Wall clock time and date at job start Sat Apr 11 2020 03:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 120.00087 * 2 1 4 4 H 1.08008 * 119.99935 * 326.28144 * 3 2 1 5 5 C 1.38813 * 119.99999 * 146.27268 * 3 2 1 6 6 N 1.31625 * 119.99762 * 155.97052 * 5 3 2 7 7 Si 1.86794 * 119.99977 * 335.96808 * 5 3 2 8 8 H 1.48500 * 109.46940 * 95.46026 * 7 5 3 9 9 H 1.48508 * 109.47077 * 215.45621 * 7 5 3 10 10 H 1.48498 * 109.47373 * 335.45712 * 7 5 3 11 11 C 1.46499 * 120.00188 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47076 * 89.99875 * 11 2 1 13 13 C 1.53004 * 109.46791 * 179.97438 * 12 11 2 14 14 N 1.46504 * 109.46844 * 180.02562 * 13 12 11 15 15 C 1.46499 * 119.99904 * 270.00133 * 14 13 12 16 16 C 1.34777 * 119.99646 * 90.00587 * 14 13 12 17 17 O 1.21626 * 120.00274 * 5.11322 * 16 14 13 18 18 C 1.47215 * 119.99503 * 185.12037 * 16 14 13 19 19 C 1.37969 * 126.81817 * 321.85260 * 18 16 14 20 20 N 1.34134 * 107.94110 * 180.30018 * 19 18 16 21 21 H 0.97000 * 125.13547 * 179.70310 * 20 19 18 22 22 N 1.39766 * 109.72578 * 359.71484 * 20 19 18 23 23 C 1.31587 * 109.05224 * 0.02562 * 22 20 19 24 24 C 1.47658 * 126.54282 * 179.97438 * 23 22 20 25 25 C 1.36014 * 125.93835 * 324.73527 * 24 23 22 26 26 C 1.40905 * 106.73514 * 180.26369 * 25 24 23 27 27 C 1.34743 * 107.04193 * 0.02562 * 26 25 24 28 28 O 1.34305 * 108.68588 * 0.02562 * 27 26 25 29 29 H 1.08996 * 109.47418 * 265.12670 * 1 2 3 30 30 H 1.09000 * 109.47221 * 25.12817 * 1 2 3 31 31 H 1.09005 * 109.47047 * 145.12249 * 1 2 3 32 32 H 0.96998 * 119.99771 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.47061 * 329.99710 * 11 2 1 34 34 H 1.08998 * 109.47111 * 210.00015 * 11 2 1 35 35 H 1.09000 * 109.46964 * 60.00877 * 12 11 2 36 36 H 1.08998 * 109.47265 * 300.00046 * 12 11 2 37 37 H 1.09002 * 109.47243 * 60.00482 * 13 12 11 38 38 H 1.08998 * 109.47353 * 300.00114 * 13 12 11 39 39 H 1.09006 * 109.46999 * 265.21120 * 15 14 13 40 40 H 1.08999 * 109.47420 * 25.21596 * 15 14 13 41 41 H 1.09001 * 109.46911 * 145.21222 * 15 14 13 42 42 H 1.08000 * 126.02726 * 359.97438 * 19 18 16 43 43 H 1.08000 * 126.63030 * 0.23714 * 25 24 23 44 44 H 1.07999 * 126.47447 * 180.02562 * 26 25 24 45 45 H 1.07999 * 125.65851 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7460 2.0426 -0.5192 5 6 3.3626 1.2871 0.6675 6 7 4.2367 2.2035 0.3088 7 14 3.7542 0.1227 2.0747 8 1 4.5470 -1.0237 1.5625 9 1 4.5381 0.8434 3.1099 10 1 2.4891 -0.3770 2.6704 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.2182 -3.0344 -1.4438 14 7 3.4629 -3.4564 -2.8252 15 6 2.4867 -4.3023 -3.5165 16 6 4.5860 -3.0665 -3.4599 17 8 5.4395 -2.4431 -2.8581 18 6 4.7797 -3.3951 -4.8818 19 6 4.4215 -4.5670 -5.5158 20 7 4.7779 -4.4650 -6.8049 21 1 4.6452 -5.1519 -7.4768 22 7 5.3696 -3.2196 -7.0336 23 6 5.3897 -2.5402 -5.9069 24 6 5.9286 -1.1796 -5.7101 25 6 7.0161 -0.6536 -6.3352 26 6 7.1703 0.6586 -5.8455 27 6 6.1808 0.8666 -4.9550 28 8 5.4330 -0.2461 -4.8749 29 1 -0.3634 -0.0873 1.0239 30 1 -0.3634 0.9304 -0.4364 31 1 -0.3633 -0.8431 -0.5877 32 1 5.0841 2.2744 0.7755 33 1 1.6085 -2.0286 0.5130 34 1 3.1499 -1.1386 0.5133 35 1 3.0417 -0.9499 -1.9567 36 1 1.5001 -1.8399 -1.9571 37 1 2.6295 -3.7945 -0.9302 38 1 4.1706 -2.9039 -0.9300 39 1 2.7772 -5.3482 -3.4170 40 1 1.5011 -4.1553 -3.0748 41 1 2.4555 -4.0327 -4.5722 42 1 3.9437 -5.4185 -5.0543 43 1 7.6408 -1.1466 -7.0654 44 1 7.9369 1.3641 -6.1302 45 1 6.0167 1.7768 -4.3974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484767574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:11:06 Heat of formation + Delta-G solvation = 99.183683 kcal Electronic energy + Delta-G solvation = -29018.204489 eV Core-core repulsion = 25041.081823 eV Total energy + Delta-G solvation = -3977.122666 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31625 -41.28731 -39.18402 -36.35669 -35.27876 -33.13666 -32.36530 -32.17178 -31.30674 -30.04373 -28.82879 -27.09884 -26.26625 -25.37077 -23.13525 -22.92918 -21.74063 -21.20514 -20.56578 -19.99362 -19.51692 -17.88691 -17.13581 -16.72930 -16.52974 -15.87934 -15.56889 -15.47663 -15.22618 -14.89272 -14.58140 -14.10937 -14.06428 -13.43141 -13.32430 -13.13110 -12.87268 -12.68571 -12.67820 -12.51903 -12.34852 -12.13116 -11.96332 -11.77278 -11.30233 -11.25569 -11.00951 -10.73547 -10.36057 -10.34008 -10.32354 -9.72158 -9.70467 -9.64363 -9.35245 -9.01993 -8.47707 -8.37362 -8.13378 -6.77930 -5.89138 -3.25168 1.16015 1.40833 2.13276 2.40879 2.83636 2.99234 3.28896 3.41425 3.43281 3.54604 3.59420 4.22776 4.43077 4.63202 4.82817 4.91403 5.03945 5.09332 5.12955 5.18416 5.25189 5.28588 5.47159 5.49094 5.55213 5.72148 5.86387 5.98364 5.99220 6.04249 6.14291 6.22531 6.25170 6.32292 6.42805 6.60044 6.60654 6.73512 6.75108 6.80435 6.90102 7.07944 7.19534 7.36104 7.56822 8.13226 8.44685 8.45724 9.07766 9.82577 10.21127 11.26924 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011671 B = 0.004183 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.473736 B = 6692.925929 C = 8179.222755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.612 5.612 3 C -0.271 4.271 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.897 5.897 7 Si 0.875 3.125 8 H -0.283 1.283 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.142 3.858 12 C -0.146 4.146 13 C 0.117 3.883 14 N -0.612 5.612 15 C 0.075 3.925 16 C 0.587 3.413 17 O -0.514 6.514 18 C -0.259 4.259 19 C 0.097 3.903 20 N -0.462 5.462 21 H 0.445 0.555 22 N -0.267 5.267 23 C 0.203 3.797 24 C 0.043 3.957 25 C -0.163 4.163 26 C -0.229 4.229 27 C 0.002 3.998 28 O -0.145 6.145 29 H 0.005 0.995 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.193 0.807 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -16.630 -15.013 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.336 5.336 3 C -0.399 4.399 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.538 5.538 7 Si 0.706 3.294 8 H -0.211 1.211 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.006 4.006 14 N -0.346 5.346 15 C -0.069 4.069 16 C 0.374 3.626 17 O -0.388 6.388 18 C -0.275 4.275 19 C -0.052 4.052 20 N -0.169 5.169 21 H 0.290 0.710 22 N -0.090 5.090 23 C 0.036 3.964 24 C -0.010 4.010 25 C -0.184 4.184 26 C -0.248 4.248 27 C -0.068 4.068 28 O -0.038 6.038 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.210 0.790 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.054 -16.232 -15.657 22.553 hybrid contribution 0.102 -1.036 1.176 1.571 sum 0.156 -17.268 -14.481 22.536 Atomic orbital electron populations 1.21030 0.84619 0.98955 0.97216 1.44042 1.00734 1.02088 1.86772 1.18780 1.03175 0.89822 1.28112 0.90408 1.25326 0.96541 0.96515 0.97980 1.69881 1.07038 1.36522 1.40389 0.86963 0.77801 0.80533 0.84096 1.21089 1.23088 1.19748 1.21058 0.96240 0.87603 0.93530 1.22472 0.99366 0.95922 1.00947 1.21600 1.01615 0.96749 0.80627 1.47707 1.20354 1.51711 1.14844 1.21939 0.93246 0.93539 0.98133 1.17127 0.81665 0.79259 0.84556 1.90863 1.42219 1.39198 1.66548 1.21402 1.14300 0.96173 0.95582 1.23176 0.97603 0.99366 0.85063 1.45883 1.47558 1.14592 1.08845 0.70952 1.77402 1.19346 0.92409 1.19879 1.20096 0.95985 0.90696 0.89670 1.18473 0.97360 0.88011 0.97123 1.21715 0.98376 0.95419 1.02910 1.21714 1.02771 0.97729 1.02611 1.24419 0.92292 0.89741 1.00388 1.84215 1.48146 1.20529 1.50912 0.97693 0.93745 0.95659 0.92793 0.94513 0.92871 0.90638 0.92997 0.91078 0.89813 0.92991 0.90619 0.91250 0.79036 0.83282 0.83029 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.61 10.70 59.85 0.64 3.25 16 2 N -0.61 -15.24 2.55 -181.12 -0.46 -15.70 16 3 C -0.27 -7.88 9.92 -15.06 -0.15 -8.03 16 4 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 5 C 0.04 1.10 5.30 -17.43 -0.09 1.01 16 6 N -0.90 -28.24 13.97 55.49 0.78 -27.47 16 7 Si 0.88 23.20 24.99 -169.99 -4.25 18.95 16 8 H -0.28 -7.35 6.65 56.52 0.38 -6.97 16 9 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 10 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.14 3.17 4.55 -4.04 -0.02 3.16 16 12 C -0.15 -2.91 5.86 -26.73 -0.16 -3.07 16 13 C 0.12 1.94 5.43 -4.04 -0.02 1.91 16 14 N -0.61 -8.99 2.87 -182.92 -0.53 -9.52 16 15 C 0.08 0.68 9.05 59.85 0.54 1.22 16 16 C 0.59 10.24 7.52 -12.61 -0.09 10.15 16 17 O -0.51 -11.49 16.12 5.25 0.08 -11.41 16 18 C -0.26 -3.71 5.55 -102.91 -0.57 -4.28 16 19 C 0.10 0.84 9.72 -16.64 -0.16 0.68 16 20 N -0.46 -3.78 7.20 30.81 0.22 -3.56 16 21 H 0.45 1.67 8.96 -182.85 -1.64 0.03 16 22 N -0.27 -3.42 12.67 34.50 0.44 -2.99 16 23 C 0.20 3.15 7.29 -80.68 -0.59 2.57 16 24 C 0.04 0.73 6.88 -36.54 -0.25 0.48 16 25 C -0.16 -2.41 10.85 -39.37 -0.43 -2.84 16 26 C -0.23 -3.21 10.89 -39.81 -0.43 -3.64 16 27 C 0.00 0.03 12.08 29.49 0.36 0.38 16 28 O -0.15 -2.78 10.40 4.59 0.05 -2.74 16 29 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.04 0.90 8.00 -51.93 -0.42 0.48 16 31 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 32 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 33 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.05 1.33 2.89 -51.93 -0.15 1.18 16 35 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.08 1.61 7.35 -51.93 -0.38 1.23 16 39 H 0.05 0.31 7.40 -51.93 -0.38 -0.07 16 40 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 41 H 0.07 0.58 5.85 -51.93 -0.30 0.27 16 42 H 0.19 0.82 6.35 -52.49 -0.33 0.49 16 43 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.21 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -39.30 377.27 -6.82 -46.12 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.40 Total: -0.34 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.43 Total: 2.96 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.45 Total: -59.23 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.13 Total: -14.14 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.25 Total: 18.95 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.30 -6.82 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484767574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.303 kcal (2) G-P(sol) polarization free energy of solvation -39.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds