7323 -2.7545 38 1 3.5330 -3.4549 -3.5974 39 1 -0.3214 -3.9024 -6.7098 40 1 0.5440 -5.5405 -8.3654 41 1 4.4471 -7.4547 -7.0002 42 1 4.3426 -8.2916 -8.4532 43 1 3.8639 -6.2459 -5.7359 44 1 0.4329 -2.5371 -1.4644 45 1 0.6750 -1.1643 -2.5861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481508607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:10:18 Heat of formation + Delta-G solvation = -22.907503 kcal Electronic energy + Delta-G solvation = -28152.614808 eV Core-core repulsion = 24170.197870 eV Total energy + Delta-G solvation = -3982.416937 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07366 -40.93681 -39.81122 -38.92404 -37.21998 -35.02053 -34.18966 -33.71624 -32.91811 -32.27940 -30.14511 -28.55139 -27.60990 -26.22289 -24.79671 -24.23344 -22.82903 -22.24713 -21.50345 -21.03882 -19.24771 -18.81661 -18.67834 -18.14116 -17.53377 -17.30238 -16.91741 -16.49035 -16.25872 -16.11772 -15.94659 -15.47485 -15.19414 -15.13245 -14.84507 -14.57505 -14.38464 -14.31040 -14.08089 -13.91720 -13.79646 -13.56864 -13.41775 -12.82503 -12.67957 -12.49564 -12.27277 -11.94025 -11.84414 -11.59703 -11.52768 -11.44621 -11.34050 -11.16196 -10.79747 -10.60080 -10.56964 -10.45727 -9.69060 -8.71971 -8.18865 -5.57867 -0.94406 0.03388 1.23788 1.33166 1.46195 1.57781 1.76334 1.93067 2.33987 2.44701 2.71086 2.83502 3.03661 3.38128 3.49541 3.55675 3.69515 3.74449 3.81846 3.90313 3.93079 4.03888 4.37428 4.47583 4.53374 4.54215 4.65816 4.72798 4.76401 4.81066 4.82823 4.91898 4.98009 5.04829 5.06968 5.13558 5.22451 5.26372 5.32803 5.47965 5.80245 5.95997 6.18560 6.30171 6.34788 6.47684 6.91322 7.01647 7.18433 7.64812 8.06880 9.01358 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002514 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.986224 B =11134.467701 C =11810.977599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.624 5.624 3 C -0.265 4.265 4 H 0.029 0.971 5 C -0.018 4.018 6 N -0.948 5.948 7 Si 0.946 3.054 8 H -0.260 1.260 9 H -0.310 1.310 10 H -0.259 1.259 11 C 0.145 3.855 12 C -0.111 4.111 13 H 0.052 0.948 14 C -0.127 4.127 15 C 0.125 3.875 16 N -0.597 5.597 17 C 0.567 3.433 18 O -0.573 6.573 19 C 0.097 3.903 20 C -0.121 4.121 21 C -0.019 4.019 22 C -0.172 4.172 23 C 0.571 3.429 24 N -0.822 5.822 25 O -0.579 6.579 26 C 0.144 3.856 27 N -0.461 5.461 28 C 0.127 3.873 29 H 0.010 0.990 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.419 0.581 42 H 0.418 0.582 43 H 0.212 0.788 44 H 0.078 0.922 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -25.739 -11.781 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.348 5.348 3 C -0.395 4.395 4 H 0.047 0.953 5 C -0.215 4.215 6 N -0.591 5.591 7 Si 0.773 3.227 8 H -0.186 1.186 9 H -0.239 1.239 10 H -0.183 1.183 11 C 0.020 3.980 12 C -0.132 4.132 13 H 0.071 0.929 14 C -0.166 4.166 15 C 0.003 3.997 16 N -0.328 5.328 17 C 0.355 3.645 18 O -0.453 6.453 19 C -0.040 4.040 20 C -0.142 4.142 21 C -0.046 4.046 22 C -0.178 4.178 23 C 0.356 3.644 24 N -0.387 5.387 25 O -0.459 6.459 26 C -0.017 4.017 27 N -0.172 5.172 28 C 0.005 3.995 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.252 0.748 42 H 0.251 0.749 43 H 0.228 0.772 44 H 0.096 0.904 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.002 -25.191 -11.689 27.789 hybrid contribution 0.052 0.362 -0.123 0.385 sum 1.055 -24.830 -11.811 27.516 Atomic orbital electron populations 1.21228 0.82713 1.00282 0.98064 1.44176 1.02048 1.01665 1.86949 1.18543 1.06378 0.91658 1.22872 0.95306 1.26142 0.96438 0.98649 1.00262 1.70043 1.09004 1.39583 1.40514 0.85812 0.78432 0.78479 0.79971 1.18572 1.23900 1.18306 1.21260 0.96098 0.86986 0.93646 1.22806 0.94967 0.97189 0.98279 0.92916 1.22839 1.01440 0.94789 0.97498 1.22226 0.84011 0.97649 0.95774 1.48557 1.25193 1.40963 1.18048 1.18023 0.83267 0.82276 0.80920 1.90769 1.25315 1.51577 1.77629 1.21030 0.92912 0.95972 0.94059 1.22148 1.01425 0.97953 0.92653 1.21896 0.93448 0.90567 0.98673 1.21251 0.98184 1.00560 0.97784 1.18026 0.81396 0.80293 0.84730 1.43554 1.23967 1.44383 1.26789 1.90839 1.61207 1.66322 1.27538 1.23650 0.99125 0.91706 0.87248 1.67848 1.10534 1.06681 1.32098 1.22167 0.97470 0.91621 0.88273 0.97157 0.94666 0.91962 0.92724 0.93868 0.90748 0.89059 0.88632 0.88630 0.90226 0.82868 0.81927 0.74777 0.74913 0.77203 0.90422 0.93341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.77 9.91 127.77 1.27 6.04 16 2 N -0.62 -28.87 2.38 -726.92 -1.73 -30.59 16 3 C -0.26 -15.06 9.91 84.03 0.83 -14.23 16 4 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 5 C -0.02 -1.05 5.27 84.86 0.45 -0.60 16 6 N -0.95 -58.67 13.97 21.65 0.30 -58.37 16 7 Si 0.95 44.13 25.18 68.60 1.73 45.86 16 8 H -0.26 -10.98 6.66 99.48 0.66 -10.32 16 9 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 10 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 11 C 0.15 5.61 4.08 86.38 0.35 5.96 16 12 C -0.11 -3.79 3.29 -9.40 -0.03 -3.82 16 13 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.13 -3.04 6.42 31.78 0.20 -2.83 16 15 C 0.12 2.77 5.40 86.72 0.47 3.24 16 16 N -0.60 -17.55 3.33 -814.65 -2.71 -20.26 16 17 C 0.57 17.55 7.85 86.93 0.68 18.24 16 18 O -0.57 -21.66 16.57 -3.66 -0.06 -21.72 16 19 C 0.10 2.26 6.72 41.96 0.28 2.54 16 20 C -0.12 -2.43 9.62 22.58 0.22 -2.22 16 21 C -0.02 -0.32 9.71 22.72 0.22 -0.10 16 22 C -0.17 -2.27 5.90 -19.93 -0.12 -2.39 16 23 C 0.57 7.47 8.06 86.83 0.70 8.17 16 24 N -0.82 -2.88 8.83 -175.50 -1.55 -4.43 16 25 O -0.58 -12.79 17.25 -3.83 -0.07 -12.86 16 26 C 0.14 1.51 10.71 85.12 0.91 2.42 16 27 N -0.46 -8.13 6.82 -183.90 -1.25 -9.38 16 28 C 0.13 4.21 5.36 86.85 0.47 4.68 16 29 H 0.01 0.40 7.54 -2.39 -0.02 0.38 16 30 H 0.03 1.40 8.08 -2.38 -0.02 1.39 16 31 H 0.06 2.01 7.84 -2.39 -0.02 1.99 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.04 1.82 3.47 -2.39 -0.01 1.81 16 34 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 1.89 8.04 -2.39 -0.02 1.87 16 37 H 0.10 1.71 7.53 -2.39 -0.02 1.69 16 38 H 0.08 1.71 7.40 -2.39 -0.02 1.70 16 39 H 0.15 3.13 7.63 -2.91 -0.02 3.11 16 40 H 0.16 2.36 7.73 -2.91 -0.02 2.34 16 41 H 0.42 -1.32 6.89 -92.71 -0.64 -1.96 16 42 H 0.42 0.65 8.93 -92.71 -0.83 -0.18 16 43 H 0.21 0.07 6.41 -2.91 -0.02 0.05 16 44 H 0.08 2.38 8.00 -2.39 -0.02 2.36 16 45 H 0.05 1.93 7.51 -2.39 -0.02 1.91 16 Total: -1.00 -81.60 366.86 1.10 -80.50 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -0.46 Total: 6.16 kcal Atomic # 6 Polarization: 18.21 SS G_CDS: 6.90 Total: 25.11 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.94 Total: -123.04 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.13 Total: -34.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.73 Total: 45.86 kcal Total: -81.60 1.10 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481508607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.588 kcal (2) G-P(sol) polarization free energy of solvation -81.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds