Wall clock time and date at job start Sat Apr 11 2020 03:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46845 * 2 1 4 4 C 1.52997 * 109.47150 * 240.00126 * 2 1 3 5 5 S 1.81398 * 109.47182 * 119.99915 * 2 1 3 6 6 O 1.42099 * 108.57809 * 305.51682 * 5 2 1 7 7 O 1.42090 * 108.58073 * 174.48802 * 5 2 1 8 8 C 1.81398 * 101.92156 * 60.00039 * 5 2 1 9 9 C 1.50697 * 109.47448 * 180.02562 * 8 5 2 10 10 O 1.21274 * 119.99704 * 359.97438 * 9 8 5 11 11 N 1.34770 * 120.00172 * 180.02562 * 9 8 5 12 12 C 1.46498 * 120.00031 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47292 * 179.97438 * 12 11 9 14 14 H 1.09002 * 112.84839 * 43.80323 * 13 12 11 15 15 C 1.53784 * 113.61409 * 174.99700 * 13 12 11 16 16 C 1.53788 * 87.07794 * 139.98290 * 15 13 12 17 17 H 1.09000 * 113.61049 * 89.19841 * 16 15 13 18 18 N 1.46493 * 113.61212 * 220.01875 * 16 15 13 19 19 C 1.36945 * 119.99892 * 203.46946 * 18 16 15 20 20 H 1.08000 * 119.99422 * 359.72792 * 19 18 16 21 21 C 1.38811 * 120.00031 * 179.72716 * 19 18 16 22 22 N 1.31616 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99814 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47151 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47196 * 120.00214 * 23 21 19 26 26 H 1.48500 * 109.46879 * 240.00070 * 23 21 19 27 27 C 1.53786 * 87.17388 * 334.61227 * 16 15 13 28 28 H 1.08998 * 109.47377 * 299.99990 * 1 2 3 29 29 H 1.09002 * 109.46970 * 59.99984 * 1 2 3 30 30 H 1.09001 * 109.47371 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46418 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46893 * 300.00049 * 3 2 1 33 33 H 1.08998 * 109.47125 * 59.99855 * 3 2 1 34 34 H 1.08996 * 109.47205 * 299.99506 * 4 2 1 35 35 H 1.09002 * 109.47274 * 60.00077 * 4 2 1 36 36 H 1.09000 * 109.46842 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47149 * 59.99908 * 8 5 2 38 38 H 1.09005 * 109.47548 * 300.00343 * 8 5 2 39 39 H 0.96999 * 120.00140 * 359.97438 * 11 9 8 40 40 H 1.09001 * 109.47236 * 60.00177 * 12 11 9 41 41 H 1.09005 * 109.47583 * 299.99807 * 12 11 9 42 42 H 1.08994 * 113.61261 * 25.43826 * 15 13 12 43 43 H 1.08995 * 113.61653 * 254.52881 * 15 13 12 44 44 H 0.97000 * 120.00738 * 23.20410 * 18 16 15 45 45 H 0.97004 * 119.99151 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.61267 * 139.93978 * 27 16 15 47 47 H 1.08999 * 113.61358 * 270.84184 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1347 -0.8551 1.4811 6 8 1.5478 -0.2495 2.6248 7 8 3.5495 -0.9571 1.3991 8 6 1.4229 -2.5108 1.2747 9 6 1.8270 -3.3799 2.4376 10 8 2.5267 -2.9271 3.3186 11 7 1.4117 -4.6606 2.4981 12 6 1.8050 -5.5056 3.6283 13 6 1.2046 -6.9021 3.4543 14 1 1.2991 -7.2796 2.4361 15 6 1.6577 -7.9056 4.5279 16 6 0.2125 -8.4314 4.5340 17 1 0.0348 -9.2285 3.8121 18 7 -0.2890 -8.7536 5.8722 19 6 -1.3158 -9.6474 6.0218 20 1 -1.7587 -10.1113 5.1528 21 6 -1.7872 -9.9570 7.2901 22 7 -1.2477 -9.3912 8.3489 23 14 -3.1873 -11.1766 7.4941 24 1 -3.6155 -11.6665 6.1592 25 1 -2.7289 -12.3231 8.3190 26 1 -4.3311 -10.5093 8.1662 27 6 -0.2148 -7.0412 4.0342 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7208 -1.2494 37 1 1.7894 -2.9508 0.3473 38 1 0.3360 -2.4370 1.2372 39 1 0.8524 -5.0229 1.7933 40 1 1.4382 -5.0658 4.5558 41 1 2.8919 -5.5792 3.6661 42 1 1.9557 -7.4369 5.4657 43 1 2.3852 -8.6325 4.1669 44 1 0.1087 -8.3369 6.6527 45 1 -1.5775 -9.6073 9.2352 46 1 -0.9965 -7.0714 3.2753 47 1 -0.4295 -6.3357 4.8368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691473708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:13:33 Heat of formation + Delta-G solvation = -115.747004 kcal Electronic energy + Delta-G solvation = -26449.849597 eV Core-core repulsion = 22566.558037 eV Total energy + Delta-G solvation = -3883.291560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.10952 -39.84720 -38.13702 -37.56235 -37.08170 -36.18280 -35.10912 -32.49058 -31.69173 -28.71396 -28.29654 -27.93005 -26.46763 -25.77258 -22.95163 -22.48062 -21.99570 -20.50661 -19.50528 -19.09513 -18.58749 -18.01089 -17.35333 -17.26204 -16.88338 -16.52336 -16.35583 -16.02147 -15.49802 -15.25605 -15.15339 -15.03477 -14.74144 -14.59172 -14.32595 -13.80290 -13.44202 -13.27560 -13.25759 -13.23920 -13.16895 -13.06689 -13.02917 -12.93761 -12.68036 -12.62642 -12.32482 -12.19502 -12.15662 -12.06037 -12.00886 -11.72857 -11.56422 -11.33198 -11.08834 -10.99870 -10.82046 -10.25264 -8.97709 -7.94556 -5.23021 -1.17797 1.28967 1.47415 1.48295 1.58306 1.68192 1.87274 2.56716 2.76858 2.93696 3.36674 3.42920 3.45837 3.50736 3.70425 3.72814 3.91414 3.93399 3.93563 4.16218 4.25272 4.34347 4.40570 4.53560 4.58316 4.58719 4.69904 4.72387 4.76462 4.81746 4.82798 4.96085 4.98772 5.03717 5.09761 5.19165 5.23223 5.27536 5.30103 5.39757 5.52546 5.73325 6.26682 6.27977 6.99084 7.33060 8.11911 8.32979 9.29246 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026829 B = 0.001929 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.412138 B =14515.171343 C =14705.182862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.505 4.505 3 C -0.152 4.152 4 C -0.153 4.153 5 S 2.415 3.585 6 O -0.978 6.978 7 O -0.974 6.974 8 C -0.648 4.648 9 C 0.524 3.476 10 O -0.592 6.592 11 N -0.694 5.694 12 C 0.128 3.872 13 C -0.093 4.093 14 H 0.130 0.870 15 C -0.139 4.139 16 C 0.143 3.857 17 H 0.083 0.917 18 N -0.732 5.732 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.974 3.026 24 H -0.261 1.261 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.154 4.154 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.211 0.789 38 H 0.205 0.795 39 H 0.425 0.575 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.371 0.629 45 H 0.249 0.751 46 H 0.074 0.926 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 18.478 -29.422 34.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.600 4.600 3 C -0.210 4.210 4 C -0.211 4.211 5 S 2.601 3.399 6 O -0.975 6.975 7 O -0.971 6.971 8 C -0.777 4.777 9 C 0.310 3.690 10 O -0.473 6.473 11 N -0.346 5.346 12 C 0.004 3.996 13 C -0.112 4.112 14 H 0.148 0.852 15 C -0.179 4.179 16 C 0.033 3.967 17 H 0.101 0.899 18 N -0.369 5.369 19 C -0.371 4.371 20 H 0.099 0.901 21 C -0.275 4.275 22 N -0.624 5.624 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.223 1.223 26 H -0.224 1.224 27 C -0.195 4.195 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.222 0.778 39 H 0.264 0.736 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.202 0.798 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.587 18.906 -28.126 34.198 hybrid contribution -1.065 -0.784 0.654 1.475 sum 3.522 18.122 -27.472 33.098 Atomic orbital electron populations 1.22072 0.87462 1.05867 1.05832 1.29542 1.07883 1.08078 1.14482 1.21917 1.02041 0.91357 1.05714 1.22072 1.02431 1.01692 0.94913 1.08336 0.75454 0.77965 0.78121 1.93502 1.79595 1.75207 1.49187 1.93492 1.29787 1.86214 1.87584 1.30807 1.18660 1.20830 1.07387 1.19910 0.79517 0.83499 0.86081 1.90868 1.40287 1.74171 1.41997 1.45701 1.52481 1.10187 1.26220 1.21396 0.99813 0.89772 0.88571 1.22520 0.95745 0.92396 1.00543 0.85243 1.23335 0.97802 0.98287 0.98437 1.21975 0.93193 0.94649 0.86845 0.89889 1.42672 1.39846 1.50833 1.03557 1.19781 1.08819 1.15990 0.92511 0.90058 1.25634 1.03191 1.03167 0.95508 1.69842 1.46193 1.48709 0.97686 0.85055 0.78594 0.78110 0.77903 1.18549 1.22316 1.22384 1.23770 0.96380 0.99563 0.99776 0.91449 0.87477 0.88343 0.91428 0.86799 0.91686 0.88234 0.87530 0.91125 0.77221 0.77789 0.73589 0.93375 0.91296 0.91778 0.90104 0.79768 0.94180 0.90775 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 67. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 8.22 71.98 0.59 0.04 16 2 C -0.50 -4.13 0.87 -10.79 -0.01 -4.14 16 3 C -0.15 -1.43 8.48 71.98 0.61 -0.82 16 4 C -0.15 -0.38 8.22 71.98 0.59 0.21 16 5 S 2.42 48.86 3.01 -56.49 -0.17 48.69 16 6 O -0.98 -29.50 17.76 -125.74 -2.23 -31.73 16 7 O -0.97 -28.06 17.76 -125.75 -2.23 -30.30 16 8 C -0.65 -7.24 5.38 71.23 0.38 -6.86 16 9 C 0.52 12.31 7.85 87.66 0.69 13.00 16 10 O -0.59 -21.38 15.62 -0.13 0.00 -21.38 16 11 N -0.69 -12.80 5.56 -463.07 -2.57 -15.37 16 12 C 0.13 3.13 5.51 86.38 0.48 3.61 16 13 C -0.09 -2.09 3.75 -10.21 -0.04 -2.13 16 14 H 0.13 2.00 8.14 -2.39 -0.02 1.99 16 15 C -0.14 -4.13 7.39 31.12 0.23 -3.89 16 16 C 0.14 5.20 4.47 45.52 0.20 5.40 16 17 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 18 N -0.73 -36.51 5.41 -320.43 -1.73 -38.25 16 19 C -0.24 -13.09 9.97 84.03 0.84 -12.25 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 22 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 23 Si 0.97 45.99 29.55 68.60 2.03 48.01 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 C -0.15 -4.62 7.45 31.18 0.23 -4.39 16 28 H 0.07 0.47 8.06 -2.39 -0.02 0.45 16 29 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.10 -0.21 6.56 -2.39 -0.02 -0.23 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 -0.34 6.56 -2.39 -0.02 -0.36 16 35 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.07 0.37 8.06 -2.39 -0.02 0.35 16 37 H 0.21 0.12 6.87 -2.39 -0.02 0.10 16 38 H 0.20 0.43 6.87 -2.39 -0.02 0.42 16 39 H 0.43 3.99 8.47 -92.71 -0.79 3.21 16 40 H 0.05 1.46 7.85 -2.39 -0.02 1.44 16 41 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.06 2.15 8.07 -2.39 -0.02 2.13 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.37 20.33 7.90 -92.71 -0.73 19.59 16 45 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 Total: -1.00 -92.88 392.81 -1.91 -94.80 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.54 Total: 22.27 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 5.26 Total: -16.56 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.02 Total: -113.81 kcal Atomic # 8 Polarization: -78.94 SS G_CDS: -4.47 Total: -83.41 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 48.86 SS G_CDS: -0.17 Total: 48.69 kcal Total: -92.88 -1.91 -94.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691473708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.951 kcal (2) G-P(sol) polarization free energy of solvation -92.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds